Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1790.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1789.1 and Xcc-8004.1790.1 are separated by 13 nucleotidesXcc-8004.1790.1 and Xcc-8004.1791.1 are separated by 237 nucleotidesXcc-8004.1791.1 and Xcc-8004.1792.1 are separated by 292 nucleotides Xcc-8004.1789.1: Xcc-8004.1789.1 - Glutamyl-tRNA synthetase (EC 6.1.1.17), at 1,723,717 to 1,725,120 Xcc-8004.1789.1 Xcc-8004.1790.1: Xcc-8004.1790.1 - Zinc uptake regulation protein ZUR, at 1,725,134 to 1,725,652 Xcc-8004.1790.1 Xcc-8004.1791.1: Xcc-8004.1791.1 - hypothetical protein, at 1,725,890 to 1,726,159 Xcc-8004.1791.1 Xcc-8004.1792.1: Xcc-8004.1792.1 - Transcription regulator of multidrug efflux pump operon, TetR (AcrR) family, at 1,726,452 to 1,727,069 Xcc-8004.1792.1 Position (kb) 1725 1726Strain fitness (log2 ratio) -2 -1 0 1 2at 1725.133 kb on + strandat 1725.133 kb on + strandat 1725.133 kb on + strandat 1725.285 kb on + strand, within Xcc-8004.1790.1at 1725.285 kb on + strand, within Xcc-8004.1790.1at 1725.286 kb on - strand, within Xcc-8004.1790.1at 1725.286 kb on - strand, within Xcc-8004.1790.1at 1725.286 kb on - strand, within Xcc-8004.1790.1at 1725.286 kb on - strand, within Xcc-8004.1790.1at 1725.286 kb on - strand, within Xcc-8004.1790.1at 1725.326 kb on + strand, within Xcc-8004.1790.1at 1725.685 kb on + strandat 1725.685 kb on + strandat 1725.685 kb on + strandat 1725.685 kb on + strandat 1725.686 kb on - strandat 1725.686 kb on - strandat 1725.686 kb on - strandat 1725.727 kb on + strandat 1725.728 kb on - strandat 1725.847 kb on + strandat 1725.848 kb on - strandat 1725.848 kb on - strandat 1725.876 kb on + strandat 1725.896 kb on + strandat 1725.934 kb on + strand, within Xcc-8004.1791.1at 1725.934 kb on + strand, within Xcc-8004.1791.1at 1725.935 kb on - strand, within Xcc-8004.1791.1at 1725.935 kb on - strand, within Xcc-8004.1791.1at 1725.935 kb on - strand, within Xcc-8004.1791.1at 1725.948 kb on + strand, within Xcc-8004.1791.1at 1725.948 kb on + strand, within Xcc-8004.1791.1at 1725.948 kb on + strand, within Xcc-8004.1791.1at 1725.948 kb on + strand, within Xcc-8004.1791.1at 1725.948 kb on + strand, within Xcc-8004.1791.1at 1725.948 kb on + strand, within Xcc-8004.1791.1at 1725.948 kb on + strand, within Xcc-8004.1791.1at 1725.948 kb on + strand, within Xcc-8004.1791.1at 1725.949 kb on - strand, within Xcc-8004.1791.1at 1725.949 kb on - strand, within Xcc-8004.1791.1at 1725.949 kb on - strand, within Xcc-8004.1791.1at 1725.949 kb on - strand, within Xcc-8004.1791.1at 1725.952 kb on + strand, within Xcc-8004.1791.1at 1725.952 kb on + strand, within Xcc-8004.1791.1at 1725.952 kb on + strand, within Xcc-8004.1791.1at 1725.952 kb on + strand, within Xcc-8004.1791.1at 1725.952 kb on + strand, within Xcc-8004.1791.1at 1725.953 kb on - strand, within Xcc-8004.1791.1at 1725.953 kb on - strand, within Xcc-8004.1791.1at 1725.953 kb on - strand, within Xcc-8004.1791.1at 1725.975 kb on + strand, within Xcc-8004.1791.1at 1725.975 kb on + strand, within Xcc-8004.1791.1at 1725.975 kb on + strand, within Xcc-8004.1791.1at 1725.975 kb on + strand, within Xcc-8004.1791.1at 1725.975 kb on + strand, within Xcc-8004.1791.1at 1725.975 kb on + strand, within Xcc-8004.1791.1at 1725.975 kb on + strand, within Xcc-8004.1791.1at 1725.976 kb on - strand, within Xcc-8004.1791.1at 1725.976 kb on - strand, within Xcc-8004.1791.1at 1725.976 kb on - strand, within Xcc-8004.1791.1at 1725.976 kb on - strand, within Xcc-8004.1791.1at 1725.976 kb on - strand, within Xcc-8004.1791.1at 1725.976 kb on - strand, within Xcc-8004.1791.1at 1725.976 kb on - strand, within Xcc-8004.1791.1at 1725.976 kb on - strand, within Xcc-8004.1791.1at 1726.024 kb on - strand, within Xcc-8004.1791.1at 1726.024 kb on - strand, within Xcc-8004.1791.1at 1726.058 kb on + strand, within Xcc-8004.1791.1at 1726.059 kb on - strand, within Xcc-8004.1791.1at 1726.198 kb on - strandat 1726.198 kb on - strandat 1726.198 kb on - strandat 1726.198 kb on - strandat 1726.198 kb on - strandat 1726.289 kb on + strandat 1726.289 kb on + strandat 1726.289 kb on + strandat 1726.289 kb on + strandat 1726.290 kb on - strandat 1726.290 kb on - strandat 1726.290 kb on - strandat 1726.290 kb on - strandat 1726.290 kb on - strandat 1726.290 kb on - strandat 1726.290 kb on - strandat 1726.290 kb on - strandat 1726.305 kb on + strandat 1726.526 kb on - strand, within Xcc-8004.1792.1at 1726.526 kb on - strand, within Xcc-8004.1792.1at 1726.616 kb on + strand, within Xcc-8004.1792.1at 1726.616 kb on + strand, within Xcc-8004.1792.1at 1726.616 kb on + strand, within Xcc-8004.1792.1at 1726.616 kb on + strand, within Xcc-8004.1792.1at 1726.616 kb on + strand, within Xcc-8004.1792.1at 1726.616 kb on + strand, within Xcc-8004.1792.1at 1726.617 kb on - strand, within Xcc-8004.1792.1at 1726.617 kb on - strand, within Xcc-8004.1792.1at 1726.617 kb on - strand, within Xcc-8004.1792.1at 1726.617 kb on - strand, within Xcc-8004.1792.1at 1726.617 kb on - strand, within Xcc-8004.1792.1at 1726.617 kb on - strand, within Xcc-8004.1792.1at 1726.617 kb on - strand, within Xcc-8004.1792.1at 1726.617 kb on - strand, within Xcc-8004.1792.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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1,725,133 + -0.3
1,725,133 + -0.8
1,725,133 + -0.7
1,725,285 + Xcc-8004.1790.1 0.29 -0.2
1,725,285 + Xcc-8004.1790.1 0.29 -1.9
1,725,286 - Xcc-8004.1790.1 0.29 -1.4
1,725,286 - Xcc-8004.1790.1 0.29 -0.7
1,725,286 - Xcc-8004.1790.1 0.29 -1.8
1,725,286 - Xcc-8004.1790.1 0.29 -1.4
1,725,286 - Xcc-8004.1790.1 0.29 +1.4
1,725,326 + Xcc-8004.1790.1 0.37 -0.5
1,725,685 + -0.0
1,725,685 + +1.1
1,725,685 + +0.2
1,725,685 + -0.4
1,725,686 - +2.1
1,725,686 - +1.2
1,725,686 - -0.2
1,725,727 + -1.0
1,725,728 - -0.2
1,725,847 + +0.4
1,725,848 - -0.5
1,725,848 - -1.0
1,725,876 + +1.0
1,725,896 + +0.6
1,725,934 + Xcc-8004.1791.1 0.16 +1.0
1,725,934 + Xcc-8004.1791.1 0.16 -0.1
1,725,935 - Xcc-8004.1791.1 0.17 -0.0
1,725,935 - Xcc-8004.1791.1 0.17 -0.4
1,725,935 - Xcc-8004.1791.1 0.17 -0.2
1,725,948 + Xcc-8004.1791.1 0.21 -0.6
1,725,948 + Xcc-8004.1791.1 0.21 +1.1
1,725,948 + Xcc-8004.1791.1 0.21 -2.3
1,725,948 + Xcc-8004.1791.1 0.21 -0.0
1,725,948 + Xcc-8004.1791.1 0.21 +1.3
1,725,948 + Xcc-8004.1791.1 0.21 +1.2
1,725,948 + Xcc-8004.1791.1 0.21 +1.0
1,725,948 + Xcc-8004.1791.1 0.21 +1.6
1,725,949 - Xcc-8004.1791.1 0.22 -2.3
1,725,949 - Xcc-8004.1791.1 0.22 +0.1
1,725,949 - Xcc-8004.1791.1 0.22 +0.7
1,725,949 - Xcc-8004.1791.1 0.22 +2.4
1,725,952 + Xcc-8004.1791.1 0.23 +0.2
1,725,952 + Xcc-8004.1791.1 0.23 -0.5
1,725,952 + Xcc-8004.1791.1 0.23 -0.1
1,725,952 + Xcc-8004.1791.1 0.23 +0.1
1,725,952 + Xcc-8004.1791.1 0.23 -0.1
1,725,953 - Xcc-8004.1791.1 0.23 -1.0
1,725,953 - Xcc-8004.1791.1 0.23 +0.8
1,725,953 - Xcc-8004.1791.1 0.23 -0.3
1,725,975 + Xcc-8004.1791.1 0.31 -0.7
1,725,975 + Xcc-8004.1791.1 0.31 +0.2
1,725,975 + Xcc-8004.1791.1 0.31 +0.3
1,725,975 + Xcc-8004.1791.1 0.31 -0.7
1,725,975 + Xcc-8004.1791.1 0.31 -2.2
1,725,975 + Xcc-8004.1791.1 0.31 +0.2
1,725,975 + Xcc-8004.1791.1 0.31 -0.4
1,725,976 - Xcc-8004.1791.1 0.32 -0.0
1,725,976 - Xcc-8004.1791.1 0.32 +0.8
1,725,976 - Xcc-8004.1791.1 0.32 -1.5
1,725,976 - Xcc-8004.1791.1 0.32 -0.1
1,725,976 - Xcc-8004.1791.1 0.32 +0.3
1,725,976 - Xcc-8004.1791.1 0.32 -2.1
1,725,976 - Xcc-8004.1791.1 0.32 -1.0
1,725,976 - Xcc-8004.1791.1 0.32 -1.4
1,726,024 - Xcc-8004.1791.1 0.50 -0.9
1,726,024 - Xcc-8004.1791.1 0.50 -0.1
1,726,058 + Xcc-8004.1791.1 0.62 +1.5
1,726,059 - Xcc-8004.1791.1 0.63 +0.2
1,726,198 - -0.1
1,726,198 - +0.2
1,726,198 - -2.7
1,726,198 - +1.1
1,726,198 - -0.4
1,726,289 + +0.4
1,726,289 + -2.4
1,726,289 + +2.4
1,726,289 + +1.0
1,726,290 - -0.0
1,726,290 - +0.4
1,726,290 - -2.0
1,726,290 - +0.6
1,726,290 - +2.2
1,726,290 - -0.3
1,726,290 - +1.1
1,726,290 - -0.0
1,726,305 + +0.9
1,726,526 - Xcc-8004.1792.1 0.12 -1.4
1,726,526 - Xcc-8004.1792.1 0.12 -0.6
1,726,616 + Xcc-8004.1792.1 0.27 +0.1
1,726,616 + Xcc-8004.1792.1 0.27 -0.3
1,726,616 + Xcc-8004.1792.1 0.27 -0.8
1,726,616 + Xcc-8004.1792.1 0.27 -0.9
1,726,616 + Xcc-8004.1792.1 0.27 -1.0
1,726,616 + Xcc-8004.1792.1 0.27 -0.6
1,726,617 - Xcc-8004.1792.1 0.27 -0.4
1,726,617 - Xcc-8004.1792.1 0.27 -0.9
1,726,617 - Xcc-8004.1792.1 0.27 +1.0
1,726,617 - Xcc-8004.1792.1 0.27 +0.2
1,726,617 - Xcc-8004.1792.1 0.27 -1.2
1,726,617 - Xcc-8004.1792.1 0.27 -0.1
1,726,617 - Xcc-8004.1792.1 0.27 -0.8
1,726,617 - Xcc-8004.1792.1 0.27 -0.5

Or see this region's nucleotide sequence