Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c31510

Experiment: m.b. Fusidic 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c31500 and PGA1_c31510 are separated by 33 nucleotidesPGA1_c31510 and PGA1_c31520 are separated by 210 nucleotidesPGA1_c31520 and PGA1_c31530 are separated by 295 nucleotides PGA1_c31500: PGA1_c31500 - Protein of unknown function (DUF3095)., at 3,291,815 to 3,292,969 _c31500 PGA1_c31510: PGA1_c31510 - carbonic anhydrase CynT, at 3,293,003 to 3,293,653 _c31510 PGA1_c31520: PGA1_c31520 - hypothetical protein, at 3,293,864 to 3,294,187 _c31520 PGA1_c31530: PGA1_c31530 - putative cytosol aminopeptidase, at 3,294,483 to 3,295,877 _c31530 Position (kb) 3293 3294Strain fitness (log2 ratio) -2 -1 0 1 2at 3292.012 kb on - strand, within PGA1_c31500at 3292.032 kb on - strand, within PGA1_c31500at 3292.063 kb on - strand, within PGA1_c31500at 3292.065 kb on + strand, within PGA1_c31500at 3292.077 kb on + strand, within PGA1_c31500at 3292.077 kb on + strand, within PGA1_c31500at 3292.077 kb on + strand, within PGA1_c31500at 3292.077 kb on + strand, within PGA1_c31500at 3292.077 kb on + strand, within PGA1_c31500at 3292.085 kb on - strand, within PGA1_c31500at 3292.085 kb on - strand, within PGA1_c31500at 3292.146 kb on + strand, within PGA1_c31500at 3292.146 kb on + strand, within PGA1_c31500at 3292.164 kb on - strand, within PGA1_c31500at 3292.168 kb on + strand, within PGA1_c31500at 3292.183 kb on + strand, within PGA1_c31500at 3292.191 kb on - strand, within PGA1_c31500at 3292.236 kb on + strand, within PGA1_c31500at 3292.252 kb on + strand, within PGA1_c31500at 3292.265 kb on + strand, within PGA1_c31500at 3292.265 kb on + strand, within PGA1_c31500at 3292.273 kb on - strand, within PGA1_c31500at 3292.310 kb on - strand, within PGA1_c31500at 3292.343 kb on - strand, within PGA1_c31500at 3292.349 kb on + strand, within PGA1_c31500at 3292.396 kb on - strand, within PGA1_c31500at 3292.421 kb on - strand, within PGA1_c31500at 3292.496 kb on + strand, within PGA1_c31500at 3292.544 kb on + strand, within PGA1_c31500at 3292.545 kb on + strand, within PGA1_c31500at 3292.545 kb on + strand, within PGA1_c31500at 3292.609 kb on - strand, within PGA1_c31500at 3292.631 kb on + strand, within PGA1_c31500at 3292.632 kb on + strand, within PGA1_c31500at 3292.646 kb on - strand, within PGA1_c31500at 3292.689 kb on + strand, within PGA1_c31500at 3292.699 kb on + strand, within PGA1_c31500at 3292.731 kb on + strand, within PGA1_c31500at 3292.755 kb on + strand, within PGA1_c31500at 3292.854 kb on + strandat 3292.865 kb on - strandat 3292.902 kb on - strandat 3292.917 kb on + strandat 3292.917 kb on + strandat 3292.917 kb on + strandat 3292.925 kb on - strandat 3292.925 kb on - strandat 3292.925 kb on - strandat 3292.925 kb on - strandat 3292.925 kb on - strandat 3292.964 kb on + strandat 3292.970 kb on + strandat 3292.970 kb on + strandat 3292.972 kb on - strandat 3293.010 kb on + strandat 3293.010 kb on + strandat 3293.018 kb on - strandat 3293.032 kb on + strandat 3293.040 kb on - strandat 3293.083 kb on + strand, within PGA1_c31510at 3293.091 kb on - strand, within PGA1_c31510at 3293.100 kb on + strand, within PGA1_c31510at 3293.165 kb on - strand, within PGA1_c31510at 3293.187 kb on - strand, within PGA1_c31510at 3293.241 kb on - strand, within PGA1_c31510at 3293.286 kb on + strand, within PGA1_c31510at 3293.296 kb on + strand, within PGA1_c31510at 3293.296 kb on + strand, within PGA1_c31510at 3293.301 kb on + strand, within PGA1_c31510at 3293.304 kb on - strand, within PGA1_c31510at 3293.304 kb on - strand, within PGA1_c31510at 3293.304 kb on - strand, within PGA1_c31510at 3293.304 kb on - strand, within PGA1_c31510at 3293.306 kb on + strand, within PGA1_c31510at 3293.314 kb on - strand, within PGA1_c31510at 3293.314 kb on - strand, within PGA1_c31510at 3293.341 kb on - strand, within PGA1_c31510at 3293.350 kb on - strand, within PGA1_c31510at 3293.356 kb on + strand, within PGA1_c31510at 3293.393 kb on + strand, within PGA1_c31510at 3293.393 kb on + strand, within PGA1_c31510at 3293.431 kb on - strand, within PGA1_c31510at 3293.452 kb on - strand, within PGA1_c31510at 3293.467 kb on - strand, within PGA1_c31510at 3293.505 kb on - strand, within PGA1_c31510at 3293.546 kb on - strand, within PGA1_c31510at 3293.570 kb on + strand, within PGA1_c31510at 3293.588 kb on + strand, within PGA1_c31510at 3293.588 kb on + strand, within PGA1_c31510at 3293.613 kb on + strandat 3293.620 kb on + strandat 3293.630 kb on + strandat 3293.635 kb on - strandat 3293.638 kb on - strandat 3293.689 kb on - strandat 3293.737 kb on - strandat 3293.748 kb on + strandat 3293.748 kb on + strandat 3293.748 kb on + strandat 3293.748 kb on + strandat 3293.748 kb on + strandat 3293.748 kb on + strandat 3293.748 kb on + strandat 3293.756 kb on - strandat 3293.756 kb on - strandat 3293.756 kb on - strandat 3293.756 kb on - strandat 3293.756 kb on - strandat 3293.756 kb on - strandat 3293.756 kb on - strandat 3293.756 kb on - strandat 3293.756 kb on - strandat 3293.756 kb on - strandat 3293.761 kb on + strandat 3293.761 kb on + strandat 3293.761 kb on + strandat 3293.761 kb on + strandat 3293.761 kb on + strandat 3293.769 kb on - strandat 3293.769 kb on - strandat 3293.769 kb on - strandat 3293.769 kb on - strandat 3293.769 kb on - strandat 3293.769 kb on - strandat 3293.770 kb on - strandat 3293.781 kb on - strandat 3293.782 kb on - strandat 3293.796 kb on + strandat 3293.796 kb on + strandat 3293.796 kb on + strandat 3293.818 kb on + strandat 3293.823 kb on + strandat 3293.831 kb on - strandat 3293.833 kb on - strandat 3293.833 kb on - strandat 3293.837 kb on + strandat 3293.854 kb on - strandat 3293.859 kb on - strandat 3293.906 kb on - strand, within PGA1_c31520at 3293.911 kb on + strand, within PGA1_c31520at 3293.914 kb on - strand, within PGA1_c31520at 3293.914 kb on - strand, within PGA1_c31520at 3293.947 kb on + strand, within PGA1_c31520at 3293.955 kb on - strand, within PGA1_c31520at 3294.034 kb on - strand, within PGA1_c31520at 3294.060 kb on + strand, within PGA1_c31520at 3294.060 kb on + strand, within PGA1_c31520at 3294.060 kb on + strand, within PGA1_c31520at 3294.060 kb on + strand, within PGA1_c31520at 3294.060 kb on + strand, within PGA1_c31520at 3294.068 kb on - strand, within PGA1_c31520at 3294.068 kb on - strand, within PGA1_c31520at 3294.068 kb on - strand, within PGA1_c31520at 3294.068 kb on - strand, within PGA1_c31520at 3294.068 kb on - strand, within PGA1_c31520at 3294.078 kb on - strand, within PGA1_c31520at 3294.113 kb on + strand, within PGA1_c31520at 3294.126 kb on - strand, within PGA1_c31520at 3294.196 kb on - strandat 3294.206 kb on + strandat 3294.206 kb on + strandat 3294.211 kb on + strandat 3294.211 kb on + strandat 3294.219 kb on - strandat 3294.219 kb on - strandat 3294.261 kb on - strandat 3294.267 kb on + strandat 3294.267 kb on + strandat 3294.271 kb on - strandat 3294.282 kb on + strandat 3294.429 kb on + strandat 3294.474 kb on - strandat 3294.506 kb on - strandat 3294.506 kb on - strandat 3294.549 kb on + strandat 3294.559 kb on + strandat 3294.637 kb on + strand, within PGA1_c31530at 3294.641 kb on + strand, within PGA1_c31530at 3294.651 kb on - strand, within PGA1_c31530

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
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3,292,012 - PGA1_c31500 0.17 +0.1
3,292,032 - PGA1_c31500 0.19 +0.4
3,292,063 - PGA1_c31500 0.21 -0.8
3,292,065 + PGA1_c31500 0.22 +0.2
3,292,077 + PGA1_c31500 0.23 +0.2
3,292,077 + PGA1_c31500 0.23 -0.3
3,292,077 + PGA1_c31500 0.23 -0.8
3,292,077 + PGA1_c31500 0.23 +0.6
3,292,077 + PGA1_c31500 0.23 -0.3
3,292,085 - PGA1_c31500 0.23 +0.6
3,292,085 - PGA1_c31500 0.23 +0.3
3,292,146 + PGA1_c31500 0.29 -0.9
3,292,146 + PGA1_c31500 0.29 +0.6
3,292,164 - PGA1_c31500 0.30 -0.3
3,292,168 + PGA1_c31500 0.31 +0.3
3,292,183 + PGA1_c31500 0.32 +0.4
3,292,191 - PGA1_c31500 0.33 +0.4
3,292,236 + PGA1_c31500 0.36 +1.0
3,292,252 + PGA1_c31500 0.38 +0.3
3,292,265 + PGA1_c31500 0.39 +0.9
3,292,265 + PGA1_c31500 0.39 +0.1
3,292,273 - PGA1_c31500 0.40 -0.1
3,292,310 - PGA1_c31500 0.43 +1.1
3,292,343 - PGA1_c31500 0.46 +0.5
3,292,349 + PGA1_c31500 0.46 -0.8
3,292,396 - PGA1_c31500 0.50 +0.3
3,292,421 - PGA1_c31500 0.52 -1.5
3,292,496 + PGA1_c31500 0.59 +1.0
3,292,544 + PGA1_c31500 0.63 +1.5
3,292,545 + PGA1_c31500 0.63 +0.1
3,292,545 + PGA1_c31500 0.63 -0.3
3,292,609 - PGA1_c31500 0.69 -0.2
3,292,631 + PGA1_c31500 0.71 +0.2
3,292,632 + PGA1_c31500 0.71 -0.2
3,292,646 - PGA1_c31500 0.72 -0.4
3,292,689 + PGA1_c31500 0.76 -0.2
3,292,699 + PGA1_c31500 0.77 -0.7
3,292,731 + PGA1_c31500 0.79 +0.1
3,292,755 + PGA1_c31500 0.81 -0.2
3,292,854 + +0.5
3,292,865 - +0.1
3,292,902 - -0.6
3,292,917 + -0.0
3,292,917 + +0.4
3,292,917 + -0.6
3,292,925 - -0.1
3,292,925 - -0.2
3,292,925 - -0.7
3,292,925 - +0.1
3,292,925 - +0.5
3,292,964 + -0.2
3,292,970 + +0.2
3,292,970 + -1.7
3,292,972 - +0.1
3,293,010 + +0.1
3,293,010 + +0.3
3,293,018 - -0.1
3,293,032 + -0.9
3,293,040 - -1.1
3,293,083 + PGA1_c31510 0.12 -0.3
3,293,091 - PGA1_c31510 0.14 +0.6
3,293,100 + PGA1_c31510 0.15 -0.9
3,293,165 - PGA1_c31510 0.25 +0.3
3,293,187 - PGA1_c31510 0.28 +0.3
3,293,241 - PGA1_c31510 0.37 +0.4
3,293,286 + PGA1_c31510 0.43 +0.1
3,293,296 + PGA1_c31510 0.45 +0.6
3,293,296 + PGA1_c31510 0.45 +0.0
3,293,301 + PGA1_c31510 0.46 -1.0
3,293,304 - PGA1_c31510 0.46 +0.7
3,293,304 - PGA1_c31510 0.46 +0.8
3,293,304 - PGA1_c31510 0.46 -1.2
3,293,304 - PGA1_c31510 0.46 +0.2
3,293,306 + PGA1_c31510 0.47 -1.2
3,293,314 - PGA1_c31510 0.48 -0.1
3,293,314 - PGA1_c31510 0.48 +0.6
3,293,341 - PGA1_c31510 0.52 +0.2
3,293,350 - PGA1_c31510 0.53 +0.3
3,293,356 + PGA1_c31510 0.54 +0.7
3,293,393 + PGA1_c31510 0.60 -0.5
3,293,393 + PGA1_c31510 0.60 +0.4
3,293,431 - PGA1_c31510 0.66 -0.2
3,293,452 - PGA1_c31510 0.69 -0.7
3,293,467 - PGA1_c31510 0.71 -1.8
3,293,505 - PGA1_c31510 0.77 +0.9
3,293,546 - PGA1_c31510 0.83 +1.7
3,293,570 + PGA1_c31510 0.87 +0.6
3,293,588 + PGA1_c31510 0.90 -0.8
3,293,588 + PGA1_c31510 0.90 -1.3
3,293,613 + -0.1
3,293,620 + -0.9
3,293,630 + -0.1
3,293,635 - -0.1
3,293,638 - -0.4
3,293,689 - -0.9
3,293,737 - +1.3
3,293,748 + +0.7
3,293,748 + +0.3
3,293,748 + -0.4
3,293,748 + +0.5
3,293,748 + +0.3
3,293,748 + +0.6
3,293,748 + -1.1
3,293,756 - +0.9
3,293,756 - +1.3
3,293,756 - -0.2
3,293,756 - -1.9
3,293,756 - +0.1
3,293,756 - -1.2
3,293,756 - -0.3
3,293,756 - +0.4
3,293,756 - +0.2
3,293,756 - -0.0
3,293,761 + -0.1
3,293,761 + -0.5
3,293,761 + +1.4
3,293,761 + -0.3
3,293,761 + +0.1
3,293,769 - +0.0
3,293,769 - -0.3
3,293,769 - -1.1
3,293,769 - -1.2
3,293,769 - +0.1
3,293,769 - +1.6
3,293,770 - +0.8
3,293,781 - +0.6
3,293,782 - -0.1
3,293,796 + -0.7
3,293,796 + +0.4
3,293,796 + +0.4
3,293,818 + +0.8
3,293,823 + +0.5
3,293,831 - +1.6
3,293,833 - -0.7
3,293,833 - -0.1
3,293,837 + +0.3
3,293,854 - +0.1
3,293,859 - +0.5
3,293,906 - PGA1_c31520 0.13 -0.7
3,293,911 + PGA1_c31520 0.15 +0.8
3,293,914 - PGA1_c31520 0.15 +0.4
3,293,914 - PGA1_c31520 0.15 -0.1
3,293,947 + PGA1_c31520 0.26 +0.2
3,293,955 - PGA1_c31520 0.28 +1.2
3,294,034 - PGA1_c31520 0.52 -0.2
3,294,060 + PGA1_c31520 0.60 +0.1
3,294,060 + PGA1_c31520 0.60 -0.1
3,294,060 + PGA1_c31520 0.60 +0.9
3,294,060 + PGA1_c31520 0.60 -0.3
3,294,060 + PGA1_c31520 0.60 +2.1
3,294,068 - PGA1_c31520 0.63 +0.8
3,294,068 - PGA1_c31520 0.63 -0.2
3,294,068 - PGA1_c31520 0.63 -0.1
3,294,068 - PGA1_c31520 0.63 +0.3
3,294,068 - PGA1_c31520 0.63 -0.3
3,294,078 - PGA1_c31520 0.66 +0.3
3,294,113 + PGA1_c31520 0.77 -0.2
3,294,126 - PGA1_c31520 0.81 -0.0
3,294,196 - -0.1
3,294,206 + +0.0
3,294,206 + +0.3
3,294,211 + +0.8
3,294,211 + +0.2
3,294,219 - -0.4
3,294,219 - -0.8
3,294,261 - -0.8
3,294,267 + +0.2
3,294,267 + -0.9
3,294,271 - -0.1
3,294,282 + -0.4
3,294,429 + +0.8
3,294,474 - +0.0
3,294,506 - +0.5
3,294,506 - -0.6
3,294,549 + +0.5
3,294,559 + -1.0
3,294,637 + PGA1_c31530 0.11 +0.4
3,294,641 + PGA1_c31530 0.11 +0.2
3,294,651 - PGA1_c31530 0.12 +0.1

Or see this region's nucleotide sequence