Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3791.1 and Xcc-8004.3792.1 are separated by 8 nucleotides Xcc-8004.3792.1 and Xcc-8004.3793.1 are separated by 14 nucleotides Xcc-8004.3793.1 and Xcc-8004.3794.1 overlap by 53 nucleotides Xcc-8004.3794.1 and Xcc-8004.3795.1 are separated by 128 nucleotides
Xcc-8004.3791.1: Xcc-8004.3791.1 - Beta-xylosidase (EC 3.2.1.37), at 3,667,903 to 3,669,570
Xcc-8004.3791.1
Xcc-8004.3792.1: Xcc-8004.3792.1 - Mobile element protein, at 3,669,579 to 3,669,764
Xcc-8004.3792.1
Xcc-8004.3793.1: Xcc-8004.3793.1 - Mobile element protein, at 3,669,779 to 3,670,048
Xcc-8004.3793.1
Xcc-8004.3794.1: Xcc-8004.3794.1 - Mobile element protein, at 3,669,996 to 3,670,376
Xcc-8004.3794.1
Xcc-8004.3795.1: Xcc-8004.3795.1 - Histidine kinase/response regulator hybrid protein, at 3,670,505 to 3,672,445
Xcc-8004.3795.1
Position (kb) 3669
3670
3671 Strain fitness (log2 ratio) -1
0
1 at 3669.161 kb on - strand, within Xcc-8004.3791.1 at 3669.161 kb on - strand, within Xcc-8004.3791.1 at 3669.559 kb on + strand at 3669.569 kb on - strand at 3669.598 kb on - strand, within Xcc-8004.3792.1 at 3669.598 kb on - strand, within Xcc-8004.3792.1 at 3670.244 kb on - strand, within Xcc-8004.3794.1 at 3670.244 kb on - strand, within Xcc-8004.3794.1 at 3670.268 kb on - strand, within Xcc-8004.3794.1 at 3670.419 kb on + strand at 3670.419 kb on + strand at 3670.528 kb on + strand at 3670.617 kb on + strand at 3670.788 kb on + strand, within Xcc-8004.3795.1 at 3671.007 kb on + strand, within Xcc-8004.3795.1 at 3671.007 kb on + strand, within Xcc-8004.3795.1 at 3671.133 kb on + strand, within Xcc-8004.3795.1 at 3671.133 kb on + strand, within Xcc-8004.3795.1 at 3671.163 kb on + strand, within Xcc-8004.3795.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 3,669,161 - Xcc-8004.3791.1 0.75 -0.6 3,669,161 - Xcc-8004.3791.1 0.75 -0.2 3,669,559 + -0.7 3,669,569 - +0.8 3,669,598 - Xcc-8004.3792.1 0.10 -1.1 3,669,598 - Xcc-8004.3792.1 0.10 -0.2 3,670,244 - Xcc-8004.3794.1 0.65 -1.6 3,670,244 - Xcc-8004.3794.1 0.65 -0.7 3,670,268 - Xcc-8004.3794.1 0.71 -0.9 3,670,419 + -1.0 3,670,419 + -0.6 3,670,528 + +1.3 3,670,617 + +0.8 3,670,788 + Xcc-8004.3795.1 0.15 +0.1 3,671,007 + Xcc-8004.3795.1 0.26 -0.5 3,671,007 + Xcc-8004.3795.1 0.26 +0.6 3,671,133 + Xcc-8004.3795.1 0.32 -0.4 3,671,133 + Xcc-8004.3795.1 0.32 +0.2 3,671,163 + Xcc-8004.3795.1 0.34 +0.9
Or see this region's nucleotide sequence