Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.321.1 and Xcc-8004.322.1 are separated by 128 nucleotides Xcc-8004.322.1 and Xcc-8004.323.1 are separated by 85 nucleotides Xcc-8004.323.1 and Xcc-8004.324.1 overlap by 4 nucleotides Xcc-8004.324.1 and Xcc-8004.325.1 are separated by 297 nucleotides
Xcc-8004.321.1: Xcc-8004.321.1 - Isovaleryl-CoA dehydrogenase (EC 1.3.8.4), at 311,963 to 313,126
Xcc-8004.321.1
Xcc-8004.322.1: Xcc-8004.322.1 - Predicted transcriptional regulator LiuX of leucine degradation pathway, AcrR family, at 313,255 to 313,872
Xcc-8004.322.1
Xcc-8004.323.1: Xcc-8004.323.1 - FIG01210738: hypothetical protein, at 313,958 to 314,332
Xcc-8004.323.1
Xcc-8004.324.1: Xcc-8004.324.1 - FIG01212022: hypothetical protein, at 314,329 to 314,865
Xcc-8004.324.1
Xcc-8004.325.1: Xcc-8004.325.1 - FIG016502: iron uptake protein, at 315,163 to 315,498
Xcc-8004.325.1
Position (kb) 313
314
315 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 313.042 kb on + strand at 313.043 kb on - strand at 313.043 kb on - strand at 313.197 kb on + strand at 313.197 kb on + strand at 313.198 kb on - strand at 313.223 kb on + strand at 313.234 kb on + strand at 313.234 kb on + strand at 313.235 kb on - strand at 313.235 kb on - strand at 313.235 kb on - strand at 313.235 kb on - strand at 313.235 kb on - strand at 313.261 kb on + strand at 313.261 kb on + strand at 313.261 kb on + strand at 313.262 kb on - strand at 313.585 kb on + strand, within Xcc-8004.322.1 at 313.585 kb on + strand, within Xcc-8004.322.1 at 313.585 kb on + strand, within Xcc-8004.322.1 at 313.585 kb on + strand, within Xcc-8004.322.1 at 313.585 kb on + strand, within Xcc-8004.322.1 at 313.585 kb on + strand, within Xcc-8004.322.1 at 313.586 kb on - strand, within Xcc-8004.322.1 at 313.586 kb on - strand, within Xcc-8004.322.1 at 313.925 kb on + strand at 313.925 kb on + strand at 313.925 kb on + strand at 313.926 kb on - strand at 313.926 kb on - strand at 313.926 kb on - strand at 313.927 kb on + strand at 313.928 kb on - strand at 313.928 kb on - strand at 313.998 kb on + strand, within Xcc-8004.323.1 at 314.142 kb on + strand, within Xcc-8004.323.1 at 314.143 kb on - strand, within Xcc-8004.323.1 at 314.143 kb on - strand, within Xcc-8004.323.1 at 314.297 kb on + strand at 314.297 kb on + strand at 314.297 kb on + strand at 314.297 kb on + strand at 314.298 kb on - strand at 314.298 kb on - strand at 314.298 kb on - strand at 314.298 kb on - strand at 314.298 kb on - strand at 314.298 kb on - strand at 314.362 kb on + strand at 314.362 kb on + strand at 314.363 kb on - strand at 314.363 kb on - strand at 314.461 kb on + strand, within Xcc-8004.324.1 at 314.461 kb on + strand, within Xcc-8004.324.1 at 314.461 kb on + strand, within Xcc-8004.324.1 at 314.461 kb on + strand, within Xcc-8004.324.1 at 314.461 kb on + strand, within Xcc-8004.324.1 at 314.461 kb on + strand, within Xcc-8004.324.1 at 314.461 kb on + strand, within Xcc-8004.324.1 at 314.462 kb on - strand, within Xcc-8004.324.1 at 314.462 kb on - strand, within Xcc-8004.324.1 at 314.462 kb on - strand, within Xcc-8004.324.1 at 314.462 kb on - strand, within Xcc-8004.324.1 at 314.462 kb on - strand, within Xcc-8004.324.1 at 314.462 kb on - strand, within Xcc-8004.324.1 at 314.498 kb on - strand, within Xcc-8004.324.1 at 314.498 kb on - strand, within Xcc-8004.324.1 at 314.542 kb on + strand, within Xcc-8004.324.1 at 314.542 kb on + strand, within Xcc-8004.324.1 at 314.543 kb on - strand, within Xcc-8004.324.1 at 314.864 kb on - strand at 314.980 kb on + strand at 315.035 kb on + strand at 315.035 kb on + strand at 315.042 kb on + strand at 315.043 kb on - strand at 315.043 kb on - strand at 315.052 kb on + strand at 315.298 kb on + strand, within Xcc-8004.325.1 at 315.298 kb on + strand, within Xcc-8004.325.1 at 315.298 kb on + strand, within Xcc-8004.325.1 at 315.298 kb on + strand, within Xcc-8004.325.1 at 315.298 kb on + strand, within Xcc-8004.325.1 at 315.298 kb on + strand, within Xcc-8004.325.1 at 315.298 kb on + strand, within Xcc-8004.325.1 at 315.298 kb on + strand, within Xcc-8004.325.1 at 315.298 kb on + strand, within Xcc-8004.325.1 at 315.298 kb on + strand, within Xcc-8004.325.1 at 315.298 kb on + strand, within Xcc-8004.325.1 at 315.299 kb on - strand, within Xcc-8004.325.1 at 315.299 kb on - strand, within Xcc-8004.325.1 at 315.299 kb on - strand, within Xcc-8004.325.1 at 315.299 kb on - strand, within Xcc-8004.325.1 at 315.299 kb on - strand, within Xcc-8004.325.1 at 315.299 kb on - strand, within Xcc-8004.325.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 313,042 + -0.8 313,043 - -1.7 313,043 - -0.5 313,197 + +0.1 313,197 + +0.0 313,198 - -1.3 313,223 + -0.0 313,234 + +0.1 313,234 + -1.1 313,235 - +0.4 313,235 - +0.1 313,235 - -1.9 313,235 - +1.0 313,235 - -0.2 313,261 + +1.6 313,261 + -0.9 313,261 + -1.1 313,262 - -2.1 313,585 + Xcc-8004.322.1 0.53 +2.1 313,585 + Xcc-8004.322.1 0.53 +0.1 313,585 + Xcc-8004.322.1 0.53 -0.4 313,585 + Xcc-8004.322.1 0.53 -1.0 313,585 + Xcc-8004.322.1 0.53 -1.1 313,585 + Xcc-8004.322.1 0.53 +1.0 313,586 - Xcc-8004.322.1 0.54 -1.8 313,586 - Xcc-8004.322.1 0.54 -2.2 313,925 + -2.0 313,925 + +0.4 313,925 + +0.5 313,926 - +0.8 313,926 - +0.3 313,926 - -1.1 313,927 + -1.0 313,928 - -1.8 313,928 - +0.4 313,998 + Xcc-8004.323.1 0.11 -0.6 314,142 + Xcc-8004.323.1 0.49 -0.4 314,143 - Xcc-8004.323.1 0.49 -1.1 314,143 - Xcc-8004.323.1 0.49 -0.3 314,297 + +0.0 314,297 + -1.5 314,297 + -0.1 314,297 + -0.2 314,298 - +0.1 314,298 - +0.7 314,298 - +1.8 314,298 - -0.5 314,298 - +3.0 314,298 - -0.5 314,362 + -1.3 314,362 + -1.5 314,363 - -1.5 314,363 - +1.0 314,461 + Xcc-8004.324.1 0.25 -1.2 314,461 + Xcc-8004.324.1 0.25 +0.4 314,461 + Xcc-8004.324.1 0.25 -2.4 314,461 + Xcc-8004.324.1 0.25 -0.4 314,461 + Xcc-8004.324.1 0.25 -0.1 314,461 + Xcc-8004.324.1 0.25 -1.5 314,461 + Xcc-8004.324.1 0.25 +0.2 314,462 - Xcc-8004.324.1 0.25 -0.4 314,462 - Xcc-8004.324.1 0.25 +0.6 314,462 - Xcc-8004.324.1 0.25 +0.6 314,462 - Xcc-8004.324.1 0.25 -1.5 314,462 - Xcc-8004.324.1 0.25 -1.0 314,462 - Xcc-8004.324.1 0.25 +1.2 314,498 - Xcc-8004.324.1 0.31 +0.8 314,498 - Xcc-8004.324.1 0.31 -0.2 314,542 + Xcc-8004.324.1 0.40 -0.4 314,542 + Xcc-8004.324.1 0.40 -1.8 314,543 - Xcc-8004.324.1 0.40 -0.0 314,864 - -0.1 314,980 + +0.4 315,035 + -0.9 315,035 + +0.0 315,042 + +1.4 315,043 - -0.7 315,043 - -0.1 315,052 + +2.9 315,298 + Xcc-8004.325.1 0.40 -0.8 315,298 + Xcc-8004.325.1 0.40 -1.7 315,298 + Xcc-8004.325.1 0.40 +0.1 315,298 + Xcc-8004.325.1 0.40 -0.7 315,298 + Xcc-8004.325.1 0.40 -0.1 315,298 + Xcc-8004.325.1 0.40 +0.0 315,298 + Xcc-8004.325.1 0.40 -0.7 315,298 + Xcc-8004.325.1 0.40 -1.7 315,298 + Xcc-8004.325.1 0.40 +1.3 315,298 + Xcc-8004.325.1 0.40 +0.7 315,298 + Xcc-8004.325.1 0.40 +1.1 315,299 - Xcc-8004.325.1 0.40 +0.1 315,299 - Xcc-8004.325.1 0.40 -0.6 315,299 - Xcc-8004.325.1 0.40 +0.2 315,299 - Xcc-8004.325.1 0.40 -0.9 315,299 - Xcc-8004.325.1 0.40 -0.7 315,299 - Xcc-8004.325.1 0.40 -1.0
Or see this region's nucleotide sequence