Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.375.1 and Xcc-8004.376.1 are separated by 136 nucleotides Xcc-8004.376.1 and Xcc-8004.377.1 are separated by 123 nucleotides
Xcc-8004.375.1: Xcc-8004.375.1 - Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases, at 357,917 to 359,377
Xcc-8004.375.1
Xcc-8004.376.1: Xcc-8004.376.1 - Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1), at 359,514 to 360,677
Xcc-8004.376.1
Xcc-8004.377.1: Xcc-8004.377.1 - Adenosine deaminase (EC 3.5.4.4), at 360,801 to 362,369
Xcc-8004.377.1
Position (kb) 359
360
361 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 358.585 kb on - strand, within Xcc-8004.375.1 at 358.585 kb on - strand, within Xcc-8004.375.1 at 358.851 kb on + strand, within Xcc-8004.375.1 at 358.851 kb on + strand, within Xcc-8004.375.1 at 359.484 kb on + strand at 359.484 kb on + strand at 359.484 kb on + strand at 359.484 kb on + strand at 359.485 kb on - strand at 359.485 kb on - strand at 359.485 kb on - strand at 359.485 kb on - strand at 359.485 kb on - strand at 359.485 kb on - strand at 359.492 kb on - strand at 359.515 kb on + strand at 359.515 kb on + strand at 359.516 kb on - strand at 359.516 kb on - strand at 359.549 kb on + strand at 359.550 kb on - strand at 359.550 kb on - strand at 359.646 kb on + strand, within Xcc-8004.376.1 at 359.646 kb on + strand, within Xcc-8004.376.1 at 359.647 kb on - strand, within Xcc-8004.376.1 at 359.647 kb on - strand, within Xcc-8004.376.1 at 359.647 kb on - strand, within Xcc-8004.376.1 at 359.647 kb on - strand, within Xcc-8004.376.1 at 359.747 kb on - strand, within Xcc-8004.376.1 at 359.747 kb on - strand, within Xcc-8004.376.1 at 359.779 kb on + strand, within Xcc-8004.376.1 at 359.780 kb on - strand, within Xcc-8004.376.1 at 359.916 kb on + strand, within Xcc-8004.376.1 at 359.916 kb on + strand, within Xcc-8004.376.1 at 360.122 kb on - strand, within Xcc-8004.376.1 at 360.122 kb on - strand, within Xcc-8004.376.1 at 360.738 kb on - strand at 360.857 kb on - strand at 360.951 kb on + strand at 360.951 kb on + strand at 360.952 kb on - strand at 361.021 kb on + strand, within Xcc-8004.377.1 at 361.021 kb on + strand, within Xcc-8004.377.1 at 361.093 kb on + strand, within Xcc-8004.377.1 at 361.094 kb on - strand, within Xcc-8004.377.1 at 361.094 kb on - strand, within Xcc-8004.377.1 at 361.094 kb on - strand, within Xcc-8004.377.1 at 361.168 kb on + strand, within Xcc-8004.377.1 at 361.169 kb on - strand, within Xcc-8004.377.1 at 361.243 kb on - strand, within Xcc-8004.377.1 at 361.606 kb on + strand, within Xcc-8004.377.1 at 361.606 kb on + strand, within Xcc-8004.377.1 at 361.607 kb on - strand, within Xcc-8004.377.1 at 361.607 kb on - strand, within Xcc-8004.377.1 at 361.607 kb on - strand, within Xcc-8004.377.1 at 361.607 kb on - strand, within Xcc-8004.377.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 358,585 - Xcc-8004.375.1 0.46 +1.5 358,585 - Xcc-8004.375.1 0.46 -0.9 358,851 + Xcc-8004.375.1 0.64 -0.1 358,851 + Xcc-8004.375.1 0.64 +0.6 359,484 + +1.1 359,484 + +1.4 359,484 + -1.2 359,484 + -0.5 359,485 - +0.2 359,485 - +0.5 359,485 - +1.6 359,485 - -2.0 359,485 - -0.1 359,485 - +1.1 359,492 - +0.4 359,515 + -0.7 359,515 + -0.5 359,516 - +2.0 359,516 - +1.4 359,549 + +0.1 359,550 - +1.0 359,550 - +0.8 359,646 + Xcc-8004.376.1 0.11 +0.2 359,646 + Xcc-8004.376.1 0.11 +0.1 359,647 - Xcc-8004.376.1 0.11 +0.1 359,647 - Xcc-8004.376.1 0.11 -0.5 359,647 - Xcc-8004.376.1 0.11 -0.3 359,647 - Xcc-8004.376.1 0.11 -1.4 359,747 - Xcc-8004.376.1 0.20 -0.9 359,747 - Xcc-8004.376.1 0.20 -0.9 359,779 + Xcc-8004.376.1 0.23 +0.1 359,780 - Xcc-8004.376.1 0.23 -0.0 359,916 + Xcc-8004.376.1 0.35 -2.8 359,916 + Xcc-8004.376.1 0.35 +0.0 360,122 - Xcc-8004.376.1 0.52 -2.0 360,122 - Xcc-8004.376.1 0.52 -2.2 360,738 - -1.5 360,857 - -0.4 360,951 + +0.4 360,951 + -2.3 360,952 - +0.9 361,021 + Xcc-8004.377.1 0.14 -0.2 361,021 + Xcc-8004.377.1 0.14 -0.2 361,093 + Xcc-8004.377.1 0.19 -0.7 361,094 - Xcc-8004.377.1 0.19 -0.3 361,094 - Xcc-8004.377.1 0.19 -1.3 361,094 - Xcc-8004.377.1 0.19 +0.5 361,168 + Xcc-8004.377.1 0.23 +0.7 361,169 - Xcc-8004.377.1 0.23 -1.5 361,243 - Xcc-8004.377.1 0.28 -0.5 361,606 + Xcc-8004.377.1 0.51 +1.9 361,606 + Xcc-8004.377.1 0.51 -0.8 361,607 - Xcc-8004.377.1 0.51 -1.5 361,607 - Xcc-8004.377.1 0.51 +1.0 361,607 - Xcc-8004.377.1 0.51 -1.4 361,607 - Xcc-8004.377.1 0.51 +0.1
Or see this region's nucleotide sequence