Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2652.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.2651.1 and Xcc-8004.2652.1 are separated by 83 nucleotidesXcc-8004.2652.1 and Xcc-8004.2653.1 are separated by 429 nucleotidesXcc-8004.2653.1 and Xcc-8004.2654.1 overlap by 1 nucleotides Xcc-8004.2651.1: Xcc-8004.2651.1 - histidine kinase/response regulator hybrid protein, at 2,554,121 to 2,555,437 Xcc-8004.2651.1 Xcc-8004.2652.1: Xcc-8004.2652.1 - response regulator, at 2,555,521 to 2,555,889 Xcc-8004.2652.1 Xcc-8004.2653.1: Xcc-8004.2653.1 - hypothetical protein, at 2,556,319 to 2,556,555 Xcc-8004.2653.1 Xcc-8004.2654.1: Xcc-8004.2654.1 - FIG026426: Hypothetical protein, at 2,556,555 to 2,556,863 Xcc-8004.2654.1 Position (kb) 2555 2556Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2554.572 kb on + strand, within Xcc-8004.2651.1at 2554.572 kb on - strand, within Xcc-8004.2651.1at 2554.588 kb on + strand, within Xcc-8004.2651.1at 2554.588 kb on + strand, within Xcc-8004.2651.1at 2554.588 kb on + strand, within Xcc-8004.2651.1at 2554.646 kb on + strand, within Xcc-8004.2651.1at 2554.646 kb on + strand, within Xcc-8004.2651.1at 2554.647 kb on - strand, within Xcc-8004.2651.1at 2554.663 kb on - strand, within Xcc-8004.2651.1at 2554.663 kb on - strand, within Xcc-8004.2651.1at 2554.663 kb on - strand, within Xcc-8004.2651.1at 2555.183 kb on - strand, within Xcc-8004.2651.1at 2555.349 kb on - strandat 2555.393 kb on + strandat 2555.393 kb on + strandat 2555.446 kb on + strandat 2555.446 kb on + strandat 2555.446 kb on + strandat 2555.446 kb on + strandat 2555.446 kb on + strandat 2555.446 kb on + strandat 2555.447 kb on - strandat 2555.447 kb on - strandat 2555.447 kb on - strandat 2555.452 kb on - strandat 2555.452 kb on - strandat 2555.457 kb on + strandat 2555.457 kb on + strandat 2555.487 kb on - strandat 2555.492 kb on + strandat 2555.723 kb on - strand, within Xcc-8004.2652.1at 2555.723 kb on - strand, within Xcc-8004.2652.1at 2555.742 kb on - strand, within Xcc-8004.2652.1at 2556.024 kb on + strandat 2556.126 kb on + strandat 2556.127 kb on - strandat 2556.171 kb on - strandat 2556.175 kb on + strandat 2556.176 kb on - strandat 2556.176 kb on - strandat 2556.420 kb on + strand, within Xcc-8004.2653.1at 2556.421 kb on - strand, within Xcc-8004.2653.1at 2556.423 kb on + strand, within Xcc-8004.2653.1at 2556.423 kb on + strand, within Xcc-8004.2653.1at 2556.423 kb on + strand, within Xcc-8004.2653.1at 2556.423 kb on + strand, within Xcc-8004.2653.1at 2556.423 kb on + strand, within Xcc-8004.2653.1at 2556.443 kb on - strand, within Xcc-8004.2653.1at 2556.446 kb on + strand, within Xcc-8004.2653.1at 2556.564 kb on + strandat 2556.565 kb on - strandat 2556.565 kb on - strandat 2556.606 kb on + strand, within Xcc-8004.2654.1at 2556.606 kb on + strand, within Xcc-8004.2654.1at 2556.606 kb on + strand, within Xcc-8004.2654.1at 2556.606 kb on + strand, within Xcc-8004.2654.1at 2556.606 kb on + strand, within Xcc-8004.2654.1at 2556.606 kb on + strand, within Xcc-8004.2654.1at 2556.606 kb on + strand, within Xcc-8004.2654.1at 2556.607 kb on - strand, within Xcc-8004.2654.1at 2556.607 kb on - strand, within Xcc-8004.2654.1at 2556.607 kb on - strand, within Xcc-8004.2654.1at 2556.607 kb on - strand, within Xcc-8004.2654.1at 2556.607 kb on - strand, within Xcc-8004.2654.1at 2556.607 kb on - strand, within Xcc-8004.2654.1at 2556.609 kb on - strand, within Xcc-8004.2654.1at 2556.765 kb on - strand, within Xcc-8004.2654.1at 2556.765 kb on - strand, within Xcc-8004.2654.1at 2556.765 kb on - strand, within Xcc-8004.2654.1at 2556.765 kb on - strand, within Xcc-8004.2654.1at 2556.806 kb on + strand, within Xcc-8004.2654.1at 2556.862 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
remove
2,554,572 + Xcc-8004.2651.1 0.34 -1.0
2,554,572 - Xcc-8004.2651.1 0.34 +0.4
2,554,588 + Xcc-8004.2651.1 0.35 +0.8
2,554,588 + Xcc-8004.2651.1 0.35 +0.1
2,554,588 + Xcc-8004.2651.1 0.35 -0.4
2,554,646 + Xcc-8004.2651.1 0.40 +0.8
2,554,646 + Xcc-8004.2651.1 0.40 +0.2
2,554,647 - Xcc-8004.2651.1 0.40 -1.3
2,554,663 - Xcc-8004.2651.1 0.41 +0.0
2,554,663 - Xcc-8004.2651.1 0.41 +0.3
2,554,663 - Xcc-8004.2651.1 0.41 -0.3
2,555,183 - Xcc-8004.2651.1 0.81 -0.6
2,555,349 - -0.1
2,555,393 + +0.8
2,555,393 + +0.2
2,555,446 + -0.1
2,555,446 + -0.2
2,555,446 + -0.1
2,555,446 + +0.5
2,555,446 + +0.2
2,555,446 + +1.7
2,555,447 - -3.8
2,555,447 - +0.4
2,555,447 - -2.1
2,555,452 - -1.5
2,555,452 - +0.1
2,555,457 + +0.3
2,555,457 + -0.4
2,555,487 - -1.7
2,555,492 + -0.2
2,555,723 - Xcc-8004.2652.1 0.55 -1.3
2,555,723 - Xcc-8004.2652.1 0.55 -2.1
2,555,742 - Xcc-8004.2652.1 0.60 -2.4
2,556,024 + -0.7
2,556,126 + -0.3
2,556,127 - +2.1
2,556,171 - +0.2
2,556,175 + -0.3
2,556,176 - +1.3
2,556,176 - +0.4
2,556,420 + Xcc-8004.2653.1 0.43 -1.5
2,556,421 - Xcc-8004.2653.1 0.43 -0.5
2,556,423 + Xcc-8004.2653.1 0.44 -0.5
2,556,423 + Xcc-8004.2653.1 0.44 -0.4
2,556,423 + Xcc-8004.2653.1 0.44 -0.5
2,556,423 + Xcc-8004.2653.1 0.44 +0.7
2,556,423 + Xcc-8004.2653.1 0.44 +1.5
2,556,443 - Xcc-8004.2653.1 0.52 +1.2
2,556,446 + Xcc-8004.2653.1 0.54 -1.2
2,556,564 + -0.4
2,556,565 - +0.5
2,556,565 - -0.8
2,556,606 + Xcc-8004.2654.1 0.17 +0.3
2,556,606 + Xcc-8004.2654.1 0.17 +0.3
2,556,606 + Xcc-8004.2654.1 0.17 -1.1
2,556,606 + Xcc-8004.2654.1 0.17 +1.1
2,556,606 + Xcc-8004.2654.1 0.17 -0.8
2,556,606 + Xcc-8004.2654.1 0.17 +0.6
2,556,606 + Xcc-8004.2654.1 0.17 +0.0
2,556,607 - Xcc-8004.2654.1 0.17 +0.4
2,556,607 - Xcc-8004.2654.1 0.17 -0.0
2,556,607 - Xcc-8004.2654.1 0.17 -0.1
2,556,607 - Xcc-8004.2654.1 0.17 -1.7
2,556,607 - Xcc-8004.2654.1 0.17 +0.3
2,556,607 - Xcc-8004.2654.1 0.17 +0.7
2,556,609 - Xcc-8004.2654.1 0.17 -1.6
2,556,765 - Xcc-8004.2654.1 0.68 +0.2
2,556,765 - Xcc-8004.2654.1 0.68 -0.0
2,556,765 - Xcc-8004.2654.1 0.68 -1.3
2,556,765 - Xcc-8004.2654.1 0.68 -0.0
2,556,806 + Xcc-8004.2654.1 0.81 +1.3
2,556,862 - -0.5

Or see this region's nucleotide sequence