Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1241.1 and Xcc-8004.1242.1 overlap by 4 nucleotides Xcc-8004.1242.1 and Xcc-8004.1243.1 are separated by 199 nucleotides Xcc-8004.1243.1 and Xcc-8004.1244.1 are separated by 464 nucleotides
Xcc-8004.1241.1: Xcc-8004.1241.1 - Phosphoglycerate kinase (EC 2.7.2.3), at 1,171,221 to 1,172,396
Xcc-8004.1241.1
Xcc-8004.1242.1: Xcc-8004.1242.1 - Phosphoglycolate phosphatase (EC 3.1.3.18), at 1,172,393 to 1,173,040
Xcc-8004.1242.1
Xcc-8004.1243.1: Xcc-8004.1243.1 - Pyruvate kinase (EC 2.7.1.40), at 1,173,240 to 1,174,706
Xcc-8004.1243.1
Xcc-8004.1244.1: Xcc-8004.1244.1 - Fructose-bisphosphate aldolase class I (EC 4.1.2.13), at 1,175,171 to 1,176,175
Xcc-8004.1244.1
Position (kb) 1173
1174
1175 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1172.283 kb on + strand at 1172.283 kb on + strand at 1172.283 kb on + strand at 1172.283 kb on + strand at 1172.283 kb on + strand at 1172.283 kb on + strand at 1172.284 kb on - strand at 1172.284 kb on - strand at 1172.284 kb on - strand at 1172.284 kb on - strand at 1172.284 kb on - strand at 1172.284 kb on - strand at 1172.284 kb on - strand at 1172.284 kb on - strand at 1172.307 kb on + strand at 1172.307 kb on + strand at 1172.307 kb on + strand at 1172.307 kb on + strand at 1172.307 kb on + strand at 1172.307 kb on + strand at 1172.308 kb on - strand at 1172.308 kb on - strand at 1172.308 kb on - strand at 1172.308 kb on - strand at 1172.308 kb on - strand at 1172.308 kb on - strand at 1172.308 kb on - strand at 1172.308 kb on - strand at 1172.308 kb on - strand at 1172.308 kb on - strand at 1172.308 kb on - strand at 1172.586 kb on + strand, within Xcc-8004.1242.1 at 1172.586 kb on + strand, within Xcc-8004.1242.1 at 1172.586 kb on + strand, within Xcc-8004.1242.1 at 1172.586 kb on + strand, within Xcc-8004.1242.1 at 1172.586 kb on + strand, within Xcc-8004.1242.1 at 1172.619 kb on - strand, within Xcc-8004.1242.1 at 1172.709 kb on + strand, within Xcc-8004.1242.1 at 1172.709 kb on + strand, within Xcc-8004.1242.1 at 1172.709 kb on + strand, within Xcc-8004.1242.1 at 1172.733 kb on - strand, within Xcc-8004.1242.1 at 1173.039 kb on - strand at 1173.068 kb on + strand at 1173.068 kb on + strand at 1173.069 kb on - strand at 1173.069 kb on - strand at 1173.069 kb on - strand at 1173.121 kb on + strand at 1173.122 kb on - strand at 1173.122 kb on - strand at 1173.125 kb on + strand at 1173.125 kb on + strand at 1173.125 kb on + strand at 1173.125 kb on + strand at 1173.125 kb on + strand at 1173.125 kb on + strand at 1173.125 kb on + strand at 1173.125 kb on + strand at 1173.126 kb on - strand at 1173.126 kb on - strand at 1173.126 kb on - strand at 1173.126 kb on - strand at 1173.126 kb on - strand at 1173.126 kb on - strand at 1173.126 kb on - strand at 1173.126 kb on - strand at 1173.126 kb on - strand at 1173.126 kb on - strand at 1173.126 kb on - strand at 1173.126 kb on - strand at 1173.144 kb on + strand at 1173.144 kb on + strand at 1173.145 kb on - strand at 1173.145 kb on - strand at 1173.145 kb on - strand at 1173.172 kb on - strand at 1173.172 kb on - strand at 1173.172 kb on - strand at 1173.172 kb on - strand at 1173.172 kb on - strand at 1173.209 kb on + strand at 1173.210 kb on - strand at 1173.210 kb on - strand at 1173.225 kb on + strand at 1173.226 kb on - strand at 1173.226 kb on - strand at 1173.579 kb on + strand, within Xcc-8004.1243.1 at 1173.579 kb on + strand, within Xcc-8004.1243.1 at 1173.580 kb on - strand, within Xcc-8004.1243.1 at 1173.580 kb on - strand, within Xcc-8004.1243.1 at 1173.580 kb on - strand, within Xcc-8004.1243.1 at 1174.132 kb on + strand, within Xcc-8004.1243.1 at 1174.132 kb on + strand, within Xcc-8004.1243.1 at 1174.133 kb on - strand, within Xcc-8004.1243.1 at 1174.133 kb on - strand, within Xcc-8004.1243.1 at 1174.206 kb on + strand, within Xcc-8004.1243.1 at 1174.206 kb on + strand, within Xcc-8004.1243.1 at 1174.407 kb on + strand, within Xcc-8004.1243.1 at 1174.408 kb on - strand, within Xcc-8004.1243.1 at 1174.408 kb on - strand, within Xcc-8004.1243.1 at 1174.408 kb on - strand, within Xcc-8004.1243.1 at 1174.430 kb on + strand, within Xcc-8004.1243.1 at 1174.431 kb on - strand, within Xcc-8004.1243.1 at 1174.431 kb on - strand, within Xcc-8004.1243.1 at 1174.440 kb on + strand, within Xcc-8004.1243.1 at 1174.440 kb on + strand, within Xcc-8004.1243.1 at 1174.440 kb on + strand, within Xcc-8004.1243.1 at 1174.440 kb on + strand, within Xcc-8004.1243.1 at 1174.441 kb on - strand, within Xcc-8004.1243.1 at 1174.441 kb on - strand, within Xcc-8004.1243.1 at 1174.441 kb on - strand, within Xcc-8004.1243.1 at 1174.441 kb on - strand, within Xcc-8004.1243.1 at 1174.441 kb on - strand, within Xcc-8004.1243.1 at 1174.441 kb on - strand, within Xcc-8004.1243.1 at 1174.441 kb on - strand, within Xcc-8004.1243.1 at 1174.441 kb on - strand, within Xcc-8004.1243.1 at 1174.704 kb on + strand at 1174.704 kb on + strand at 1174.704 kb on + strand at 1174.704 kb on + strand at 1174.705 kb on - strand at 1174.721 kb on + strand at 1174.721 kb on + strand at 1174.721 kb on + strand at 1174.722 kb on - strand at 1174.722 kb on - strand at 1174.851 kb on + strand at 1174.851 kb on + strand at 1174.851 kb on + strand at 1174.851 kb on + strand at 1174.851 kb on + strand at 1174.851 kb on + strand at 1174.851 kb on + strand at 1174.851 kb on + strand at 1174.851 kb on + strand at 1174.851 kb on + strand at 1174.851 kb on + strand at 1174.852 kb on - strand at 1174.852 kb on - strand at 1174.852 kb on - strand at 1174.852 kb on - strand at 1174.852 kb on - strand at 1174.852 kb on - strand at 1174.852 kb on - strand at 1174.954 kb on + strand at 1174.954 kb on + strand at 1174.955 kb on - strand at 1174.957 kb on + strand at 1175.084 kb on + strand at 1175.085 kb on - strand at 1175.117 kb on + strand at 1175.117 kb on + strand at 1175.118 kb on - strand at 1175.132 kb on + strand at 1175.134 kb on + strand at 1175.134 kb on + strand at 1175.134 kb on + strand at 1175.134 kb on + strand at 1175.134 kb on + strand at 1175.168 kb on + strand at 1175.168 kb on + strand at 1175.168 kb on + strand at 1175.168 kb on + strand at 1175.168 kb on + strand at 1175.168 kb on + strand at 1175.168 kb on + strand at 1175.169 kb on - strand at 1175.169 kb on - strand at 1175.169 kb on - strand at 1175.169 kb on - strand at 1175.169 kb on - strand at 1175.169 kb on - strand at 1175.169 kb on - strand at 1175.169 kb on - strand at 1175.169 kb on - strand at 1175.354 kb on + strand, within Xcc-8004.1244.1 at 1175.354 kb on + strand, within Xcc-8004.1244.1 at 1175.354 kb on + strand, within Xcc-8004.1244.1 at 1175.355 kb on - strand, within Xcc-8004.1244.1 at 1175.355 kb on - strand, within Xcc-8004.1244.1 at 1175.355 kb on - strand, within Xcc-8004.1244.1 at 1175.355 kb on - strand, within Xcc-8004.1244.1 at 1175.355 kb on - strand, within Xcc-8004.1244.1 at 1175.426 kb on + strand, within Xcc-8004.1244.1 at 1175.426 kb on + strand, within Xcc-8004.1244.1 at 1175.426 kb on + strand, within Xcc-8004.1244.1 at 1175.427 kb on - strand, within Xcc-8004.1244.1 at 1175.427 kb on - strand, within Xcc-8004.1244.1 at 1175.427 kb on - strand, within Xcc-8004.1244.1 at 1175.427 kb on - strand, within Xcc-8004.1244.1 at 1175.427 kb on - strand, within Xcc-8004.1244.1 at 1175.427 kb on - strand, within Xcc-8004.1244.1 at 1175.427 kb on - strand, within Xcc-8004.1244.1 at 1175.549 kb on + strand, within Xcc-8004.1244.1 at 1175.549 kb on + strand, within Xcc-8004.1244.1 at 1175.549 kb on + strand, within Xcc-8004.1244.1 at 1175.549 kb on + strand, within Xcc-8004.1244.1 at 1175.549 kb on + strand, within Xcc-8004.1244.1 at 1175.549 kb on + strand, within Xcc-8004.1244.1 at 1175.550 kb on - strand, within Xcc-8004.1244.1 at 1175.550 kb on - strand, within Xcc-8004.1244.1 at 1175.550 kb on - strand, within Xcc-8004.1244.1 at 1175.550 kb on - strand, within Xcc-8004.1244.1 at 1175.552 kb on + strand, within Xcc-8004.1244.1 at 1175.552 kb on + strand, within Xcc-8004.1244.1 at 1175.552 kb on + strand, within Xcc-8004.1244.1 at 1175.552 kb on + strand, within Xcc-8004.1244.1 at 1175.552 kb on + strand, within Xcc-8004.1244.1 at 1175.552 kb on + strand, within Xcc-8004.1244.1 at 1175.553 kb on - strand, within Xcc-8004.1244.1 at 1175.553 kb on - strand, within Xcc-8004.1244.1 at 1175.553 kb on - strand, within Xcc-8004.1244.1 at 1175.553 kb on - strand, within Xcc-8004.1244.1 at 1175.553 kb on - strand, within Xcc-8004.1244.1 at 1175.553 kb on - strand, within Xcc-8004.1244.1 at 1175.553 kb on - strand, within Xcc-8004.1244.1 at 1175.553 kb on - strand, within Xcc-8004.1244.1 at 1175.553 kb on - strand, within Xcc-8004.1244.1 at 1175.658 kb on - strand, within Xcc-8004.1244.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 1,172,283 + -0.7 1,172,283 + -0.1 1,172,283 + -2.5 1,172,283 + -0.1 1,172,283 + -1.3 1,172,283 + -2.7 1,172,284 - +1.9 1,172,284 - -1.4 1,172,284 - -0.0 1,172,284 - -2.8 1,172,284 - +0.4 1,172,284 - +2.5 1,172,284 - -0.6 1,172,284 - -2.5 1,172,307 + -0.8 1,172,307 + -1.4 1,172,307 + +0.8 1,172,307 + -2.0 1,172,307 + -1.3 1,172,307 + +0.1 1,172,308 - -0.5 1,172,308 - -0.5 1,172,308 - +0.5 1,172,308 - -2.2 1,172,308 - -2.8 1,172,308 - -1.0 1,172,308 - -2.4 1,172,308 - -1.9 1,172,308 - +1.5 1,172,308 - -1.6 1,172,308 - -1.0 1,172,586 + Xcc-8004.1242.1 0.30 -1.0 1,172,586 + Xcc-8004.1242.1 0.30 +0.5 1,172,586 + Xcc-8004.1242.1 0.30 -1.6 1,172,586 + Xcc-8004.1242.1 0.30 +0.3 1,172,586 + Xcc-8004.1242.1 0.30 -2.2 1,172,619 - Xcc-8004.1242.1 0.35 +0.5 1,172,709 + Xcc-8004.1242.1 0.49 -0.1 1,172,709 + Xcc-8004.1242.1 0.49 +0.1 1,172,709 + Xcc-8004.1242.1 0.49 -2.4 1,172,733 - Xcc-8004.1242.1 0.52 -0.1 1,173,039 - +0.5 1,173,068 + -2.1 1,173,068 + +2.3 1,173,069 - +0.4 1,173,069 - -0.6 1,173,069 - +1.0 1,173,121 + -0.9 1,173,122 - -1.0 1,173,122 - -2.3 1,173,125 + +0.3 1,173,125 + +1.8 1,173,125 + -0.5 1,173,125 + -0.7 1,173,125 + +1.7 1,173,125 + +0.3 1,173,125 + -3.0 1,173,125 + +1.3 1,173,126 - -0.5 1,173,126 - -0.3 1,173,126 - +0.9 1,173,126 - +0.3 1,173,126 - +0.1 1,173,126 - -1.0 1,173,126 - -0.7 1,173,126 - -2.0 1,173,126 - -2.0 1,173,126 - -0.0 1,173,126 - -0.1 1,173,126 - +0.3 1,173,144 + -1.2 1,173,144 + -0.4 1,173,145 - +0.7 1,173,145 - +0.6 1,173,145 - -0.6 1,173,172 - +0.4 1,173,172 - -1.1 1,173,172 - -0.4 1,173,172 - +0.4 1,173,172 - -1.0 1,173,209 + -3.0 1,173,210 - -0.1 1,173,210 - -2.1 1,173,225 + -1.5 1,173,226 - -0.7 1,173,226 - -0.5 1,173,579 + Xcc-8004.1243.1 0.23 -0.4 1,173,579 + Xcc-8004.1243.1 0.23 -2.4 1,173,580 - Xcc-8004.1243.1 0.23 -0.4 1,173,580 - Xcc-8004.1243.1 0.23 -3.1 1,173,580 - Xcc-8004.1243.1 0.23 -2.5 1,174,132 + Xcc-8004.1243.1 0.61 -3.1 1,174,132 + Xcc-8004.1243.1 0.61 +0.5 1,174,133 - Xcc-8004.1243.1 0.61 +0.2 1,174,133 - Xcc-8004.1243.1 0.61 -1.6 1,174,206 + Xcc-8004.1243.1 0.66 -0.7 1,174,206 + Xcc-8004.1243.1 0.66 -0.2 1,174,407 + Xcc-8004.1243.1 0.80 -1.1 1,174,408 - Xcc-8004.1243.1 0.80 -0.7 1,174,408 - Xcc-8004.1243.1 0.80 -0.4 1,174,408 - Xcc-8004.1243.1 0.80 -0.9 1,174,430 + Xcc-8004.1243.1 0.81 +0.6 1,174,431 - Xcc-8004.1243.1 0.81 -0.6 1,174,431 - Xcc-8004.1243.1 0.81 -1.3 1,174,440 + Xcc-8004.1243.1 0.82 -0.8 1,174,440 + Xcc-8004.1243.1 0.82 -0.2 1,174,440 + Xcc-8004.1243.1 0.82 -1.0 1,174,440 + Xcc-8004.1243.1 0.82 -0.6 1,174,441 - Xcc-8004.1243.1 0.82 -2.6 1,174,441 - Xcc-8004.1243.1 0.82 -0.8 1,174,441 - Xcc-8004.1243.1 0.82 -0.9 1,174,441 - Xcc-8004.1243.1 0.82 -0.5 1,174,441 - Xcc-8004.1243.1 0.82 -1.8 1,174,441 - Xcc-8004.1243.1 0.82 -2.2 1,174,441 - Xcc-8004.1243.1 0.82 -1.6 1,174,441 - Xcc-8004.1243.1 0.82 -2.0 1,174,704 + -2.0 1,174,704 + -0.4 1,174,704 + +0.4 1,174,704 + -0.2 1,174,705 - +1.2 1,174,721 + -0.8 1,174,721 + -1.0 1,174,721 + -0.6 1,174,722 - -0.5 1,174,722 - -1.0 1,174,851 + -2.0 1,174,851 + -0.7 1,174,851 + -1.6 1,174,851 + +0.2 1,174,851 + +0.6 1,174,851 + -1.3 1,174,851 + -0.3 1,174,851 + -1.3 1,174,851 + -0.7 1,174,851 + +0.1 1,174,851 + -1.6 1,174,852 - -0.6 1,174,852 - +1.2 1,174,852 - -0.0 1,174,852 - -0.8 1,174,852 - +1.2 1,174,852 - -0.4 1,174,852 - -0.2 1,174,954 + +0.2 1,174,954 + +0.9 1,174,955 - -0.0 1,174,957 + -0.2 1,175,084 + +0.4 1,175,085 - +0.2 1,175,117 + -1.4 1,175,117 + -1.9 1,175,118 - +1.9 1,175,132 + +0.3 1,175,134 + -0.4 1,175,134 + -1.9 1,175,134 + +2.9 1,175,134 + +0.6 1,175,134 + -2.7 1,175,168 + +0.3 1,175,168 + +1.6 1,175,168 + -1.0 1,175,168 + -0.3 1,175,168 + -2.3 1,175,168 + -0.6 1,175,168 + -0.8 1,175,169 - +0.9 1,175,169 - -1.4 1,175,169 - -0.5 1,175,169 - -2.6 1,175,169 - -0.8 1,175,169 - -1.8 1,175,169 - -1.9 1,175,169 - +1.0 1,175,169 - -2.2 1,175,354 + Xcc-8004.1244.1 0.18 -1.6 1,175,354 + Xcc-8004.1244.1 0.18 -2.4 1,175,354 + Xcc-8004.1244.1 0.18 -1.0 1,175,355 - Xcc-8004.1244.1 0.18 -0.2 1,175,355 - Xcc-8004.1244.1 0.18 +1.5 1,175,355 - Xcc-8004.1244.1 0.18 -2.7 1,175,355 - Xcc-8004.1244.1 0.18 -1.8 1,175,355 - Xcc-8004.1244.1 0.18 -0.8 1,175,426 + Xcc-8004.1244.1 0.25 +1.9 1,175,426 + Xcc-8004.1244.1 0.25 -0.1 1,175,426 + Xcc-8004.1244.1 0.25 -0.7 1,175,427 - Xcc-8004.1244.1 0.25 -0.3 1,175,427 - Xcc-8004.1244.1 0.25 -1.3 1,175,427 - Xcc-8004.1244.1 0.25 -2.3 1,175,427 - Xcc-8004.1244.1 0.25 -1.3 1,175,427 - Xcc-8004.1244.1 0.25 -0.4 1,175,427 - Xcc-8004.1244.1 0.25 -1.0 1,175,427 - Xcc-8004.1244.1 0.25 +0.1 1,175,549 + Xcc-8004.1244.1 0.38 -1.0 1,175,549 + Xcc-8004.1244.1 0.38 +0.4 1,175,549 + Xcc-8004.1244.1 0.38 -0.6 1,175,549 + Xcc-8004.1244.1 0.38 -0.2 1,175,549 + Xcc-8004.1244.1 0.38 -2.0 1,175,549 + Xcc-8004.1244.1 0.38 -0.1 1,175,550 - Xcc-8004.1244.1 0.38 -1.3 1,175,550 - Xcc-8004.1244.1 0.38 +2.5 1,175,550 - Xcc-8004.1244.1 0.38 +1.3 1,175,550 - Xcc-8004.1244.1 0.38 -0.8 1,175,552 + Xcc-8004.1244.1 0.38 +0.9 1,175,552 + Xcc-8004.1244.1 0.38 -1.3 1,175,552 + Xcc-8004.1244.1 0.38 -1.4 1,175,552 + Xcc-8004.1244.1 0.38 +0.2 1,175,552 + Xcc-8004.1244.1 0.38 -1.1 1,175,552 + Xcc-8004.1244.1 0.38 -3.2 1,175,553 - Xcc-8004.1244.1 0.38 +1.4 1,175,553 - Xcc-8004.1244.1 0.38 +0.0 1,175,553 - Xcc-8004.1244.1 0.38 -1.7 1,175,553 - Xcc-8004.1244.1 0.38 +0.2 1,175,553 - Xcc-8004.1244.1 0.38 -2.9 1,175,553 - Xcc-8004.1244.1 0.38 -0.1 1,175,553 - Xcc-8004.1244.1 0.38 -0.4 1,175,553 - Xcc-8004.1244.1 0.38 +0.6 1,175,553 - Xcc-8004.1244.1 0.38 -1.7 1,175,658 - Xcc-8004.1244.1 0.48 -2.1
Or see this region's nucleotide sequence