Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c05170

Experiment: m.b. Fusidic 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c05160 and PGA1_c05170 overlap by 11 nucleotidesPGA1_c05170 and PGA1_c05180 are separated by 156 nucleotidesPGA1_c05180 and PGA1_c05190 overlap by 1 nucleotides PGA1_c05160: PGA1_c05160 - peptidase M56-like protein, at 510,787 to 511,938 _c05160 PGA1_c05170: PGA1_c05170 - penicillinase repressor blaI/mecI-like protein, at 511,928 to 512,323 _c05170 PGA1_c05180: PGA1_c05180 - Predicted small integral membrane protein, at 512,480 to 512,758 _c05180 PGA1_c05190: PGA1_c05190 - ABC transporter, inner membrane component, at 512,758 to 513,555 _c05190 Position (kb) 511 512 513Strain fitness (log2 ratio) -2 -1 0 1 2at 510.957 kb on - strand, within PGA1_c05160at 510.967 kb on - strand, within PGA1_c05160at 510.992 kb on - strand, within PGA1_c05160at 511.030 kb on - strand, within PGA1_c05160at 511.193 kb on - strand, within PGA1_c05160at 511.193 kb on - strand, within PGA1_c05160at 511.381 kb on - strand, within PGA1_c05160at 511.416 kb on - strand, within PGA1_c05160at 511.479 kb on - strand, within PGA1_c05160at 511.479 kb on - strand, within PGA1_c05160at 511.510 kb on - strand, within PGA1_c05160at 511.567 kb on - strand, within PGA1_c05160at 511.603 kb on - strand, within PGA1_c05160at 511.638 kb on + strand, within PGA1_c05160at 511.638 kb on + strand, within PGA1_c05160at 511.638 kb on + strand, within PGA1_c05160at 511.646 kb on - strand, within PGA1_c05160at 511.646 kb on - strand, within PGA1_c05160at 511.664 kb on + strand, within PGA1_c05160at 511.725 kb on - strand, within PGA1_c05160at 511.725 kb on - strand, within PGA1_c05160at 511.772 kb on - strand, within PGA1_c05160at 511.822 kb on - strand, within PGA1_c05160at 511.897 kb on + strandat 511.913 kb on - strandat 512.040 kb on + strand, within PGA1_c05170at 512.040 kb on + strand, within PGA1_c05170at 512.042 kb on + strand, within PGA1_c05170at 512.071 kb on - strand, within PGA1_c05170at 512.099 kb on - strand, within PGA1_c05170at 512.104 kb on - strand, within PGA1_c05170at 512.104 kb on - strand, within PGA1_c05170at 512.280 kb on + strand, within PGA1_c05170at 512.292 kb on + strandat 512.306 kb on + strandat 512.332 kb on + strandat 512.340 kb on - strandat 512.354 kb on - strandat 512.354 kb on - strandat 512.355 kb on - strandat 512.355 kb on - strandat 512.357 kb on + strandat 512.357 kb on + strandat 512.357 kb on + strandat 512.357 kb on + strandat 512.357 kb on + strandat 512.357 kb on + strandat 512.357 kb on + strandat 512.357 kb on + strandat 512.365 kb on - strandat 512.365 kb on - strandat 512.365 kb on - strandat 512.367 kb on - strandat 512.400 kb on + strandat 512.400 kb on + strandat 512.408 kb on - strandat 512.420 kb on + strandat 512.430 kb on + strandat 512.430 kb on + strandat 512.443 kb on - strandat 512.457 kb on - strandat 512.467 kb on + strandat 512.554 kb on + strand, within PGA1_c05180at 512.562 kb on - strand, within PGA1_c05180at 512.562 kb on - strand, within PGA1_c05180at 512.562 kb on - strand, within PGA1_c05180at 512.591 kb on - strand, within PGA1_c05180at 512.648 kb on - strand, within PGA1_c05180at 512.725 kb on - strand, within PGA1_c05180at 512.735 kb on + strandat 512.735 kb on + strandat 512.735 kb on + strandat 512.735 kb on + strandat 512.735 kb on + strandat 512.735 kb on + strandat 512.735 kb on + strandat 512.735 kb on + strandat 512.735 kb on + strandat 512.735 kb on + strandat 512.736 kb on + strandat 512.743 kb on - strandat 512.743 kb on - strandat 512.743 kb on - strandat 512.743 kb on - strandat 512.743 kb on - strandat 512.743 kb on - strandat 512.743 kb on - strandat 512.755 kb on + strandat 512.755 kb on + strandat 512.755 kb on + strandat 512.755 kb on + strandat 512.755 kb on + strandat 512.865 kb on + strand, within PGA1_c05190at 512.873 kb on - strand, within PGA1_c05190at 512.901 kb on - strand, within PGA1_c05190at 512.936 kb on + strand, within PGA1_c05190at 512.944 kb on - strand, within PGA1_c05190at 512.944 kb on - strand, within PGA1_c05190at 512.963 kb on - strand, within PGA1_c05190at 512.997 kb on + strand, within PGA1_c05190at 512.997 kb on + strand, within PGA1_c05190at 512.997 kb on + strand, within PGA1_c05190at 513.002 kb on + strand, within PGA1_c05190at 513.002 kb on + strand, within PGA1_c05190at 513.010 kb on - strand, within PGA1_c05190at 513.046 kb on + strand, within PGA1_c05190at 513.054 kb on - strand, within PGA1_c05190at 513.054 kb on - strand, within PGA1_c05190at 513.068 kb on + strand, within PGA1_c05190at 513.121 kb on - strand, within PGA1_c05190at 513.166 kb on - strand, within PGA1_c05190at 513.170 kb on + strand, within PGA1_c05190at 513.172 kb on + strand, within PGA1_c05190at 513.178 kb on - strand, within PGA1_c05190at 513.239 kb on + strand, within PGA1_c05190at 513.249 kb on + strand, within PGA1_c05190at 513.291 kb on - strand, within PGA1_c05190at 513.315 kb on + strand, within PGA1_c05190at 513.315 kb on + strand, within PGA1_c05190

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
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510,957 - PGA1_c05160 0.15 +0.1
510,967 - PGA1_c05160 0.16 +0.2
510,992 - PGA1_c05160 0.18 -0.2
511,030 - PGA1_c05160 0.21 +0.6
511,193 - PGA1_c05160 0.35 +1.9
511,193 - PGA1_c05160 0.35 -0.1
511,381 - PGA1_c05160 0.52 -0.6
511,416 - PGA1_c05160 0.55 -0.8
511,479 - PGA1_c05160 0.60 +1.2
511,479 - PGA1_c05160 0.60 -1.0
511,510 - PGA1_c05160 0.63 -0.4
511,567 - PGA1_c05160 0.68 -0.1
511,603 - PGA1_c05160 0.71 -0.3
511,638 + PGA1_c05160 0.74 +0.3
511,638 + PGA1_c05160 0.74 +1.0
511,638 + PGA1_c05160 0.74 -0.3
511,646 - PGA1_c05160 0.75 +0.0
511,646 - PGA1_c05160 0.75 -0.1
511,664 + PGA1_c05160 0.76 -0.5
511,725 - PGA1_c05160 0.81 -0.2
511,725 - PGA1_c05160 0.81 +0.9
511,772 - PGA1_c05160 0.86 +0.4
511,822 - PGA1_c05160 0.90 -1.0
511,897 + -1.9
511,913 - -0.0
512,040 + PGA1_c05170 0.28 -0.9
512,040 + PGA1_c05170 0.28 -2.2
512,042 + PGA1_c05170 0.29 -0.3
512,071 - PGA1_c05170 0.36 -0.2
512,099 - PGA1_c05170 0.43 -1.2
512,104 - PGA1_c05170 0.44 -0.6
512,104 - PGA1_c05170 0.44 -1.3
512,280 + PGA1_c05170 0.89 -0.5
512,292 + +0.8
512,306 + +0.2
512,332 + -0.8
512,340 - -0.1
512,354 - +0.4
512,354 - -1.0
512,355 - +1.5
512,355 - +0.7
512,357 + -0.3
512,357 + +0.2
512,357 + +0.7
512,357 + -0.1
512,357 + -1.5
512,357 + -1.3
512,357 + -0.5
512,357 + -0.1
512,365 - +1.3
512,365 - -1.4
512,365 - +0.3
512,367 - -0.0
512,400 + -0.6
512,400 + +0.4
512,408 - -1.1
512,420 + -0.5
512,430 + -0.8
512,430 + +0.9
512,443 - +0.7
512,457 - +0.4
512,467 + -0.7
512,554 + PGA1_c05180 0.27 +0.2
512,562 - PGA1_c05180 0.29 -0.4
512,562 - PGA1_c05180 0.29 -0.5
512,562 - PGA1_c05180 0.29 -0.8
512,591 - PGA1_c05180 0.40 +0.6
512,648 - PGA1_c05180 0.60 +0.6
512,725 - PGA1_c05180 0.88 -0.6
512,735 + -0.7
512,735 + -0.5
512,735 + +0.4
512,735 + -0.9
512,735 + -0.4
512,735 + +1.3
512,735 + +0.9
512,735 + +0.2
512,735 + +0.3
512,735 + -0.8
512,736 + +0.4
512,743 - +0.5
512,743 - -1.5
512,743 - -0.3
512,743 - -0.6
512,743 - -1.0
512,743 - -0.1
512,743 - -0.1
512,755 + -1.0
512,755 + +0.2
512,755 + +0.6
512,755 + +0.2
512,755 + -0.6
512,865 + PGA1_c05190 0.13 +0.3
512,873 - PGA1_c05190 0.14 -1.5
512,901 - PGA1_c05190 0.18 +0.1
512,936 + PGA1_c05190 0.22 +0.2
512,944 - PGA1_c05190 0.23 +0.3
512,944 - PGA1_c05190 0.23 +0.9
512,963 - PGA1_c05190 0.26 +0.5
512,997 + PGA1_c05190 0.30 +0.9
512,997 + PGA1_c05190 0.30 +0.2
512,997 + PGA1_c05190 0.30 +0.1
513,002 + PGA1_c05190 0.31 +0.7
513,002 + PGA1_c05190 0.31 -0.2
513,010 - PGA1_c05190 0.32 +0.2
513,046 + PGA1_c05190 0.36 +0.3
513,054 - PGA1_c05190 0.37 +1.1
513,054 - PGA1_c05190 0.37 -0.4
513,068 + PGA1_c05190 0.39 -0.7
513,121 - PGA1_c05190 0.45 -0.7
513,166 - PGA1_c05190 0.51 +0.1
513,170 + PGA1_c05190 0.52 -0.1
513,172 + PGA1_c05190 0.52 -2.2
513,178 - PGA1_c05190 0.53 -0.3
513,239 + PGA1_c05190 0.60 -0.6
513,249 + PGA1_c05190 0.62 -1.4
513,291 - PGA1_c05190 0.67 -1.6
513,315 + PGA1_c05190 0.70 -0.2
513,315 + PGA1_c05190 0.70 -0.4

Or see this region's nucleotide sequence