Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2916.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.2914.1 and Xcc-8004.2915.1 are separated by 191 nucleotidesXcc-8004.2915.1 and Xcc-8004.2916.1 are separated by 122 nucleotidesXcc-8004.2916.1 and Xcc-8004.2917.1 overlap by 4 nucleotides Xcc-8004.2914.1: Xcc-8004.2914.1 - Carbamoyl-phosphate synthase small chain (EC 6.3.5.5), at 2,839,529 to 2,840,704 Xcc-8004.2914.1 Xcc-8004.2915.1: Xcc-8004.2915.1 - 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8), at 2,840,896 to 2,841,564 Xcc-8004.2915.1 Xcc-8004.2916.1: Xcc-8004.2916.1 - Uncharacterized protein conserved in bacteria, at 2,841,687 to 2,842,415 Xcc-8004.2916.1 Xcc-8004.2917.1: Xcc-8004.2917.1 - Valine--pyruvate aminotransferase (EC 2.6.1.66), at 2,842,412 to 2,843,614 Xcc-8004.2917.1 Position (kb) 2841 2842 2843Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2840.851 kb on + strandat 2840.851 kb on + strandat 2840.851 kb on + strandat 2840.851 kb on + strandat 2840.852 kb on - strandat 2840.852 kb on - strandat 2840.852 kb on - strandat 2840.880 kb on + strandat 2840.881 kb on - strandat 2840.897 kb on + strandat 2840.898 kb on - strandat 2841.835 kb on + strand, within Xcc-8004.2916.1at 2841.835 kb on + strand, within Xcc-8004.2916.1at 2841.835 kb on + strand, within Xcc-8004.2916.1at 2841.835 kb on + strand, within Xcc-8004.2916.1at 2841.835 kb on + strand, within Xcc-8004.2916.1at 2841.835 kb on + strand, within Xcc-8004.2916.1at 2841.835 kb on + strand, within Xcc-8004.2916.1at 2841.836 kb on - strand, within Xcc-8004.2916.1at 2841.836 kb on - strand, within Xcc-8004.2916.1at 2841.836 kb on - strand, within Xcc-8004.2916.1at 2841.836 kb on - strand, within Xcc-8004.2916.1at 2841.937 kb on + strand, within Xcc-8004.2916.1at 2841.938 kb on - strand, within Xcc-8004.2916.1at 2841.940 kb on + strand, within Xcc-8004.2916.1at 2841.940 kb on + strand, within Xcc-8004.2916.1at 2841.940 kb on + strand, within Xcc-8004.2916.1at 2841.941 kb on - strand, within Xcc-8004.2916.1at 2841.941 kb on - strand, within Xcc-8004.2916.1at 2841.941 kb on - strand, within Xcc-8004.2916.1at 2841.941 kb on - strand, within Xcc-8004.2916.1at 2841.941 kb on - strand, within Xcc-8004.2916.1at 2842.180 kb on + strand, within Xcc-8004.2916.1at 2842.180 kb on + strand, within Xcc-8004.2916.1at 2842.180 kb on + strand, within Xcc-8004.2916.1at 2842.180 kb on + strand, within Xcc-8004.2916.1at 2842.180 kb on + strand, within Xcc-8004.2916.1at 2842.180 kb on + strand, within Xcc-8004.2916.1at 2842.181 kb on - strand, within Xcc-8004.2916.1at 2842.181 kb on - strand, within Xcc-8004.2916.1at 2842.181 kb on - strand, within Xcc-8004.2916.1at 2842.181 kb on - strand, within Xcc-8004.2916.1at 2842.181 kb on - strand, within Xcc-8004.2916.1at 2842.181 kb on - strand, within Xcc-8004.2916.1at 2842.181 kb on - strand, within Xcc-8004.2916.1at 2842.388 kb on + strandat 2842.388 kb on + strandat 2842.388 kb on + strandat 2842.388 kb on + strandat 2842.388 kb on + strandat 2842.388 kb on + strandat 2842.389 kb on - strandat 2842.389 kb on - strandat 2842.389 kb on - strandat 2842.525 kb on + strandat 2842.525 kb on + strandat 2842.525 kb on + strandat 2842.525 kb on + strandat 2842.525 kb on + strandat 2842.526 kb on - strandat 2842.526 kb on - strandat 2842.526 kb on - strandat 2842.526 kb on - strandat 2842.526 kb on - strandat 2842.526 kb on - strandat 2842.526 kb on - strandat 2842.731 kb on + strand, within Xcc-8004.2917.1at 2842.731 kb on + strand, within Xcc-8004.2917.1at 2842.731 kb on + strand, within Xcc-8004.2917.1at 2842.731 kb on + strand, within Xcc-8004.2917.1at 2842.731 kb on + strand, within Xcc-8004.2917.1at 2842.732 kb on - strand, within Xcc-8004.2917.1at 2842.732 kb on - strand, within Xcc-8004.2917.1at 2842.732 kb on - strand, within Xcc-8004.2917.1at 2842.732 kb on - strand, within Xcc-8004.2917.1at 2842.753 kb on + strand, within Xcc-8004.2917.1at 2842.753 kb on + strand, within Xcc-8004.2917.1at 2842.753 kb on + strand, within Xcc-8004.2917.1at 2842.753 kb on + strand, within Xcc-8004.2917.1at 2842.753 kb on + strand, within Xcc-8004.2917.1at 2842.753 kb on + strand, within Xcc-8004.2917.1at 2842.753 kb on + strand, within Xcc-8004.2917.1at 2842.754 kb on - strand, within Xcc-8004.2917.1at 2842.754 kb on - strand, within Xcc-8004.2917.1at 2842.754 kb on - strand, within Xcc-8004.2917.1at 2842.754 kb on - strand, within Xcc-8004.2917.1at 2842.754 kb on - strand, within Xcc-8004.2917.1at 2842.754 kb on - strand, within Xcc-8004.2917.1at 2842.754 kb on - strand, within Xcc-8004.2917.1at 2842.816 kb on + strand, within Xcc-8004.2917.1at 2842.817 kb on - strand, within Xcc-8004.2917.1at 2842.817 kb on - strand, within Xcc-8004.2917.1at 2842.881 kb on + strand, within Xcc-8004.2917.1at 2842.881 kb on + strand, within Xcc-8004.2917.1at 2842.881 kb on + strand, within Xcc-8004.2917.1at 2842.881 kb on + strand, within Xcc-8004.2917.1at 2842.881 kb on + strand, within Xcc-8004.2917.1at 2842.881 kb on + strand, within Xcc-8004.2917.1at 2842.882 kb on - strand, within Xcc-8004.2917.1at 2842.882 kb on - strand, within Xcc-8004.2917.1at 2842.882 kb on - strand, within Xcc-8004.2917.1at 2842.929 kb on + strand, within Xcc-8004.2917.1at 2842.929 kb on + strand, within Xcc-8004.2917.1at 2842.929 kb on + strand, within Xcc-8004.2917.1at 2842.929 kb on + strand, within Xcc-8004.2917.1at 2842.929 kb on + strand, within Xcc-8004.2917.1at 2842.929 kb on + strand, within Xcc-8004.2917.1at 2842.929 kb on + strand, within Xcc-8004.2917.1at 2842.929 kb on + strand, within Xcc-8004.2917.1at 2842.929 kb on + strand, within Xcc-8004.2917.1at 2842.929 kb on + strand, within Xcc-8004.2917.1at 2842.929 kb on + strand, within Xcc-8004.2917.1at 2842.929 kb on + strand, within Xcc-8004.2917.1at 2842.930 kb on - strand, within Xcc-8004.2917.1at 2842.930 kb on - strand, within Xcc-8004.2917.1at 2842.930 kb on - strand, within Xcc-8004.2917.1at 2842.930 kb on - strand, within Xcc-8004.2917.1at 2842.930 kb on - strand, within Xcc-8004.2917.1at 2842.930 kb on - strand, within Xcc-8004.2917.1at 2842.930 kb on - strand, within Xcc-8004.2917.1at 2842.930 kb on - strand, within Xcc-8004.2917.1at 2842.930 kb on - strand, within Xcc-8004.2917.1at 2842.930 kb on - strand, within Xcc-8004.2917.1at 2842.930 kb on - strand, within Xcc-8004.2917.1at 2842.930 kb on - strand, within Xcc-8004.2917.1at 2842.930 kb on - strand, within Xcc-8004.2917.1at 2842.930 kb on - strand, within Xcc-8004.2917.1at 2842.930 kb on - strand, within Xcc-8004.2917.1at 2842.930 kb on - strand, within Xcc-8004.2917.1at 2842.930 kb on - strand, within Xcc-8004.2917.1at 2842.930 kb on - strand, within Xcc-8004.2917.1at 2842.930 kb on - strand, within Xcc-8004.2917.1at 2842.983 kb on + strand, within Xcc-8004.2917.1at 2842.983 kb on + strand, within Xcc-8004.2917.1at 2842.984 kb on - strand, within Xcc-8004.2917.1at 2842.984 kb on - strand, within Xcc-8004.2917.1at 2842.984 kb on - strand, within Xcc-8004.2917.1at 2842.984 kb on - strand, within Xcc-8004.2917.1at 2842.986 kb on + strand, within Xcc-8004.2917.1at 2842.987 kb on - strand, within Xcc-8004.2917.1at 2843.112 kb on + strand, within Xcc-8004.2917.1at 2843.113 kb on - strand, within Xcc-8004.2917.1at 2843.113 kb on - strand, within Xcc-8004.2917.1at 2843.113 kb on - strand, within Xcc-8004.2917.1at 2843.113 kb on - strand, within Xcc-8004.2917.1at 2843.235 kb on + strand, within Xcc-8004.2917.1at 2843.235 kb on + strand, within Xcc-8004.2917.1at 2843.236 kb on - strand, within Xcc-8004.2917.1at 2843.236 kb on - strand, within Xcc-8004.2917.1at 2843.236 kb on - strand, within Xcc-8004.2917.1at 2843.236 kb on - strand, within Xcc-8004.2917.1at 2843.236 kb on - strand, within Xcc-8004.2917.1at 2843.236 kb on - strand, within Xcc-8004.2917.1at 2843.279 kb on + strand, within Xcc-8004.2917.1at 2843.279 kb on + strand, within Xcc-8004.2917.1at 2843.279 kb on + strand, within Xcc-8004.2917.1at 2843.279 kb on + strand, within Xcc-8004.2917.1at 2843.279 kb on + strand, within Xcc-8004.2917.1at 2843.279 kb on + strand, within Xcc-8004.2917.1at 2843.279 kb on + strand, within Xcc-8004.2917.1at 2843.279 kb on + strand, within Xcc-8004.2917.1at 2843.279 kb on + strand, within Xcc-8004.2917.1at 2843.279 kb on + strand, within Xcc-8004.2917.1at 2843.279 kb on + strand, within Xcc-8004.2917.1at 2843.279 kb on + strand, within Xcc-8004.2917.1at 2843.279 kb on + strand, within Xcc-8004.2917.1at 2843.279 kb on + strand, within Xcc-8004.2917.1at 2843.279 kb on + strand, within Xcc-8004.2917.1at 2843.280 kb on - strand, within Xcc-8004.2917.1at 2843.280 kb on - strand, within Xcc-8004.2917.1at 2843.280 kb on - strand, within Xcc-8004.2917.1at 2843.280 kb on - strand, within Xcc-8004.2917.1at 2843.397 kb on + strand, within Xcc-8004.2917.1at 2843.397 kb on + strand, within Xcc-8004.2917.1at 2843.397 kb on + strand, within Xcc-8004.2917.1at 2843.397 kb on + strand, within Xcc-8004.2917.1at 2843.398 kb on - strand, within Xcc-8004.2917.1at 2843.398 kb on - strand, within Xcc-8004.2917.1at 2843.398 kb on - strand, within Xcc-8004.2917.1at 2843.398 kb on - strand, within Xcc-8004.2917.1at 2843.398 kb on - strand, within Xcc-8004.2917.1at 2843.415 kb on + strand, within Xcc-8004.2917.1at 2843.415 kb on + strand, within Xcc-8004.2917.1at 2843.415 kb on + strand, within Xcc-8004.2917.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
remove
2,840,851 + -0.0
2,840,851 + -0.2
2,840,851 + -1.0
2,840,851 + -0.4
2,840,852 - -0.0
2,840,852 - -0.2
2,840,852 - -0.5
2,840,880 + +0.3
2,840,881 - -0.1
2,840,897 + -0.1
2,840,898 - +1.0
2,841,835 + Xcc-8004.2916.1 0.20 +0.7
2,841,835 + Xcc-8004.2916.1 0.20 +0.1
2,841,835 + Xcc-8004.2916.1 0.20 -2.4
2,841,835 + Xcc-8004.2916.1 0.20 -1.0
2,841,835 + Xcc-8004.2916.1 0.20 +0.5
2,841,835 + Xcc-8004.2916.1 0.20 -0.3
2,841,835 + Xcc-8004.2916.1 0.20 -0.9
2,841,836 - Xcc-8004.2916.1 0.20 +2.3
2,841,836 - Xcc-8004.2916.1 0.20 -1.0
2,841,836 - Xcc-8004.2916.1 0.20 -1.8
2,841,836 - Xcc-8004.2916.1 0.20 -0.4
2,841,937 + Xcc-8004.2916.1 0.34 +0.3
2,841,938 - Xcc-8004.2916.1 0.34 +1.1
2,841,940 + Xcc-8004.2916.1 0.35 -0.0
2,841,940 + Xcc-8004.2916.1 0.35 -1.3
2,841,940 + Xcc-8004.2916.1 0.35 -1.4
2,841,941 - Xcc-8004.2916.1 0.35 +0.5
2,841,941 - Xcc-8004.2916.1 0.35 +0.0
2,841,941 - Xcc-8004.2916.1 0.35 +0.5
2,841,941 - Xcc-8004.2916.1 0.35 -0.9
2,841,941 - Xcc-8004.2916.1 0.35 -0.2
2,842,180 + Xcc-8004.2916.1 0.68 -0.2
2,842,180 + Xcc-8004.2916.1 0.68 -0.2
2,842,180 + Xcc-8004.2916.1 0.68 -1.0
2,842,180 + Xcc-8004.2916.1 0.68 -1.4
2,842,180 + Xcc-8004.2916.1 0.68 -1.0
2,842,180 + Xcc-8004.2916.1 0.68 +0.3
2,842,181 - Xcc-8004.2916.1 0.68 +1.5
2,842,181 - Xcc-8004.2916.1 0.68 -1.2
2,842,181 - Xcc-8004.2916.1 0.68 -1.0
2,842,181 - Xcc-8004.2916.1 0.68 +0.3
2,842,181 - Xcc-8004.2916.1 0.68 -0.9
2,842,181 - Xcc-8004.2916.1 0.68 -0.2
2,842,181 - Xcc-8004.2916.1 0.68 +0.7
2,842,388 + +0.1
2,842,388 + +0.2
2,842,388 + -1.2
2,842,388 + -0.4
2,842,388 + -0.6
2,842,388 + -0.9
2,842,389 - -0.4
2,842,389 - +0.3
2,842,389 - -0.2
2,842,525 + -0.2
2,842,525 + -1.3
2,842,525 + +0.4
2,842,525 + -1.3
2,842,525 + +0.1
2,842,526 - +0.0
2,842,526 - -0.3
2,842,526 - +0.5
2,842,526 - -0.5
2,842,526 - -0.6
2,842,526 - -0.4
2,842,526 - -0.2
2,842,731 + Xcc-8004.2917.1 0.27 -2.1
2,842,731 + Xcc-8004.2917.1 0.27 +1.7
2,842,731 + Xcc-8004.2917.1 0.27 +0.8
2,842,731 + Xcc-8004.2917.1 0.27 +1.7
2,842,731 + Xcc-8004.2917.1 0.27 -0.8
2,842,732 - Xcc-8004.2917.1 0.27 +1.2
2,842,732 - Xcc-8004.2917.1 0.27 +1.3
2,842,732 - Xcc-8004.2917.1 0.27 -0.2
2,842,732 - Xcc-8004.2917.1 0.27 +3.1
2,842,753 + Xcc-8004.2917.1 0.28 -1.0
2,842,753 + Xcc-8004.2917.1 0.28 -0.7
2,842,753 + Xcc-8004.2917.1 0.28 +1.8
2,842,753 + Xcc-8004.2917.1 0.28 -0.4
2,842,753 + Xcc-8004.2917.1 0.28 -0.1
2,842,753 + Xcc-8004.2917.1 0.28 -0.0
2,842,753 + Xcc-8004.2917.1 0.28 -1.3
2,842,754 - Xcc-8004.2917.1 0.28 -0.5
2,842,754 - Xcc-8004.2917.1 0.28 +0.1
2,842,754 - Xcc-8004.2917.1 0.28 -0.1
2,842,754 - Xcc-8004.2917.1 0.28 -2.0
2,842,754 - Xcc-8004.2917.1 0.28 -2.5
2,842,754 - Xcc-8004.2917.1 0.28 +1.6
2,842,754 - Xcc-8004.2917.1 0.28 -0.9
2,842,816 + Xcc-8004.2917.1 0.34 -0.3
2,842,817 - Xcc-8004.2917.1 0.34 -0.4
2,842,817 - Xcc-8004.2917.1 0.34 -0.4
2,842,881 + Xcc-8004.2917.1 0.39 -1.2
2,842,881 + Xcc-8004.2917.1 0.39 +0.2
2,842,881 + Xcc-8004.2917.1 0.39 -2.0
2,842,881 + Xcc-8004.2917.1 0.39 -1.2
2,842,881 + Xcc-8004.2917.1 0.39 +0.3
2,842,881 + Xcc-8004.2917.1 0.39 -1.0
2,842,882 - Xcc-8004.2917.1 0.39 +0.7
2,842,882 - Xcc-8004.2917.1 0.39 +0.4
2,842,882 - Xcc-8004.2917.1 0.39 -1.5
2,842,929 + Xcc-8004.2917.1 0.43 +1.3
2,842,929 + Xcc-8004.2917.1 0.43 +0.4
2,842,929 + Xcc-8004.2917.1 0.43 +0.7
2,842,929 + Xcc-8004.2917.1 0.43 +0.8
2,842,929 + Xcc-8004.2917.1 0.43 +0.8
2,842,929 + Xcc-8004.2917.1 0.43 -0.0
2,842,929 + Xcc-8004.2917.1 0.43 +1.1
2,842,929 + Xcc-8004.2917.1 0.43 +1.6
2,842,929 + Xcc-8004.2917.1 0.43 -0.3
2,842,929 + Xcc-8004.2917.1 0.43 -0.9
2,842,929 + Xcc-8004.2917.1 0.43 -0.2
2,842,929 + Xcc-8004.2917.1 0.43 +0.1
2,842,930 - Xcc-8004.2917.1 0.43 -0.1
2,842,930 - Xcc-8004.2917.1 0.43 -1.4
2,842,930 - Xcc-8004.2917.1 0.43 +0.9
2,842,930 - Xcc-8004.2917.1 0.43 -0.3
2,842,930 - Xcc-8004.2917.1 0.43 +0.9
2,842,930 - Xcc-8004.2917.1 0.43 +0.2
2,842,930 - Xcc-8004.2917.1 0.43 +2.1
2,842,930 - Xcc-8004.2917.1 0.43 -0.4
2,842,930 - Xcc-8004.2917.1 0.43 +1.2
2,842,930 - Xcc-8004.2917.1 0.43 +0.7
2,842,930 - Xcc-8004.2917.1 0.43 +1.2
2,842,930 - Xcc-8004.2917.1 0.43 +2.8
2,842,930 - Xcc-8004.2917.1 0.43 +0.3
2,842,930 - Xcc-8004.2917.1 0.43 -0.9
2,842,930 - Xcc-8004.2917.1 0.43 -0.7
2,842,930 - Xcc-8004.2917.1 0.43 +0.3
2,842,930 - Xcc-8004.2917.1 0.43 -1.8
2,842,930 - Xcc-8004.2917.1 0.43 +0.2
2,842,930 - Xcc-8004.2917.1 0.43 -1.7
2,842,983 + Xcc-8004.2917.1 0.47 +0.1
2,842,983 + Xcc-8004.2917.1 0.47 -1.9
2,842,984 - Xcc-8004.2917.1 0.48 -0.6
2,842,984 - Xcc-8004.2917.1 0.48 -0.9
2,842,984 - Xcc-8004.2917.1 0.48 -1.3
2,842,984 - Xcc-8004.2917.1 0.48 -1.2
2,842,986 + Xcc-8004.2917.1 0.48 -0.1
2,842,987 - Xcc-8004.2917.1 0.48 +0.3
2,843,112 + Xcc-8004.2917.1 0.58 +0.9
2,843,113 - Xcc-8004.2917.1 0.58 +0.2
2,843,113 - Xcc-8004.2917.1 0.58 -0.9
2,843,113 - Xcc-8004.2917.1 0.58 +1.5
2,843,113 - Xcc-8004.2917.1 0.58 -0.3
2,843,235 + Xcc-8004.2917.1 0.68 +0.4
2,843,235 + Xcc-8004.2917.1 0.68 -1.3
2,843,236 - Xcc-8004.2917.1 0.68 +0.5
2,843,236 - Xcc-8004.2917.1 0.68 -0.5
2,843,236 - Xcc-8004.2917.1 0.68 -1.8
2,843,236 - Xcc-8004.2917.1 0.68 +1.4
2,843,236 - Xcc-8004.2917.1 0.68 +0.2
2,843,236 - Xcc-8004.2917.1 0.68 +0.1
2,843,279 + Xcc-8004.2917.1 0.72 +1.7
2,843,279 + Xcc-8004.2917.1 0.72 +0.4
2,843,279 + Xcc-8004.2917.1 0.72 -0.5
2,843,279 + Xcc-8004.2917.1 0.72 +1.1
2,843,279 + Xcc-8004.2917.1 0.72 -0.7
2,843,279 + Xcc-8004.2917.1 0.72 -1.7
2,843,279 + Xcc-8004.2917.1 0.72 -2.6
2,843,279 + Xcc-8004.2917.1 0.72 +0.5
2,843,279 + Xcc-8004.2917.1 0.72 -0.2
2,843,279 + Xcc-8004.2917.1 0.72 +0.4
2,843,279 + Xcc-8004.2917.1 0.72 +0.7
2,843,279 + Xcc-8004.2917.1 0.72 -0.2
2,843,279 + Xcc-8004.2917.1 0.72 -1.8
2,843,279 + Xcc-8004.2917.1 0.72 +0.5
2,843,279 + Xcc-8004.2917.1 0.72 +0.6
2,843,280 - Xcc-8004.2917.1 0.72 -0.0
2,843,280 - Xcc-8004.2917.1 0.72 +1.5
2,843,280 - Xcc-8004.2917.1 0.72 -0.1
2,843,280 - Xcc-8004.2917.1 0.72 +0.8
2,843,397 + Xcc-8004.2917.1 0.82 +1.1
2,843,397 + Xcc-8004.2917.1 0.82 +1.3
2,843,397 + Xcc-8004.2917.1 0.82 +3.4
2,843,397 + Xcc-8004.2917.1 0.82 +1.2
2,843,398 - Xcc-8004.2917.1 0.82 -0.5
2,843,398 - Xcc-8004.2917.1 0.82 -0.6
2,843,398 - Xcc-8004.2917.1 0.82 -0.1
2,843,398 - Xcc-8004.2917.1 0.82 +0.2
2,843,398 - Xcc-8004.2917.1 0.82 +0.7
2,843,415 + Xcc-8004.2917.1 0.83 -1.3
2,843,415 + Xcc-8004.2917.1 0.83 -1.5
2,843,415 + Xcc-8004.2917.1 0.83 +1.9

Or see this region's nucleotide sequence