Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01270 and PGA1_262p01280 are separated by 2 nucleotides PGA1_262p01280 and PGA1_262p01290 are separated by 97 nucleotides PGA1_262p01290 and PGA1_262p01300 are separated by 156 nucleotides PGA1_262p01300 and PGA1_262p01310 are separated by 125 nucleotides
PGA1_262p01270: PGA1_262p01270 - Uncharacterized conserved protein, at 138,503 to 139,261
_262p01270
PGA1_262p01280: PGA1_262p01280 - transcriptional regulator, TetR family, at 139,264 to 139,872
_262p01280
PGA1_262p01290: PGA1_262p01290 - transcriptional regulator, AraC family, at 139,970 to 140,977
_262p01290
PGA1_262p01300: PGA1_262p01300 - Cupin domain., at 141,134 to 141,574
_262p01300
PGA1_262p01310: PGA1_262p01310 - putative flavin-containing monooxygenase, at 141,700 to 143,187
_262p01310
Position (kb) 139
140
141 Strain fitness (log2 ratio) -1
0
1
2 at 139.092 kb on - strand, within PGA1_262p01270 at 139.151 kb on + strand, within PGA1_262p01270 at 139.579 kb on + strand, within PGA1_262p01280 at 139.734 kb on - strand, within PGA1_262p01280 at 139.734 kb on - strand, within PGA1_262p01280 at 139.734 kb on - strand, within PGA1_262p01280 at 139.770 kb on - strand, within PGA1_262p01280 at 140.074 kb on - strand, within PGA1_262p01290 at 140.079 kb on - strand, within PGA1_262p01290 at 140.152 kb on + strand, within PGA1_262p01290 at 140.215 kb on - strand, within PGA1_262p01290 at 140.215 kb on - strand, within PGA1_262p01290 at 140.446 kb on + strand, within PGA1_262p01290 at 140.454 kb on - strand, within PGA1_262p01290 at 140.533 kb on - strand, within PGA1_262p01290 at 140.620 kb on - strand, within PGA1_262p01290 at 140.637 kb on + strand, within PGA1_262p01290 at 140.647 kb on + strand, within PGA1_262p01290 at 140.908 kb on + strand at 140.950 kb on - strand at 140.962 kb on + strand at 140.988 kb on + strand at 141.098 kb on - strand at 141.178 kb on + strand, within PGA1_262p01300 at 141.197 kb on - strand, within PGA1_262p01300 at 141.357 kb on + strand, within PGA1_262p01300 at 141.407 kb on + strand, within PGA1_262p01300 at 141.476 kb on - strand, within PGA1_262p01300 at 141.523 kb on + strand, within PGA1_262p01300 at 141.557 kb on + strand at 141.729 kb on - strand at 141.802 kb on - strand at 141.924 kb on + strand, within PGA1_262p01310 at 141.947 kb on - strand, within PGA1_262p01310
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 139,092 - PGA1_262p01270 0.78 -1.1 139,151 + PGA1_262p01270 0.85 -0.1 139,579 + PGA1_262p01280 0.52 +0.0 139,734 - PGA1_262p01280 0.77 -0.3 139,734 - PGA1_262p01280 0.77 +0.9 139,734 - PGA1_262p01280 0.77 -1.2 139,770 - PGA1_262p01280 0.83 +0.4 140,074 - PGA1_262p01290 0.10 +0.8 140,079 - PGA1_262p01290 0.11 +0.9 140,152 + PGA1_262p01290 0.18 +0.8 140,215 - PGA1_262p01290 0.24 -0.2 140,215 - PGA1_262p01290 0.24 +0.2 140,446 + PGA1_262p01290 0.47 -0.1 140,454 - PGA1_262p01290 0.48 -0.3 140,533 - PGA1_262p01290 0.56 +0.5 140,620 - PGA1_262p01290 0.64 +0.9 140,637 + PGA1_262p01290 0.66 +0.7 140,647 + PGA1_262p01290 0.67 +0.9 140,908 + +0.6 140,950 - -0.2 140,962 + -0.3 140,988 + +0.5 141,098 - +0.3 141,178 + PGA1_262p01300 0.10 -0.8 141,197 - PGA1_262p01300 0.14 +2.4 141,357 + PGA1_262p01300 0.51 +0.0 141,407 + PGA1_262p01300 0.62 -0.6 141,476 - PGA1_262p01300 0.78 -0.5 141,523 + PGA1_262p01300 0.88 -0.1 141,557 + +0.5 141,729 - +0.3 141,802 - +0.7 141,924 + PGA1_262p01310 0.15 -0.0 141,947 - PGA1_262p01310 0.17 +0.1
Or see this region's nucleotide sequence