Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_78p00040 and PGA1_78p00050 are separated by 261 nucleotides PGA1_78p00050 and PGA1_78p00060 are separated by 166 nucleotides PGA1_78p00060 and PGA1_78p00070 are separated by 83 nucleotides
PGA1_78p00040: PGA1_78p00040 - hydrogen peroxide-inducible genes activator OxyR, at 4,543 to 5,487
_78p00040
PGA1_78p00050: PGA1_78p00050 - peroxidase/catalase HPI, at 5,749 to 7,917
_78p00050
PGA1_78p00060: PGA1_78p00060 - Uncharacterized protein conserved in bacteria, at 8,084 to 8,437
_78p00060
PGA1_78p00070: PGA1_78p00070 - 'RNA polymerase sigma-70, ECF subfamily; ECF26 subgroup', at 8,521 to 9,078
_78p00070
Position (kb) 5
6
7
8 Strain fitness (log2 ratio) -2
-1
0
1 at 4.843 kb on - strand, within PGA1_78p00040 at 4.865 kb on - strand, within PGA1_78p00040 at 4.872 kb on + strand, within PGA1_78p00040 at 5.324 kb on - strand, within PGA1_78p00040 at 5.547 kb on - strand at 5.575 kb on + strand at 5.673 kb on - strand at 6.134 kb on + strand, within PGA1_78p00050 at 6.192 kb on + strand, within PGA1_78p00050 at 6.310 kb on + strand, within PGA1_78p00050 at 6.824 kb on - strand, within PGA1_78p00050 at 6.851 kb on + strand, within PGA1_78p00050 at 6.955 kb on + strand, within PGA1_78p00050 at 7.158 kb on - strand, within PGA1_78p00050 at 7.178 kb on + strand, within PGA1_78p00050 at 7.186 kb on - strand at 7.270 kb on + strand, within PGA1_78p00050 at 7.280 kb on + strand, within PGA1_78p00050 at 7.338 kb on - strand, within PGA1_78p00050 at 8.064 kb on + strand at 8.064 kb on + strand at 8.067 kb on - strand at 8.112 kb on + strand at 8.145 kb on - strand, within PGA1_78p00060 at 8.200 kb on - strand, within PGA1_78p00060 at 8.200 kb on - strand, within PGA1_78p00060 at 8.207 kb on - strand, within PGA1_78p00060 at 8.887 kb on + strand, within PGA1_78p00070
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 4,843 - PGA1_78p00040 0.32 -0.8 4,865 - PGA1_78p00040 0.34 -1.6 4,872 + PGA1_78p00040 0.35 +0.3 5,324 - PGA1_78p00040 0.83 +0.4 5,547 - -0.7 5,575 + -0.2 5,673 - +0.3 6,134 + PGA1_78p00050 0.18 -0.3 6,192 + PGA1_78p00050 0.20 +0.1 6,310 + PGA1_78p00050 0.26 -2.1 6,824 - PGA1_78p00050 0.50 +1.0 6,851 + PGA1_78p00050 0.51 -0.0 6,955 + PGA1_78p00050 0.56 -1.6 7,158 - PGA1_78p00050 0.65 -1.6 7,178 + PGA1_78p00050 0.66 -0.5 7,186 - -0.5 7,270 + PGA1_78p00050 0.70 +0.8 7,280 + PGA1_78p00050 0.71 +0.2 7,338 - PGA1_78p00050 0.73 -0.3 8,064 + -0.2 8,064 + -0.0 8,067 - -0.1 8,112 + -0.6 8,145 - PGA1_78p00060 0.17 -0.4 8,200 - PGA1_78p00060 0.33 +0.2 8,200 - PGA1_78p00060 0.33 +0.4 8,207 - PGA1_78p00060 0.35 +1.2 8,887 + PGA1_78p00070 0.66 -0.0
Or see this region's nucleotide sequence