Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07180

Experiment: m.b. Fusidic 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07160 and PGA1_c07170 are separated by 23 nucleotidesPGA1_c07170 and PGA1_c07180 are separated by 144 nucleotidesPGA1_c07180 and PGA1_c07190 are separated by 226 nucleotides PGA1_c07160: PGA1_c07160 - FOG: WD40 repeat, at 735,792 to 737,102 _c07160 PGA1_c07170: PGA1_c07170 - acetate operon repressor-like protein, at 737,126 to 737,938 _c07170 PGA1_c07180: PGA1_c07180 - 2-hydroxy-3-oxopropionate reductase-like protein, at 738,083 to 739,048 _c07180 PGA1_c07190: PGA1_c07190 - transcriptional regulator, IclR family, at 739,275 to 740,348 _c07190 Position (kb) 738 739 740Strain fitness (log2 ratio) -2 -1 0 1at 737.097 kb on + strandat 737.142 kb on + strandat 737.142 kb on + strandat 737.150 kb on - strandat 737.282 kb on - strand, within PGA1_c07170at 737.283 kb on - strand, within PGA1_c07170at 737.327 kb on - strand, within PGA1_c07170at 737.385 kb on - strand, within PGA1_c07170at 737.398 kb on - strand, within PGA1_c07170at 737.404 kb on - strand, within PGA1_c07170at 737.430 kb on + strand, within PGA1_c07170at 737.445 kb on + strand, within PGA1_c07170at 737.445 kb on + strand, within PGA1_c07170at 737.508 kb on - strand, within PGA1_c07170at 737.543 kb on + strand, within PGA1_c07170at 737.543 kb on + strand, within PGA1_c07170at 737.551 kb on - strand, within PGA1_c07170at 737.551 kb on - strand, within PGA1_c07170at 737.551 kb on - strand, within PGA1_c07170at 737.560 kb on + strand, within PGA1_c07170at 737.560 kb on + strand, within PGA1_c07170at 737.560 kb on + strand, within PGA1_c07170at 737.560 kb on + strand, within PGA1_c07170at 737.568 kb on - strand, within PGA1_c07170at 737.568 kb on - strand, within PGA1_c07170at 737.568 kb on - strand, within PGA1_c07170at 737.574 kb on - strand, within PGA1_c07170at 737.574 kb on - strand, within PGA1_c07170at 737.576 kb on + strand, within PGA1_c07170at 737.576 kb on + strand, within PGA1_c07170at 737.584 kb on - strand, within PGA1_c07170at 737.598 kb on + strand, within PGA1_c07170at 737.598 kb on + strand, within PGA1_c07170at 737.668 kb on + strand, within PGA1_c07170at 737.671 kb on - strand, within PGA1_c07170at 737.701 kb on - strand, within PGA1_c07170at 737.701 kb on - strand, within PGA1_c07170at 737.787 kb on + strand, within PGA1_c07170at 737.810 kb on + strand, within PGA1_c07170at 737.815 kb on + strand, within PGA1_c07170at 737.823 kb on - strand, within PGA1_c07170at 737.848 kb on + strand, within PGA1_c07170at 737.866 kb on - strandat 737.898 kb on - strandat 738.004 kb on - strandat 738.007 kb on + strandat 738.012 kb on + strandat 738.012 kb on + strandat 738.012 kb on + strandat 738.012 kb on + strandat 738.012 kb on + strandat 738.020 kb on - strandat 738.020 kb on - strandat 738.041 kb on + strandat 738.041 kb on + strandat 738.055 kb on + strandat 738.063 kb on - strandat 738.088 kb on + strandat 738.136 kb on + strandat 738.145 kb on + strandat 738.185 kb on + strand, within PGA1_c07180at 738.240 kb on - strand, within PGA1_c07180at 738.240 kb on - strand, within PGA1_c07180at 738.240 kb on - strand, within PGA1_c07180at 738.324 kb on + strand, within PGA1_c07180at 738.324 kb on + strand, within PGA1_c07180at 738.324 kb on + strand, within PGA1_c07180at 738.324 kb on + strand, within PGA1_c07180at 738.332 kb on - strand, within PGA1_c07180at 738.332 kb on - strand, within PGA1_c07180at 738.332 kb on - strand, within PGA1_c07180at 738.332 kb on - strand, within PGA1_c07180at 738.332 kb on - strand, within PGA1_c07180at 738.332 kb on - strand, within PGA1_c07180at 738.332 kb on - strand, within PGA1_c07180at 738.332 kb on - strand, within PGA1_c07180at 738.334 kb on + strand, within PGA1_c07180at 738.336 kb on + strand, within PGA1_c07180at 738.355 kb on + strand, within PGA1_c07180at 738.363 kb on + strand, within PGA1_c07180at 738.437 kb on + strand, within PGA1_c07180at 738.466 kb on + strand, within PGA1_c07180at 738.469 kb on - strand, within PGA1_c07180at 738.491 kb on + strand, within PGA1_c07180at 738.491 kb on + strand, within PGA1_c07180at 738.509 kb on + strand, within PGA1_c07180at 738.517 kb on - strand, within PGA1_c07180at 738.517 kb on - strand, within PGA1_c07180at 738.559 kb on + strand, within PGA1_c07180at 738.567 kb on - strand, within PGA1_c07180at 738.594 kb on - strand, within PGA1_c07180at 738.632 kb on + strand, within PGA1_c07180at 738.633 kb on - strand, within PGA1_c07180at 738.633 kb on - strand, within PGA1_c07180at 738.656 kb on + strand, within PGA1_c07180at 738.690 kb on + strand, within PGA1_c07180at 738.707 kb on + strand, within PGA1_c07180at 738.715 kb on - strand, within PGA1_c07180at 738.750 kb on + strand, within PGA1_c07180at 738.766 kb on + strand, within PGA1_c07180at 738.786 kb on + strand, within PGA1_c07180at 738.794 kb on - strand, within PGA1_c07180at 738.856 kb on + strand, within PGA1_c07180at 738.861 kb on + strand, within PGA1_c07180at 738.861 kb on + strand, within PGA1_c07180at 738.863 kb on + strand, within PGA1_c07180at 738.928 kb on + strand, within PGA1_c07180at 738.976 kb on - strandat 738.981 kb on - strandat 738.994 kb on + strandat 738.994 kb on + strandat 739.002 kb on - strandat 739.025 kb on - strandat 739.151 kb on + strandat 739.156 kb on + strandat 739.159 kb on - strandat 739.159 kb on - strandat 739.159 kb on - strandat 739.159 kb on - strandat 739.159 kb on - strandat 739.161 kb on + strandat 739.161 kb on + strandat 739.188 kb on + strandat 739.199 kb on + strandat 739.209 kb on + strandat 739.248 kb on + strandat 739.261 kb on - strandat 739.290 kb on + strandat 739.290 kb on + strandat 739.290 kb on + strandat 739.290 kb on + strandat 739.290 kb on + strandat 739.296 kb on + strandat 739.298 kb on - strandat 739.298 kb on - strandat 739.298 kb on - strandat 739.298 kb on - strandat 739.304 kb on - strandat 739.339 kb on + strandat 739.357 kb on + strandat 739.365 kb on - strandat 739.365 kb on - strandat 739.376 kb on + strandat 739.378 kb on + strandat 739.389 kb on + strand, within PGA1_c07190at 739.444 kb on + strand, within PGA1_c07190at 739.452 kb on - strand, within PGA1_c07190at 739.466 kb on - strand, within PGA1_c07190at 739.487 kb on - strand, within PGA1_c07190at 739.493 kb on + strand, within PGA1_c07190at 739.501 kb on + strand, within PGA1_c07190at 739.501 kb on + strand, within PGA1_c07190at 739.501 kb on + strand, within PGA1_c07190at 739.501 kb on + strand, within PGA1_c07190at 739.501 kb on - strand, within PGA1_c07190at 739.509 kb on - strand, within PGA1_c07190at 739.509 kb on - strand, within PGA1_c07190at 739.509 kb on - strand, within PGA1_c07190at 739.509 kb on - strand, within PGA1_c07190at 739.511 kb on - strand, within PGA1_c07190at 739.526 kb on + strand, within PGA1_c07190at 739.569 kb on + strand, within PGA1_c07190at 739.577 kb on - strand, within PGA1_c07190at 739.590 kb on - strand, within PGA1_c07190at 739.605 kb on + strand, within PGA1_c07190at 739.613 kb on - strand, within PGA1_c07190at 739.613 kb on - strand, within PGA1_c07190at 739.695 kb on + strand, within PGA1_c07190at 739.695 kb on + strand, within PGA1_c07190at 739.695 kb on + strand, within PGA1_c07190at 739.695 kb on + strand, within PGA1_c07190at 739.695 kb on + strand, within PGA1_c07190at 739.695 kb on + strand, within PGA1_c07190at 739.695 kb on + strand, within PGA1_c07190at 739.703 kb on - strand, within PGA1_c07190at 739.752 kb on + strand, within PGA1_c07190at 739.912 kb on + strand, within PGA1_c07190at 739.941 kb on + strand, within PGA1_c07190at 739.943 kb on + strand, within PGA1_c07190at 739.945 kb on - strand, within PGA1_c07190at 739.957 kb on - strand, within PGA1_c07190at 739.985 kb on + strand, within PGA1_c07190at 739.985 kb on + strand, within PGA1_c07190at 739.985 kb on + strand, within PGA1_c07190at 739.993 kb on - strand, within PGA1_c07190at 740.045 kb on - strand, within PGA1_c07190at 740.048 kb on + strand, within PGA1_c07190

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
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737,097 + -0.2
737,142 + +0.5
737,142 + +0.1
737,150 - +0.1
737,282 - PGA1_c07170 0.19 +0.0
737,283 - PGA1_c07170 0.19 -0.7
737,327 - PGA1_c07170 0.25 +0.1
737,385 - PGA1_c07170 0.32 +0.5
737,398 - PGA1_c07170 0.33 +0.4
737,404 - PGA1_c07170 0.34 -0.7
737,430 + PGA1_c07170 0.37 -0.8
737,445 + PGA1_c07170 0.39 +1.1
737,445 + PGA1_c07170 0.39 +0.0
737,508 - PGA1_c07170 0.47 -0.1
737,543 + PGA1_c07170 0.51 +0.4
737,543 + PGA1_c07170 0.51 -0.1
737,551 - PGA1_c07170 0.52 -0.9
737,551 - PGA1_c07170 0.52 +0.1
737,551 - PGA1_c07170 0.52 -1.1
737,560 + PGA1_c07170 0.53 +0.6
737,560 + PGA1_c07170 0.53 -1.4
737,560 + PGA1_c07170 0.53 +0.1
737,560 + PGA1_c07170 0.53 -0.1
737,568 - PGA1_c07170 0.54 +0.6
737,568 - PGA1_c07170 0.54 +0.4
737,568 - PGA1_c07170 0.54 -0.3
737,574 - PGA1_c07170 0.55 -0.3
737,574 - PGA1_c07170 0.55 +0.1
737,576 + PGA1_c07170 0.55 +0.4
737,576 + PGA1_c07170 0.55 +0.0
737,584 - PGA1_c07170 0.56 +0.2
737,598 + PGA1_c07170 0.58 -0.2
737,598 + PGA1_c07170 0.58 -1.9
737,668 + PGA1_c07170 0.67 -0.0
737,671 - PGA1_c07170 0.67 -0.5
737,701 - PGA1_c07170 0.71 -0.3
737,701 - PGA1_c07170 0.71 -0.3
737,787 + PGA1_c07170 0.81 +0.1
737,810 + PGA1_c07170 0.84 +0.3
737,815 + PGA1_c07170 0.85 -1.1
737,823 - PGA1_c07170 0.86 -0.5
737,848 + PGA1_c07170 0.89 +0.5
737,866 - +0.7
737,898 - -0.1
738,004 - -0.3
738,007 + -0.5
738,012 + +0.7
738,012 + -1.1
738,012 + +0.6
738,012 + +0.1
738,012 + +0.4
738,020 - -0.3
738,020 - +0.3
738,041 + +0.7
738,041 + +0.3
738,055 + +0.3
738,063 - -0.2
738,088 + +0.3
738,136 + -0.3
738,145 + -0.5
738,185 + PGA1_c07180 0.11 -1.3
738,240 - PGA1_c07180 0.16 -0.1
738,240 - PGA1_c07180 0.16 +0.8
738,240 - PGA1_c07180 0.16 +0.5
738,324 + PGA1_c07180 0.25 -0.1
738,324 + PGA1_c07180 0.25 -0.6
738,324 + PGA1_c07180 0.25 -1.2
738,324 + PGA1_c07180 0.25 -0.4
738,332 - PGA1_c07180 0.26 +0.6
738,332 - PGA1_c07180 0.26 -0.2
738,332 - PGA1_c07180 0.26 +1.1
738,332 - PGA1_c07180 0.26 +0.1
738,332 - PGA1_c07180 0.26 -0.3
738,332 - PGA1_c07180 0.26 +1.1
738,332 - PGA1_c07180 0.26 +0.4
738,332 - PGA1_c07180 0.26 +0.3
738,334 + PGA1_c07180 0.26 +0.3
738,336 + PGA1_c07180 0.26 +0.3
738,355 + PGA1_c07180 0.28 -0.6
738,363 + PGA1_c07180 0.29 +0.6
738,437 + PGA1_c07180 0.37 +0.1
738,466 + PGA1_c07180 0.40 +0.2
738,469 - PGA1_c07180 0.40 +0.3
738,491 + PGA1_c07180 0.42 +0.2
738,491 + PGA1_c07180 0.42 +0.2
738,509 + PGA1_c07180 0.44 +0.7
738,517 - PGA1_c07180 0.45 -0.4
738,517 - PGA1_c07180 0.45 -0.1
738,559 + PGA1_c07180 0.49 -0.1
738,567 - PGA1_c07180 0.50 +0.7
738,594 - PGA1_c07180 0.53 +0.1
738,632 + PGA1_c07180 0.57 +0.3
738,633 - PGA1_c07180 0.57 +0.2
738,633 - PGA1_c07180 0.57 +1.0
738,656 + PGA1_c07180 0.59 -0.8
738,690 + PGA1_c07180 0.63 +0.3
738,707 + PGA1_c07180 0.65 -0.2
738,715 - PGA1_c07180 0.65 -0.5
738,750 + PGA1_c07180 0.69 -1.4
738,766 + PGA1_c07180 0.71 +0.2
738,786 + PGA1_c07180 0.73 -0.6
738,794 - PGA1_c07180 0.74 +0.5
738,856 + PGA1_c07180 0.80 -0.8
738,861 + PGA1_c07180 0.81 +0.6
738,861 + PGA1_c07180 0.81 -0.3
738,863 + PGA1_c07180 0.81 +0.4
738,928 + PGA1_c07180 0.87 +0.3
738,976 - -1.4
738,981 - -0.3
738,994 + +0.0
738,994 + -0.2
739,002 - +0.3
739,025 - -0.3
739,151 + -0.3
739,156 + -0.2
739,159 - +0.1
739,159 - -0.0
739,159 - -0.5
739,159 - -1.0
739,159 - -1.0
739,161 + +0.3
739,161 + +1.4
739,188 + -0.1
739,199 + +0.7
739,209 + -0.2
739,248 + +0.2
739,261 - +0.1
739,290 + +0.1
739,290 + -0.0
739,290 + -0.3
739,290 + -0.6
739,290 + -0.1
739,296 + +0.5
739,298 - +1.3
739,298 - +0.2
739,298 - -0.2
739,298 - +0.8
739,304 - -1.7
739,339 + +0.8
739,357 + -0.9
739,365 - -0.1
739,365 - +0.8
739,376 + -0.7
739,378 + +0.3
739,389 + PGA1_c07190 0.11 +0.1
739,444 + PGA1_c07190 0.16 +0.5
739,452 - PGA1_c07190 0.16 +0.6
739,466 - PGA1_c07190 0.18 -0.4
739,487 - PGA1_c07190 0.20 +0.5
739,493 + PGA1_c07190 0.20 -0.2
739,501 + PGA1_c07190 0.21 -0.5
739,501 + PGA1_c07190 0.21 -0.1
739,501 + PGA1_c07190 0.21 +0.4
739,501 + PGA1_c07190 0.21 +0.4
739,501 - PGA1_c07190 0.21 -0.0
739,509 - PGA1_c07190 0.22 -0.3
739,509 - PGA1_c07190 0.22 -0.1
739,509 - PGA1_c07190 0.22 +0.7
739,509 - PGA1_c07190 0.22 -1.1
739,511 - PGA1_c07190 0.22 -0.4
739,526 + PGA1_c07190 0.23 +1.2
739,569 + PGA1_c07190 0.27 -0.4
739,577 - PGA1_c07190 0.28 +0.6
739,590 - PGA1_c07190 0.29 +0.1
739,605 + PGA1_c07190 0.31 +0.6
739,613 - PGA1_c07190 0.31 +0.5
739,613 - PGA1_c07190 0.31 -0.6
739,695 + PGA1_c07190 0.39 -0.6
739,695 + PGA1_c07190 0.39 +0.1
739,695 + PGA1_c07190 0.39 +0.3
739,695 + PGA1_c07190 0.39 +1.4
739,695 + PGA1_c07190 0.39 +1.0
739,695 + PGA1_c07190 0.39 +0.5
739,695 + PGA1_c07190 0.39 -0.8
739,703 - PGA1_c07190 0.40 -1.3
739,752 + PGA1_c07190 0.44 +0.4
739,912 + PGA1_c07190 0.59 +0.6
739,941 + PGA1_c07190 0.62 -0.1
739,943 + PGA1_c07190 0.62 +0.2
739,945 - PGA1_c07190 0.62 +1.4
739,957 - PGA1_c07190 0.64 -0.1
739,985 + PGA1_c07190 0.66 +0.3
739,985 + PGA1_c07190 0.66 -0.6
739,985 + PGA1_c07190 0.66 +0.3
739,993 - PGA1_c07190 0.67 +0.9
740,045 - PGA1_c07190 0.72 -0.9
740,048 + PGA1_c07190 0.72 -0.4

Or see this region's nucleotide sequence