Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_65p00350 and PGA1_65p00360 are separated by 148 nucleotides PGA1_65p00360 and PGA1_65p00370 are separated by 77 nucleotides PGA1_65p00370 and PGA1_65p00380 overlap by 4 nucleotides
PGA1_65p00350: PGA1_65p00350 - hemolysin-like protein, at 46,966 to 48,567
_65p00350
PGA1_65p00360: PGA1_65p00360 - glycosyl transferase domain-containing protein, at 48,716 to 51,433
_65p00360
PGA1_65p00370: PGA1_65p00370 - putative glycosyl transferase, at 51,511 to 52,428
_65p00370
PGA1_65p00380: PGA1_65p00380 - hypothetical protein, at 52,425 to 53,744
_65p00380
Position (kb) 48
49
50
51
52 Strain fitness (log2 ratio) -2
-1
0
1 at 47.764 kb on + strand, within PGA1_65p00350 at 48.034 kb on + strand, within PGA1_65p00350 at 48.034 kb on + strand, within PGA1_65p00350 at 48.184 kb on - strand, within PGA1_65p00350 at 48.272 kb on - strand, within PGA1_65p00350 at 48.431 kb on - strand at 48.431 kb on - strand at 48.511 kb on - strand at 48.535 kb on + strand at 48.584 kb on - strand at 48.590 kb on - strand at 48.714 kb on + strand at 48.714 kb on + strand at 48.721 kb on - strand at 48.722 kb on - strand at 48.722 kb on - strand at 48.722 kb on - strand at 48.886 kb on + strand at 49.051 kb on + strand, within PGA1_65p00360 at 49.059 kb on - strand, within PGA1_65p00360 at 49.097 kb on + strand, within PGA1_65p00360 at 49.153 kb on + strand, within PGA1_65p00360 at 49.368 kb on - strand, within PGA1_65p00360 at 49.398 kb on - strand, within PGA1_65p00360 at 49.455 kb on + strand, within PGA1_65p00360 at 49.455 kb on + strand, within PGA1_65p00360 at 49.809 kb on - strand, within PGA1_65p00360 at 49.818 kb on - strand, within PGA1_65p00360 at 49.818 kb on - strand, within PGA1_65p00360 at 49.820 kb on + strand, within PGA1_65p00360 at 49.865 kb on - strand, within PGA1_65p00360 at 50.095 kb on + strand, within PGA1_65p00360 at 50.118 kb on - strand, within PGA1_65p00360 at 50.464 kb on - strand, within PGA1_65p00360 at 50.531 kb on + strand, within PGA1_65p00360 at 50.631 kb on - strand, within PGA1_65p00360 at 50.908 kb on + strand, within PGA1_65p00360 at 51.076 kb on + strand, within PGA1_65p00360 at 51.135 kb on - strand, within PGA1_65p00360 at 51.146 kb on + strand, within PGA1_65p00360 at 51.337 kb on + strand at 51.481 kb on + strand at 51.557 kb on - strand at 51.665 kb on - strand, within PGA1_65p00370 at 51.670 kb on - strand, within PGA1_65p00370 at 51.675 kb on - strand, within PGA1_65p00370 at 51.675 kb on - strand, within PGA1_65p00370 at 51.736 kb on + strand, within PGA1_65p00370 at 51.800 kb on - strand, within PGA1_65p00370 at 51.817 kb on + strand, within PGA1_65p00370 at 51.830 kb on + strand, within PGA1_65p00370 at 51.913 kb on - strand, within PGA1_65p00370 at 51.965 kb on - strand, within PGA1_65p00370 at 51.990 kb on - strand, within PGA1_65p00370 at 52.135 kb on - strand, within PGA1_65p00370 at 52.135 kb on - strand, within PGA1_65p00370 at 52.344 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 47,764 + PGA1_65p00350 0.50 +0.1 48,034 + PGA1_65p00350 0.67 +0.3 48,034 + PGA1_65p00350 0.67 +0.2 48,184 - PGA1_65p00350 0.76 +0.8 48,272 - PGA1_65p00350 0.82 -0.8 48,431 - +1.0 48,431 - -0.4 48,511 - -2.7 48,535 + +0.5 48,584 - +0.9 48,590 - +0.2 48,714 + +1.1 48,714 + -0.0 48,721 - -0.5 48,722 - +0.2 48,722 - +0.3 48,722 - -0.2 48,886 + -1.4 49,051 + PGA1_65p00360 0.12 -0.3 49,059 - PGA1_65p00360 0.13 -2.4 49,097 + PGA1_65p00360 0.14 -0.7 49,153 + PGA1_65p00360 0.16 -1.2 49,368 - PGA1_65p00360 0.24 -1.8 49,398 - PGA1_65p00360 0.25 -0.2 49,455 + PGA1_65p00360 0.27 -1.5 49,455 + PGA1_65p00360 0.27 -1.0 49,809 - PGA1_65p00360 0.40 -0.2 49,818 - PGA1_65p00360 0.41 -0.8 49,818 - PGA1_65p00360 0.41 -0.5 49,820 + PGA1_65p00360 0.41 +1.1 49,865 - PGA1_65p00360 0.42 +0.2 50,095 + PGA1_65p00360 0.51 -1.1 50,118 - PGA1_65p00360 0.52 -1.4 50,464 - PGA1_65p00360 0.64 +0.4 50,531 + PGA1_65p00360 0.67 -0.1 50,631 - PGA1_65p00360 0.70 -0.2 50,908 + PGA1_65p00360 0.81 +1.2 51,076 + PGA1_65p00360 0.87 -0.9 51,135 - PGA1_65p00360 0.89 +0.5 51,146 + PGA1_65p00360 0.89 -0.5 51,337 + -0.2 51,481 + -1.7 51,557 - -0.3 51,665 - PGA1_65p00370 0.17 -1.5 51,670 - PGA1_65p00370 0.17 +0.1 51,675 - PGA1_65p00370 0.18 +0.1 51,675 - PGA1_65p00370 0.18 +0.3 51,736 + PGA1_65p00370 0.25 -0.1 51,800 - PGA1_65p00370 0.31 +0.3 51,817 + PGA1_65p00370 0.33 -1.0 51,830 + PGA1_65p00370 0.35 +0.6 51,913 - PGA1_65p00370 0.44 +0.2 51,965 - PGA1_65p00370 0.49 +0.3 51,990 - PGA1_65p00370 0.52 +0.4 52,135 - PGA1_65p00370 0.68 +0.3 52,135 - PGA1_65p00370 0.68 +0.5 52,344 - -1.0
Or see this region's nucleotide sequence