Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00720 and PGA1_262p00730 are separated by 73 nucleotides PGA1_262p00730 and PGA1_262p00740 overlap by 9 nucleotides
PGA1_262p00720: PGA1_262p00720 - serine/threonine-protein kinase RsbT-like protein, at 81,138 to 82,151
_262p00720
PGA1_262p00730: PGA1_262p00730 - putative signal transduction histidine kinase, at 82,225 to 83,316
_262p00730
PGA1_262p00740: PGA1_262p00740 - putative peptidase, family M20/M25/M40, at 83,308 to 84,435
_262p00740
Position (kb) 82
83
84 Strain fitness (log2 ratio) -1
0
1 at 81.238 kb on - strand at 81.376 kb on + strand, within PGA1_262p00720 at 81.437 kb on + strand, within PGA1_262p00720 at 81.497 kb on + strand, within PGA1_262p00720 at 81.586 kb on - strand, within PGA1_262p00720 at 81.639 kb on + strand, within PGA1_262p00720 at 81.657 kb on - strand, within PGA1_262p00720 at 81.732 kb on - strand, within PGA1_262p00720 at 81.822 kb on - strand, within PGA1_262p00720 at 82.465 kb on - strand, within PGA1_262p00730 at 83.008 kb on + strand, within PGA1_262p00730 at 83.057 kb on + strand, within PGA1_262p00730 at 83.066 kb on + strand, within PGA1_262p00730 at 83.066 kb on + strand, within PGA1_262p00730 at 83.381 kb on + strand at 83.489 kb on + strand, within PGA1_262p00740 at 83.489 kb on + strand, within PGA1_262p00740 at 83.491 kb on + strand, within PGA1_262p00740 at 83.497 kb on - strand, within PGA1_262p00740 at 83.497 kb on - strand, within PGA1_262p00740 at 83.547 kb on - strand, within PGA1_262p00740 at 83.588 kb on - strand, within PGA1_262p00740 at 83.588 kb on - strand, within PGA1_262p00740 at 83.617 kb on - strand, within PGA1_262p00740 at 83.660 kb on - strand, within PGA1_262p00740 at 83.869 kb on - strand, within PGA1_262p00740 at 83.971 kb on + strand, within PGA1_262p00740 at 84.125 kb on - strand, within PGA1_262p00740 at 84.189 kb on - strand, within PGA1_262p00740 at 84.251 kb on - strand, within PGA1_262p00740 at 84.291 kb on - strand, within PGA1_262p00740
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 81,238 - +0.9 81,376 + PGA1_262p00720 0.23 -1.3 81,437 + PGA1_262p00720 0.29 -0.3 81,497 + PGA1_262p00720 0.35 -0.2 81,586 - PGA1_262p00720 0.44 -0.1 81,639 + PGA1_262p00720 0.49 +1.1 81,657 - PGA1_262p00720 0.51 -0.9 81,732 - PGA1_262p00720 0.59 +0.3 81,822 - PGA1_262p00720 0.67 +0.4 82,465 - PGA1_262p00730 0.22 -0.5 83,008 + PGA1_262p00730 0.72 +0.4 83,057 + PGA1_262p00730 0.76 +0.8 83,066 + PGA1_262p00730 0.77 -0.1 83,066 + PGA1_262p00730 0.77 +0.6 83,381 + -0.8 83,489 + PGA1_262p00740 0.16 +0.2 83,489 + PGA1_262p00740 0.16 +0.4 83,491 + PGA1_262p00740 0.16 +0.1 83,497 - PGA1_262p00740 0.17 -0.2 83,497 - PGA1_262p00740 0.17 +0.6 83,547 - PGA1_262p00740 0.21 +1.1 83,588 - PGA1_262p00740 0.25 +0.1 83,588 - PGA1_262p00740 0.25 -0.3 83,617 - PGA1_262p00740 0.27 +1.2 83,660 - PGA1_262p00740 0.31 -0.0 83,869 - PGA1_262p00740 0.50 +0.7 83,971 + PGA1_262p00740 0.59 -0.5 84,125 - PGA1_262p00740 0.72 +0.4 84,189 - PGA1_262p00740 0.78 +0.1 84,251 - PGA1_262p00740 0.84 +0.8 84,291 - PGA1_262p00740 0.87 +0.2
Or see this region's nucleotide sequence