Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1702.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1700.1 and Xcc-8004.1701.1 are separated by 15 nucleotidesXcc-8004.1701.1 and Xcc-8004.1702.1 are separated by 29 nucleotidesXcc-8004.1702.1 and Xcc-8004.1703.1 are separated by 107 nucleotidesXcc-8004.1703.1 and Xcc-8004.1704.1 are separated by 100 nucleotides Xcc-8004.1700.1: Xcc-8004.1700.1 - Iron-sulfur cluster assembly protein SufB, at 1,633,766 to 1,635,223 Xcc-8004.1700.1 Xcc-8004.1701.1: Xcc-8004.1701.1 - Iron-sulfur cluster regulator IscR, at 1,635,239 to 1,635,841 Xcc-8004.1701.1 Xcc-8004.1702.1: Xcc-8004.1702.1 - Proteins containing SET domain, at 1,635,871 to 1,636,338 Xcc-8004.1702.1 Xcc-8004.1703.1: Xcc-8004.1703.1 - ThiJ/PfpI family protein, at 1,636,446 to 1,636,988 Xcc-8004.1703.1 Xcc-8004.1704.1: Xcc-8004.1704.1 - FIG01209781: hypothetical protein, at 1,637,089 to 1,637,685 Xcc-8004.1704.1 Position (kb) 1635 1636 1637Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1635.348 kb on - strand, within Xcc-8004.1701.1at 1635.348 kb on - strand, within Xcc-8004.1701.1at 1635.348 kb on - strand, within Xcc-8004.1701.1at 1635.904 kb on - strandat 1635.964 kb on + strand, within Xcc-8004.1702.1at 1635.965 kb on - strand, within Xcc-8004.1702.1at 1636.045 kb on - strand, within Xcc-8004.1702.1at 1636.060 kb on + strand, within Xcc-8004.1702.1at 1636.060 kb on + strand, within Xcc-8004.1702.1at 1636.060 kb on + strand, within Xcc-8004.1702.1at 1636.060 kb on + strand, within Xcc-8004.1702.1at 1636.060 kb on + strand, within Xcc-8004.1702.1at 1636.060 kb on + strand, within Xcc-8004.1702.1at 1636.061 kb on - strand, within Xcc-8004.1702.1at 1636.061 kb on - strand, within Xcc-8004.1702.1at 1636.078 kb on + strand, within Xcc-8004.1702.1at 1636.079 kb on - strand, within Xcc-8004.1702.1at 1636.079 kb on - strand, within Xcc-8004.1702.1at 1636.225 kb on + strand, within Xcc-8004.1702.1at 1636.225 kb on + strand, within Xcc-8004.1702.1at 1636.225 kb on + strand, within Xcc-8004.1702.1at 1636.225 kb on + strand, within Xcc-8004.1702.1at 1636.225 kb on + strand, within Xcc-8004.1702.1at 1636.226 kb on - strand, within Xcc-8004.1702.1at 1636.226 kb on - strand, within Xcc-8004.1702.1at 1636.226 kb on - strand, within Xcc-8004.1702.1at 1636.226 kb on - strand, within Xcc-8004.1702.1at 1636.227 kb on + strand, within Xcc-8004.1702.1at 1636.232 kb on - strand, within Xcc-8004.1702.1at 1636.410 kb on - strandat 1636.903 kb on + strand, within Xcc-8004.1703.1at 1636.944 kb on - strandat 1636.944 kb on - strandat 1637.004 kb on - strandat 1637.004 kb on - strandat 1637.004 kb on - strandat 1637.004 kb on - strandat 1637.004 kb on - strandat 1637.005 kb on + strandat 1637.006 kb on - strandat 1637.006 kb on - strandat 1637.043 kb on + strandat 1637.091 kb on - strandat 1637.228 kb on + strand, within Xcc-8004.1704.1at 1637.250 kb on - strand, within Xcc-8004.1704.1at 1637.250 kb on - strand, within Xcc-8004.1704.1at 1637.250 kb on - strand, within Xcc-8004.1704.1at 1637.250 kb on - strand, within Xcc-8004.1704.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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1,635,348 - Xcc-8004.1701.1 0.18 +2.5
1,635,348 - Xcc-8004.1701.1 0.18 +1.4
1,635,348 - Xcc-8004.1701.1 0.18 -0.7
1,635,904 - -3.2
1,635,964 + Xcc-8004.1702.1 0.20 -0.9
1,635,965 - Xcc-8004.1702.1 0.20 -1.2
1,636,045 - Xcc-8004.1702.1 0.37 -0.8
1,636,060 + Xcc-8004.1702.1 0.40 -1.0
1,636,060 + Xcc-8004.1702.1 0.40 +0.7
1,636,060 + Xcc-8004.1702.1 0.40 -1.3
1,636,060 + Xcc-8004.1702.1 0.40 -1.7
1,636,060 + Xcc-8004.1702.1 0.40 +0.3
1,636,060 + Xcc-8004.1702.1 0.40 -0.9
1,636,061 - Xcc-8004.1702.1 0.41 +1.5
1,636,061 - Xcc-8004.1702.1 0.41 -0.4
1,636,078 + Xcc-8004.1702.1 0.44 +0.2
1,636,079 - Xcc-8004.1702.1 0.44 -1.0
1,636,079 - Xcc-8004.1702.1 0.44 -0.1
1,636,225 + Xcc-8004.1702.1 0.76 -0.4
1,636,225 + Xcc-8004.1702.1 0.76 -0.1
1,636,225 + Xcc-8004.1702.1 0.76 -1.2
1,636,225 + Xcc-8004.1702.1 0.76 -0.8
1,636,225 + Xcc-8004.1702.1 0.76 +0.2
1,636,226 - Xcc-8004.1702.1 0.76 -1.9
1,636,226 - Xcc-8004.1702.1 0.76 -1.1
1,636,226 - Xcc-8004.1702.1 0.76 -0.8
1,636,226 - Xcc-8004.1702.1 0.76 -0.6
1,636,227 + Xcc-8004.1702.1 0.76 -0.2
1,636,232 - Xcc-8004.1702.1 0.77 +0.3
1,636,410 - +2.1
1,636,903 + Xcc-8004.1703.1 0.84 -0.9
1,636,944 - +0.2
1,636,944 - +0.5
1,637,004 - +0.3
1,637,004 - -0.5
1,637,004 - +0.0
1,637,004 - -0.2
1,637,004 - -2.0
1,637,005 + -0.5
1,637,006 - +0.5
1,637,006 - -1.2
1,637,043 + +0.1
1,637,091 - -1.9
1,637,228 + Xcc-8004.1704.1 0.23 -0.6
1,637,250 - Xcc-8004.1704.1 0.27 +0.5
1,637,250 - Xcc-8004.1704.1 0.27 -0.9
1,637,250 - Xcc-8004.1704.1 0.27 -0.7
1,637,250 - Xcc-8004.1704.1 0.27 -2.0

Or see this region's nucleotide sequence