Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c35250 and PGA1_c35260 are separated by 1 nucleotides PGA1_c35260 and PGA1_c35270 are separated by 334 nucleotides PGA1_c35270 and PGA1_c35280 are separated by 81 nucleotides PGA1_c35280 and PGA1_c35290 overlap by 4 nucleotides
PGA1_c35250: PGA1_c35250 - hypothetical protein, at 3,696,276 to 3,697,346
_c35250
PGA1_c35260: PGA1_c35260 - ATP-dependent protease HslV, at 3,697,348 to 3,697,911
_c35260
PGA1_c35270: PGA1_c35270 - Uncharacterized conserved small protein, at 3,698,246 to 3,698,440
_c35270
PGA1_c35280: PGA1_c35280 - conserved hypothetical protein, at 3,698,522 to 3,698,887
_c35280
PGA1_c35290: PGA1_c35290 - Conserved hypothetical protein (Lin0512_fam)., at 3,698,884 to 3,699,231
_c35290
Position (kb)
3697
3698 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3696.571 kb on - strand, within PGA1_c35250 at 3696.585 kb on - strand, within PGA1_c35250 at 3696.585 kb on - strand, within PGA1_c35250 at 3696.598 kb on + strand, within PGA1_c35250 at 3696.618 kb on + strand, within PGA1_c35250 at 3696.619 kb on - strand, within PGA1_c35250 at 3696.630 kb on + strand, within PGA1_c35250 at 3696.635 kb on + strand, within PGA1_c35250 at 3696.698 kb on + strand, within PGA1_c35250 at 3696.704 kb on + strand, within PGA1_c35250 at 3696.704 kb on + strand, within PGA1_c35250 at 3696.704 kb on + strand, within PGA1_c35250 at 3696.776 kb on + strand, within PGA1_c35250 at 3696.817 kb on - strand, within PGA1_c35250 at 3696.817 kb on - strand, within PGA1_c35250 at 3696.900 kb on - strand, within PGA1_c35250 at 3696.902 kb on + strand, within PGA1_c35250 at 3696.910 kb on - strand, within PGA1_c35250 at 3696.935 kb on - strand, within PGA1_c35250 at 3697.017 kb on - strand, within PGA1_c35250 at 3697.060 kb on + strand, within PGA1_c35250 at 3697.068 kb on - strand, within PGA1_c35250 at 3697.068 kb on - strand, within PGA1_c35250 at 3697.068 kb on - strand, within PGA1_c35250 at 3697.068 kb on - strand, within PGA1_c35250 at 3697.068 kb on - strand, within PGA1_c35250 at 3697.078 kb on - strand, within PGA1_c35250 at 3697.101 kb on + strand, within PGA1_c35250 at 3697.115 kb on - strand, within PGA1_c35250 at 3697.115 kb on - strand, within PGA1_c35250 at 3697.184 kb on + strand, within PGA1_c35250 at 3697.191 kb on + strand, within PGA1_c35250 at 3697.192 kb on + strand, within PGA1_c35250 at 3697.192 kb on + strand, within PGA1_c35250 at 3697.192 kb on + strand, within PGA1_c35250 at 3697.192 kb on + strand, within PGA1_c35250 at 3697.200 kb on - strand, within PGA1_c35250 at 3697.200 kb on - strand, within PGA1_c35250 at 3697.200 kb on - strand, within PGA1_c35250 at 3697.200 kb on - strand, within PGA1_c35250 at 3697.271 kb on - strand at 3697.298 kb on + strand at 3697.298 kb on + strand at 3697.298 kb on + strand at 3697.298 kb on + strand at 3697.298 kb on + strand at 3697.298 kb on + strand at 3697.346 kb on + strand at 3697.349 kb on - strand at 3697.354 kb on - strand at 3697.374 kb on - strand at 3697.469 kb on - strand, within PGA1_c35260 at 3697.588 kb on + strand, within PGA1_c35260 at 3697.588 kb on + strand, within PGA1_c35260 at 3697.716 kb on - strand, within PGA1_c35260 at 3697.800 kb on - strand, within PGA1_c35260 at 3697.819 kb on + strand, within PGA1_c35260 at 3697.931 kb on - strand at 3697.998 kb on - strand at 3698.076 kb on + strand at 3698.265 kb on + strand at 3698.265 kb on + strand at 3698.319 kb on + strand, within PGA1_c35270 at 3698.385 kb on + strand, within PGA1_c35270 at 3698.393 kb on - strand, within PGA1_c35270 at 3698.442 kb on - strand at 3698.442 kb on - strand at 3698.450 kb on + strand at 3698.453 kb on - strand at 3698.477 kb on + strand at 3698.509 kb on - strand at 3698.541 kb on + strand at 3698.541 kb on + strand at 3698.555 kb on - strand at 3698.572 kb on - strand, within PGA1_c35280 at 3698.630 kb on + strand, within PGA1_c35280 at 3698.683 kb on + strand, within PGA1_c35280 at 3698.748 kb on + strand, within PGA1_c35280 at 3698.754 kb on - strand, within PGA1_c35280 at 3698.754 kb on - strand, within PGA1_c35280 at 3698.754 kb on - strand, within PGA1_c35280 at 3698.795 kb on + strand, within PGA1_c35280 at 3698.803 kb on + strand, within PGA1_c35280 at 3698.803 kb on - strand, within PGA1_c35280 at 3698.817 kb on + strand, within PGA1_c35280 at 3698.817 kb on + strand, within PGA1_c35280 at 3698.817 kb on + strand, within PGA1_c35280 at 3698.822 kb on + strand, within PGA1_c35280 at 3698.823 kb on + strand, within PGA1_c35280 at 3698.823 kb on + strand, within PGA1_c35280 at 3698.823 kb on + strand, within PGA1_c35280 at 3698.826 kb on - strand, within PGA1_c35280 at 3698.830 kb on - strand, within PGA1_c35280 at 3698.831 kb on - strand, within PGA1_c35280 at 3698.831 kb on - strand, within PGA1_c35280
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 3,696,571 - PGA1_c35250 0.28 -0.7 3,696,585 - PGA1_c35250 0.29 +0.1 3,696,585 - PGA1_c35250 0.29 +0.0 3,696,598 + PGA1_c35250 0.30 -1.3 3,696,618 + PGA1_c35250 0.32 +0.4 3,696,619 - PGA1_c35250 0.32 -0.4 3,696,630 + PGA1_c35250 0.33 +0.2 3,696,635 + PGA1_c35250 0.34 -0.3 3,696,698 + PGA1_c35250 0.39 -1.0 3,696,704 + PGA1_c35250 0.40 +1.4 3,696,704 + PGA1_c35250 0.40 +0.3 3,696,704 + PGA1_c35250 0.40 +0.1 3,696,776 + PGA1_c35250 0.47 +0.4 3,696,817 - PGA1_c35250 0.51 +0.0 3,696,817 - PGA1_c35250 0.51 +0.5 3,696,900 - PGA1_c35250 0.58 +0.2 3,696,902 + PGA1_c35250 0.58 +1.3 3,696,910 - PGA1_c35250 0.59 +0.3 3,696,935 - PGA1_c35250 0.62 +0.7 3,697,017 - PGA1_c35250 0.69 +0.1 3,697,060 + PGA1_c35250 0.73 +0.1 3,697,068 - PGA1_c35250 0.74 -0.5 3,697,068 - PGA1_c35250 0.74 +0.3 3,697,068 - PGA1_c35250 0.74 +0.9 3,697,068 - PGA1_c35250 0.74 -0.6 3,697,068 - PGA1_c35250 0.74 -0.3 3,697,078 - PGA1_c35250 0.75 +1.3 3,697,101 + PGA1_c35250 0.77 +1.3 3,697,115 - PGA1_c35250 0.78 -0.2 3,697,115 - PGA1_c35250 0.78 +0.1 3,697,184 + PGA1_c35250 0.85 -0.0 3,697,191 + PGA1_c35250 0.85 +2.0 3,697,192 + PGA1_c35250 0.86 +1.0 3,697,192 + PGA1_c35250 0.86 -0.8 3,697,192 + PGA1_c35250 0.86 +1.4 3,697,192 + PGA1_c35250 0.86 +0.1 3,697,200 - PGA1_c35250 0.86 -0.1 3,697,200 - PGA1_c35250 0.86 +0.8 3,697,200 - PGA1_c35250 0.86 +0.4 3,697,200 - PGA1_c35250 0.86 +0.2 3,697,271 - +0.1 3,697,298 + -0.1 3,697,298 + +2.1 3,697,298 + +0.5 3,697,298 + +0.2 3,697,298 + +0.2 3,697,298 + -0.1 3,697,346 + -0.0 3,697,349 - -0.5 3,697,354 - +0.8 3,697,374 - +0.8 3,697,469 - PGA1_c35260 0.21 +0.4 3,697,588 + PGA1_c35260 0.43 -0.3 3,697,588 + PGA1_c35260 0.43 +0.6 3,697,716 - PGA1_c35260 0.65 +0.2 3,697,800 - PGA1_c35260 0.80 +0.5 3,697,819 + PGA1_c35260 0.84 +1.8 3,697,931 - +0.2 3,697,998 - -0.2 3,698,076 + -0.2 3,698,265 + -0.3 3,698,265 + -0.5 3,698,319 + PGA1_c35270 0.37 +0.0 3,698,385 + PGA1_c35270 0.71 -0.7 3,698,393 - PGA1_c35270 0.75 -0.6 3,698,442 - -2.0 3,698,442 - +0.3 3,698,450 + +0.1 3,698,453 - -0.8 3,698,477 + -0.9 3,698,509 - -0.5 3,698,541 + +0.3 3,698,541 + -0.8 3,698,555 - +0.1 3,698,572 - PGA1_c35280 0.14 +0.2 3,698,630 + PGA1_c35280 0.30 -0.1 3,698,683 + PGA1_c35280 0.44 -0.5 3,698,748 + PGA1_c35280 0.62 -0.1 3,698,754 - PGA1_c35280 0.63 +0.3 3,698,754 - PGA1_c35280 0.63 +0.6 3,698,754 - PGA1_c35280 0.63 -1.2 3,698,795 + PGA1_c35280 0.75 +0.7 3,698,803 + PGA1_c35280 0.77 +0.3 3,698,803 - PGA1_c35280 0.77 -1.1 3,698,817 + PGA1_c35280 0.81 +0.3 3,698,817 + PGA1_c35280 0.81 -1.5 3,698,817 + PGA1_c35280 0.81 +0.2 3,698,822 + PGA1_c35280 0.82 -0.5 3,698,823 + PGA1_c35280 0.82 +0.5 3,698,823 + PGA1_c35280 0.82 -0.4 3,698,823 + PGA1_c35280 0.82 +0.2 3,698,826 - PGA1_c35280 0.83 -1.2 3,698,830 - PGA1_c35280 0.84 -0.7 3,698,831 - PGA1_c35280 0.84 +1.3 3,698,831 - PGA1_c35280 0.84 +0.5
Or see this region's nucleotide sequence