Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS21895

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs
4,928,456	+				-1.9
4,928,456	+				-0.3
4,928,457	-				+0.5
4,928,459	+				-0.9
4,928,460	-				-0.1
4,928,460	-				-0.7
4,928,460	-				-0.1
4,928,460	-				-0.9
4,928,460	-				+0.2
4,928,517	+				+0.5
4,928,517	+				+0.1
4,928,518	-				-2.9
4,928,518	-				+1.2
4,928,518	-				-2.1
4,928,518	-				+0.5
4,928,518	-				-1.6
4,928,518	-				-0.9
4,928,518	-				-1.7
4,928,518	-				-0.9
4,928,576	+				-0.5
4,928,576	+				+1.2
4,929,027	+		PFLU_RS21890	0.64	-1.5
4,929,027	+		PFLU_RS21890	0.64	-0.5
4,929,028	-		PFLU_RS21890	0.64	-1.3
4,929,028	-		PFLU_RS21890	0.64	-2.5
4,929,028	-		PFLU_RS21890	0.64	-0.7
4,929,131	+		PFLU_RS21890	0.78	+0.7
4,929,131	+		PFLU_RS21890	0.78	+1.1
4,929,131	+		PFLU_RS21890	0.78	-1.1
4,929,131	+		PFLU_RS21890	0.78	-0.0
4,929,131	+		PFLU_RS21890	0.78	+0.1
4,929,131	+		PFLU_RS21890	0.78	-1.2
4,929,131	+		PFLU_RS21890	0.78	-0.0
4,929,131	+		PFLU_RS21890	0.78	-0.0
4,929,131	+		PFLU_RS21890	0.78	-0.8
4,929,131	+		PFLU_RS21890	0.78	-0.8
4,929,131	+		PFLU_RS21890	0.78	+1.2
4,929,131	+		PFLU_RS21890	0.78	-1.1
4,929,131	+		PFLU_RS21890	0.78	+0.6
4,929,131	+		PFLU_RS21890	0.78	-1.5
4,929,131	+		PFLU_RS21890	0.78	+1.6
4,929,131	+		PFLU_RS21890	0.78	-0.7
4,929,131	+		PFLU_RS21890	0.78	+0.1
4,929,132	-		PFLU_RS21890	0.78	-0.9
4,929,132	-		PFLU_RS21890	0.78	-0.6
4,929,132	-		PFLU_RS21890	0.78	+0.1
4,929,132	-		PFLU_RS21890	0.78	+0.3
4,929,132	-		PFLU_RS21890	0.78	-1.2
4,929,132	-		PFLU_RS21890	0.78	-0.9
4,929,132	-		PFLU_RS21890	0.78	+1.9
4,929,132	-		PFLU_RS21890	0.78	+0.7
4,929,132	-		PFLU_RS21890	0.78	-2.0
4,929,132	-		PFLU_RS21890	0.78	+0.6
4,929,132	-		PFLU_RS21890	0.78	+0.5
4,929,132	-		PFLU_RS21890	0.78	-0.3
4,929,132	-		PFLU_RS21890	0.78	-2.3
4,929,132	-		PFLU_RS21890	0.78	-0.4
4,929,132	-		PFLU_RS21890	0.78	+1.1
4,929,132	-		PFLU_RS21890	0.78	-0.9
4,929,132	-		PFLU_RS21890	0.78	-1.7
4,929,132	-		PFLU_RS21890	0.78	-0.9
4,929,132	-		PFLU_RS21890	0.78	-2.5
4,929,132	-		PFLU_RS21890	0.78	+0.0
4,929,133	+		PFLU_RS21890	0.78	+0.7
4,929,133	+		PFLU_RS21890	0.78	-0.7
4,929,133	+		PFLU_RS21890	0.78	-0.5
4,929,218	+		PFLU_RS21890	0.89	-0.6
4,929,219	-		PFLU_RS21890	0.89	-0.6
4,929,219	-		PFLU_RS21890	0.89	+0.5
4,929,219	-		PFLU_RS21890	0.89	+0.4
4,929,220	+		PFLU_RS21890	0.89	+1.4
4,929,220	+		PFLU_RS21890	0.89	-0.6
4,929,221	-		PFLU_RS21890	0.90	-0.3
4,929,221	-		PFLU_RS21890	0.90	-0.3
4,929,221	-		PFLU_RS21890	0.90	+0.3
4,929,297	-				+1.4
4,929,297	-				+2.5
4,929,297	-				+1.4
4,929,302	+				+0.8
4,929,302	+				-0.3
4,929,302	+				+0.4
4,929,302	+				-0.4
4,929,302	+				+0.7
4,929,302	+				+0.7
4,929,302	+				+1.6
4,929,303	-				-0.4
4,929,358	+				+0.8
4,929,359	-				-1.7
4,929,431	-				+1.6
4,929,462	+				-2.5
4,929,462	+				-1.6
4,929,462	+				-0.5
4,929,463	-				-1.5
4,929,463	-				-1.6
4,929,649	+		PFLU_RS21895	0.28	-1.5
4,929,649	+		PFLU_RS21895	0.28	+2.0
4,929,650	-		PFLU_RS21895	0.28	-1.2
4,929,650	-		PFLU_RS21895	0.28	-1.4
4,929,713	-		PFLU_RS21895	0.36	+1.6
4,929,748	+		PFLU_RS21895	0.40	-1.8
4,929,749	-		PFLU_RS21895	0.40	+0.1
4,929,765	+		PFLU_RS21895	0.41	-2.5
4,929,765	+		PFLU_RS21895	0.41	+1.6
4,929,765	+		PFLU_RS21895	0.41	-0.1
4,929,765	+		PFLU_RS21895	0.41	-1.0
4,929,765	+		PFLU_RS21895	0.41	-2.1
4,929,765	+		PFLU_RS21895	0.41	+0.1
4,929,766	-		PFLU_RS21895	0.42	-2.2
4,929,766	-		PFLU_RS21895	0.42	+0.9
4,929,766	-		PFLU_RS21895	0.42	-1.5
4,929,766	-		PFLU_RS21895	0.42	-0.7
4,929,766	-		PFLU_RS21895	0.42	-1.5
4,929,766	-		PFLU_RS21895	0.42	-2.5
4,929,766	-		PFLU_RS21895	0.42	+0.9
4,929,777	+		PFLU_RS21895	0.43	-0.6
4,929,778	-		PFLU_RS21895	0.43	+1.1
4,930,137	-		PFLU_RS21895	0.84	-2.2
4,930,285	+				-1.7
4,930,285	+				-2.2
4,930,285	+				+1.0
4,930,286	-				-0.3
4,930,286	-				-0.7
4,930,286	-				+0.2
4,930,286	-				-0.3
4,930,286	-				+1.2
4,930,286	-				+1.4
4,930,286	-				+0.9
4,930,292	+				+0.3
4,930,292	+				+1.0
4,930,292	+				-0.9
4,930,293	-				-0.4
4,930,293	-				+0.5
4,930,293	-				-2.9
4,930,354	+				+0.1
4,930,355	-				-1.4
4,930,355	-				+0.2
4,930,411	+				+1.0
4,930,411	+				+0.1
4,930,411	+				+1.1
4,930,412	-				-1.1
4,930,412	-				+0.9
4,930,412	-				-0.8
4,930,412	-				+0.3
4,930,412	-				+0.6
4,930,446	+		PFLU_RS21900	0.11	+0.1
4,930,447	-		PFLU_RS21900	0.11	-0.2
4,930,510	+		PFLU_RS21900	0.34	+1.3
4,930,510	+		PFLU_RS21900	0.34	+0.1
4,930,510	+		PFLU_RS21900	0.34	-0.4
4,930,511	-		PFLU_RS21900	0.34	-0.4
4,930,511	-		PFLU_RS21900	0.34	+0.8
4,930,511	-		PFLU_RS21900	0.34	-2.9
4,930,694	+				+0.2
4,930,694	+				+0.3
4,930,695	-				-0.5
4,930,738	+				-2.4
4,930,738	+				+0.6
4,930,745	+				-1.5
4,930,745	+				-1.9
4,930,745	+				-1.4
4,930,745	+				+0.1
4,930,746	-				-0.4
4,930,746	-				-1.6
4,930,838	+		PFLU_RS21905	0.35	+1.6
4,930,838	+		PFLU_RS21905	0.35	+1.4
4,930,839	-		PFLU_RS21905	0.35	+1.2
4,930,990	+		PFLU_RS21905	0.88	-2.9
4,930,990	+		PFLU_RS21905	0.88	+0.2
4,930,990	+		PFLU_RS21905	0.88	-0.4
4,930,990	+		PFLU_RS21905	0.88	+0.1
4,930,990	+		PFLU_RS21905	0.88	+0.6
4,930,991	-		PFLU_RS21905	0.88	+0.3
4,930,991	-		PFLU_RS21905	0.88	+0.3
4,930,991	-		PFLU_RS21905	0.88	-1.5
4,930,991	-		PFLU_RS21905	0.88	+1.0
4,930,991	-		PFLU_RS21905	0.88	+0.2
4,930,991	-		PFLU_RS21905	0.88	-0.3
4,930,991	-		PFLU_RS21905	0.88	-2.5
4,931,024	+				+0.4
4,931,024	+				-0.9
4,931,024	+				-0.4
4,931,024	+				-0.8
4,931,024	+				-1.8
4,931,024	+				+0.4
4,931,024	+				-0.1
4,931,024	+				-2.1
4,931,024	+				+0.6
4,931,024	+				-1.3
4,931,025	-				+0.6
4,931,025	-				-0.2
4,931,025	-				+1.5
4,931,070	+				-1.8
4,931,070	+				+0.7
4,931,070	+				-2.8
4,931,070	+				+0.6
4,931,070	+				-0.9
4,931,070	+				-1.8
4,931,070	+				-1.5
4,931,070	+				+1.6
4,931,071	-				-0.2
4,931,071	-				-2.5
4,931,071	-				-0.3
4,931,071	-				+1.4
4,931,071	-				-0.6
4,931,071	-				+0.6
4,931,072	+				+0.2
4,931,072	+				-0.3
4,931,072	+				+0.2
4,931,072	+				-0.9
4,931,072	+				+0.4
4,931,072	+				+0.7
4,931,072	+				-0.7
4,931,072	+				+1.1
4,931,073	-				+0.7
4,931,073	-				-0.6
4,931,073	-				+0.1
4,931,073	-				+0.5
4,931,073	-				-1.3
4,931,073	-				-2.9
4,931,073	-				-1.2
4,931,073	-				+0.5
4,931,073	-				-0.4
4,931,075	+				+0.6
4,931,076	-				+1.1
4,931,076	-				+0.1
4,931,076	-				-1.9
4,931,143	+				-0.1
4,931,143	+				-0.6
4,931,143	+				-0.5
4,931,144	-				+0.3
4,931,144	-				+0.1