Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_78p00250

Experiment: m.b. Fusidic 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_78p00240 and PGA1_78p00250 are separated by 92 nucleotidesPGA1_78p00250 and PGA1_78p00260 are separated by 165 nucleotides PGA1_78p00240: PGA1_78p00240 - Uncharacterized protein conserved in bacteria, at 27,819 to 30,284 _78p00240 PGA1_78p00250: PGA1_78p00250 - putative HTH-type transcriptional regulator, at 30,377 to 30,988 _78p00250 PGA1_78p00260: PGA1_78p00260 - dihydrolipoyl dehydrogenase LpdA, at 31,154 to 32,536 _78p00260 Position (kb) 30 31Strain fitness (log2 ratio) -1 0 1at 29.535 kb on - strand, within PGA1_78p00240at 29.614 kb on - strand, within PGA1_78p00240at 29.826 kb on + strand, within PGA1_78p00240at 30.437 kb on + strandat 30.644 kb on - strand, within PGA1_78p00250at 30.644 kb on - strand, within PGA1_78p00250at 30.689 kb on - strand, within PGA1_78p00250at 30.919 kb on + strand, within PGA1_78p00250at 31.115 kb on + strandat 31.315 kb on + strand, within PGA1_78p00260at 31.644 kb on + strand, within PGA1_78p00260

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
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29,535 - PGA1_78p00240 0.70 +0.8
29,614 - PGA1_78p00240 0.73 +0.5
29,826 + PGA1_78p00240 0.81 +0.1
30,437 + -0.0
30,644 - PGA1_78p00250 0.44 -0.9
30,644 - PGA1_78p00250 0.44 +0.4
30,689 - PGA1_78p00250 0.51 +0.8
30,919 + PGA1_78p00250 0.89 +1.0
31,115 + +1.6
31,315 + PGA1_78p00260 0.12 +0.1
31,644 + PGA1_78p00260 0.35 -0.8

Or see this region's nucleotide sequence