Strain Fitness in Marinobacter adhaerens HP15 around HP15_3225

Experiment: m.b. Sisomicin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3224 and HP15_3225 are separated by 224 nucleotidesHP15_3225 and HP15_3226 overlap by 4 nucleotidesHP15_3226 and HP15_3227 are separated by 84 nucleotides HP15_3224: HP15_3224 - family finger-like protein, at 3,376,332 to 3,377,588 _3224 HP15_3225: HP15_3225 - tRNA-dihydrouridine synthase B, at 3,377,813 to 3,378,811 _3225 HP15_3226: HP15_3226 - fis-like DNA-binding protein, at 3,378,808 to 3,379,125 _3226 HP15_3227: HP15_3227 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase, at 3,379,210 to 3,380,790 _3227 Position (kb) 3377 3378 3379Strain fitness (log2 ratio) -1 0 1 2at 3376.817 kb on + strand, within HP15_3224at 3376.825 kb on - strand, within HP15_3224at 3376.868 kb on + strand, within HP15_3224at 3376.898 kb on - strand, within HP15_3224at 3376.939 kb on + strand, within HP15_3224at 3376.948 kb on + strand, within HP15_3224at 3377.118 kb on + strand, within HP15_3224at 3377.126 kb on - strand, within HP15_3224at 3377.144 kb on - strand, within HP15_3224at 3377.147 kb on + strand, within HP15_3224at 3377.203 kb on + strand, within HP15_3224at 3377.211 kb on - strand, within HP15_3224at 3377.211 kb on - strand, within HP15_3224at 3377.211 kb on - strand, within HP15_3224at 3377.241 kb on - strand, within HP15_3224at 3377.270 kb on - strand, within HP15_3224at 3377.456 kb on + strand, within HP15_3224at 3377.583 kb on + strandat 3377.924 kb on - strand, within HP15_3225at 3378.001 kb on + strand, within HP15_3225at 3378.012 kb on + strand, within HP15_3225at 3378.226 kb on - strand, within HP15_3225at 3378.405 kb on + strand, within HP15_3225at 3378.503 kb on + strand, within HP15_3225at 3378.503 kb on + strand, within HP15_3225at 3378.503 kb on + strand, within HP15_3225at 3378.503 kb on + strand, within HP15_3225at 3378.503 kb on + strand, within HP15_3225at 3378.503 kb on + strand, within HP15_3225at 3378.503 kb on + strand, within HP15_3225at 3378.511 kb on - strand, within HP15_3225at 3378.640 kb on + strand, within HP15_3225at 3378.690 kb on + strand, within HP15_3225at 3378.741 kb on + strandat 3379.118 kb on - strandat 3379.173 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.004 mg/ml
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3,376,817 + HP15_3224 0.39 +0.1
3,376,825 - HP15_3224 0.39 +0.0
3,376,868 + HP15_3224 0.43 -1.0
3,376,898 - HP15_3224 0.45 -0.4
3,376,939 + HP15_3224 0.48 +0.1
3,376,948 + HP15_3224 0.49 +1.9
3,377,118 + HP15_3224 0.63 +0.4
3,377,126 - HP15_3224 0.63 -0.4
3,377,144 - HP15_3224 0.65 +0.3
3,377,147 + HP15_3224 0.65 -0.2
3,377,203 + HP15_3224 0.69 -0.5
3,377,211 - HP15_3224 0.70 +0.1
3,377,211 - HP15_3224 0.70 +0.3
3,377,211 - HP15_3224 0.70 +0.3
3,377,241 - HP15_3224 0.72 +0.5
3,377,270 - HP15_3224 0.75 -0.1
3,377,456 + HP15_3224 0.89 -0.0
3,377,583 + +0.3
3,377,924 - HP15_3225 0.11 +0.5
3,378,001 + HP15_3225 0.19 -1.7
3,378,012 + HP15_3225 0.20 +0.6
3,378,226 - HP15_3225 0.41 -0.1
3,378,405 + HP15_3225 0.59 +0.4
3,378,503 + HP15_3225 0.69 +0.5
3,378,503 + HP15_3225 0.69 +0.3
3,378,503 + HP15_3225 0.69 +0.3
3,378,503 + HP15_3225 0.69 +0.3
3,378,503 + HP15_3225 0.69 +0.3
3,378,503 + HP15_3225 0.69 +0.8
3,378,503 + HP15_3225 0.69 +0.7
3,378,511 - HP15_3225 0.70 +0.6
3,378,640 + HP15_3225 0.83 -0.0
3,378,690 + HP15_3225 0.88 +1.0
3,378,741 + -0.1
3,379,118 - -0.1
3,379,173 + +0.3

Or see this region's nucleotide sequence