Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c09700 and PGA1_c09710 are separated by 571 nucleotides PGA1_c09710 and PGA1_c09720 are separated by 28 nucleotides
PGA1_c09700: PGA1_c09700 - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC, at 995,838 to 996,773
_c09700
PGA1_c09710: PGA1_c09710 - putative outer membrane assembly lipoprotein, at 997,345 to 998,193
_c09710
PGA1_c09720: PGA1_c09720 - DNA repair protein RecN, at 998,222 to 999,868
_c09720
Position (kb) 997
998
999 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 996.721 kb on + strand at 996.734 kb on - strand at 996.909 kb on + strand at 996.917 kb on - strand at 996.962 kb on - strand at 996.964 kb on + strand at 997.106 kb on + strand at 997.134 kb on - strand at 997.157 kb on - strand at 997.157 kb on - strand at 997.171 kb on + strand at 997.180 kb on - strand at 997.190 kb on + strand at 997.190 kb on + strand at 997.198 kb on - strand at 997.198 kb on - strand at 997.198 kb on - strand at 997.198 kb on - strand at 997.198 kb on - strand at 997.198 kb on - strand at 997.198 kb on - strand at 997.198 kb on - strand at 997.198 kb on - strand at 997.198 kb on - strand at 997.198 kb on - strand at 997.208 kb on + strand at 997.208 kb on + strand at 997.208 kb on + strand at 997.208 kb on - strand at 997.216 kb on - strand at 998.093 kb on + strand, within PGA1_c09710 at 998.093 kb on + strand, within PGA1_c09710 at 998.101 kb on - strand, within PGA1_c09710 at 998.101 kb on - strand, within PGA1_c09710 at 998.187 kb on - strand at 998.232 kb on + strand at 998.257 kb on - strand at 998.296 kb on - strand at 998.394 kb on + strand, within PGA1_c09720 at 998.456 kb on + strand, within PGA1_c09720 at 998.556 kb on + strand, within PGA1_c09720 at 998.643 kb on + strand, within PGA1_c09720 at 998.677 kb on + strand, within PGA1_c09720 at 998.897 kb on + strand, within PGA1_c09720 at 998.942 kb on + strand, within PGA1_c09720 at 998.942 kb on + strand, within PGA1_c09720 at 998.950 kb on - strand, within PGA1_c09720 at 998.964 kb on + strand, within PGA1_c09720 at 999.030 kb on - strand, within PGA1_c09720 at 999.096 kb on - strand, within PGA1_c09720
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 996,721 + +0.5 996,734 - +0.3 996,909 + -1.0 996,917 - -0.6 996,962 - +0.1 996,964 + +0.3 997,106 + +0.3 997,134 - +0.0 997,157 - -0.0 997,157 - +0.2 997,171 + +0.6 997,180 - -0.0 997,190 + -1.1 997,190 + -0.3 997,198 - -0.6 997,198 - -0.2 997,198 - -0.2 997,198 - +0.6 997,198 - +0.7 997,198 - -1.0 997,198 - +0.5 997,198 - +0.6 997,198 - +0.7 997,198 - -0.6 997,198 - -0.0 997,208 + -0.8 997,208 + -0.8 997,208 + -0.1 997,208 - +0.9 997,216 - +0.2 998,093 + PGA1_c09710 0.88 -3.2 998,093 + PGA1_c09710 0.88 -1.9 998,101 - PGA1_c09710 0.89 -1.2 998,101 - PGA1_c09710 0.89 -3.7 998,187 - +0.3 998,232 + -0.3 998,257 - -0.5 998,296 - -0.4 998,394 + PGA1_c09720 0.10 +0.1 998,456 + PGA1_c09720 0.14 +1.7 998,556 + PGA1_c09720 0.20 -0.9 998,643 + PGA1_c09720 0.26 +0.4 998,677 + PGA1_c09720 0.28 -0.5 998,897 + PGA1_c09720 0.41 -0.5 998,942 + PGA1_c09720 0.44 +0.4 998,942 + PGA1_c09720 0.44 -0.3 998,950 - PGA1_c09720 0.44 -0.3 998,964 + PGA1_c09720 0.45 -0.7 999,030 - PGA1_c09720 0.49 -0.2 999,096 - PGA1_c09720 0.53 +0.0
Or see this region's nucleotide sequence