Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05630 and PGA1_c05640 are separated by 37 nucleotides PGA1_c05640 and PGA1_c05650 are separated by 155 nucleotides PGA1_c05650 and PGA1_c05660 are separated by 145 nucleotides
PGA1_c05630: PGA1_c05630 - NADPH-dependent 7-cyano-7-deazaguanine reductase QueF, at 576,069 to 576,533
_c05630
PGA1_c05640: PGA1_c05640 - hypothetical protein, at 576,571 to 577,242
_c05640
PGA1_c05650: PGA1_c05650 - tRNA pseudouridine synthase A, at 577,398 to 578,171
_c05650
PGA1_c05660: PGA1_c05660 - Predicted ATPase, at 578,317 to 579,732
_c05660
Position (kb) 577
578
579 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 576.466 kb on + strand, within PGA1_c05630 at 576.474 kb on - strand, within PGA1_c05630 at 576.476 kb on + strand, within PGA1_c05630 at 576.484 kb on - strand, within PGA1_c05630 at 576.484 kb on - strand, within PGA1_c05630 at 576.506 kb on - strand at 576.506 kb on - strand at 576.512 kb on + strand at 576.538 kb on + strand at 576.676 kb on + strand, within PGA1_c05640 at 576.714 kb on + strand, within PGA1_c05640 at 576.748 kb on + strand, within PGA1_c05640 at 576.756 kb on - strand, within PGA1_c05640 at 576.756 kb on - strand, within PGA1_c05640 at 576.865 kb on + strand, within PGA1_c05640 at 576.865 kb on + strand, within PGA1_c05640 at 576.873 kb on - strand, within PGA1_c05640 at 576.873 kb on - strand, within PGA1_c05640 at 576.873 kb on - strand, within PGA1_c05640 at 576.873 kb on - strand, within PGA1_c05640 at 577.048 kb on - strand, within PGA1_c05640 at 577.121 kb on - strand, within PGA1_c05640 at 577.121 kb on - strand, within PGA1_c05640 at 577.349 kb on + strand at 577.357 kb on - strand at 577.357 kb on - strand at 577.357 kb on - strand at 577.359 kb on + strand at 577.367 kb on - strand at 577.374 kb on + strand at 577.467 kb on - strand at 577.544 kb on + strand, within PGA1_c05650 at 577.571 kb on - strand, within PGA1_c05650 at 577.637 kb on - strand, within PGA1_c05650 at 578.124 kb on + strand at 578.251 kb on + strand at 578.251 kb on + strand at 578.251 kb on + strand at 578.251 kb on + strand at 578.259 kb on - strand at 578.259 kb on - strand at 578.259 kb on - strand at 578.259 kb on - strand at 578.259 kb on - strand at 578.259 kb on - strand at 578.291 kb on - strand at 578.344 kb on + strand at 578.352 kb on - strand at 578.354 kb on + strand at 578.354 kb on + strand at 578.354 kb on + strand at 578.354 kb on + strand at 578.430 kb on - strand at 578.430 kb on - strand at 578.430 kb on - strand at 578.456 kb on + strand at 578.456 kb on + strand at 578.489 kb on + strand, within PGA1_c05660 at 578.647 kb on + strand, within PGA1_c05660 at 578.667 kb on + strand, within PGA1_c05660 at 578.668 kb on - strand, within PGA1_c05660 at 578.782 kb on + strand, within PGA1_c05660 at 578.947 kb on + strand, within PGA1_c05660 at 578.952 kb on + strand, within PGA1_c05660 at 578.952 kb on + strand, within PGA1_c05660 at 579.010 kb on - strand, within PGA1_c05660 at 579.014 kb on + strand, within PGA1_c05660 at 579.159 kb on + strand, within PGA1_c05660
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 576,466 + PGA1_c05630 0.85 +0.8 576,474 - PGA1_c05630 0.87 -0.2 576,476 + PGA1_c05630 0.88 -0.1 576,484 - PGA1_c05630 0.89 +0.3 576,484 - PGA1_c05630 0.89 +0.5 576,506 - -0.3 576,506 - -0.0 576,512 + -1.1 576,538 + -0.1 576,676 + PGA1_c05640 0.16 -0.1 576,714 + PGA1_c05640 0.21 -3.3 576,748 + PGA1_c05640 0.26 -0.6 576,756 - PGA1_c05640 0.28 -0.3 576,756 - PGA1_c05640 0.28 -0.3 576,865 + PGA1_c05640 0.44 +0.2 576,865 + PGA1_c05640 0.44 +0.7 576,873 - PGA1_c05640 0.45 -0.4 576,873 - PGA1_c05640 0.45 +0.1 576,873 - PGA1_c05640 0.45 -0.3 576,873 - PGA1_c05640 0.45 +0.6 577,048 - PGA1_c05640 0.71 +0.0 577,121 - PGA1_c05640 0.82 -0.8 577,121 - PGA1_c05640 0.82 -0.6 577,349 + -0.2 577,357 - -0.4 577,357 - -2.7 577,357 - +0.0 577,359 + +0.2 577,367 - +0.2 577,374 + -1.7 577,467 - +0.1 577,544 + PGA1_c05650 0.19 +0.8 577,571 - PGA1_c05650 0.22 +1.0 577,637 - PGA1_c05650 0.31 -0.3 578,124 + +0.7 578,251 + +0.9 578,251 + +0.4 578,251 + +0.0 578,251 + -0.5 578,259 - +0.6 578,259 - +0.9 578,259 - +0.1 578,259 - +0.6 578,259 - -0.1 578,259 - -0.8 578,291 - +0.5 578,344 + +0.3 578,352 - -2.0 578,354 + +0.1 578,354 + -0.0 578,354 + +0.8 578,354 + +0.7 578,430 - +0.4 578,430 - -1.2 578,430 - -0.1 578,456 + -0.0 578,456 + -2.9 578,489 + PGA1_c05660 0.12 -0.4 578,647 + PGA1_c05660 0.23 +0.9 578,667 + PGA1_c05660 0.25 +0.7 578,668 - PGA1_c05660 0.25 -1.9 578,782 + PGA1_c05660 0.33 +0.2 578,947 + PGA1_c05660 0.44 -0.4 578,952 + PGA1_c05660 0.45 +1.0 578,952 + PGA1_c05660 0.45 +0.5 579,010 - PGA1_c05660 0.49 -0.2 579,014 + PGA1_c05660 0.49 +0.1 579,159 + PGA1_c05660 0.59 +0.3
Or see this region's nucleotide sequence