Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c31230

Experiment: m.b. Fusidic 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c31220 and PGA1_c31230 are separated by 6 nucleotidesPGA1_c31230 and PGA1_c31240 are separated by 85 nucleotides PGA1_c31220: PGA1_c31220 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase MurA, at 3,257,846 to 3,259,117 _c31220 PGA1_c31230: PGA1_c31230 - hypothetical protein, at 3,259,124 to 3,259,303 _c31230 PGA1_c31240: PGA1_c31240 - tRNA-Thr, at 3,259,389 to 3,259,463 _c31240 Position (kb) 3259 3260Strain fitness (log2 ratio) -2 -1 0 1 2at 3259.137 kb on - strandat 3259.137 kb on - strandat 3259.137 kb on - strandat 3259.247 kb on - strand, within PGA1_c31230at 3259.259 kb on + strand, within PGA1_c31230at 3259.307 kb on - strandat 3259.308 kb on + strandat 3259.313 kb on + strandat 3259.529 kb on + strandat 3259.564 kb on + strandat 3259.573 kb on - strandat 3259.600 kb on - strandat 3259.606 kb on + strandat 3259.611 kb on + strandat 3259.611 kb on + strandat 3259.619 kb on - strandat 3259.619 kb on - strandat 3259.669 kb on + strandat 3259.671 kb on + strandat 3259.679 kb on + strandat 3259.681 kb on - strandat 3259.687 kb on + strandat 3259.690 kb on + strandat 3259.690 kb on + strandat 3259.690 kb on + strandat 3259.690 kb on + strandat 3259.692 kb on + strandat 3259.692 kb on + strandat 3259.697 kb on + strandat 3259.698 kb on - strandat 3259.698 kb on - strandat 3259.698 kb on - strandat 3259.700 kb on - strandat 3259.700 kb on - strandat 3259.701 kb on + strandat 3259.701 kb on + strandat 3259.701 kb on + strandat 3259.709 kb on - strandat 3259.709 kb on - strandat 3259.801 kb on + strandat 3259.801 kb on + strandat 3259.809 kb on + strandat 3259.817 kb on + strandat 3259.817 kb on + strandat 3259.817 kb on + strandat 3259.817 kb on + strandat 3259.818 kb on - strandat 3259.826 kb on + strandat 3259.832 kb on + strandat 3259.832 kb on + strandat 3259.841 kb on - strandat 3259.920 kb on + strandat 3259.946 kb on + strandat 3259.946 kb on + strandat 3259.949 kb on - strandat 3259.949 kb on - strandat 3259.954 kb on - strandat 3259.960 kb on - strandat 3259.967 kb on + strandat 3259.968 kb on - strandat 3259.975 kb on - strandat 3259.975 kb on - strandat 3259.975 kb on - strandat 3259.975 kb on - strandat 3260.013 kb on - strandat 3260.049 kb on + strandat 3260.049 kb on + strandat 3260.049 kb on + strandat 3260.049 kb on + strandat 3260.057 kb on + strandat 3260.057 kb on - strandat 3260.059 kb on - strandat 3260.064 kb on + strandat 3260.072 kb on - strandat 3260.072 kb on - strandat 3260.072 kb on - strandat 3260.074 kb on + strandat 3260.076 kb on + strandat 3260.076 kb on + strandat 3260.081 kb on + strandat 3260.081 kb on + strandat 3260.081 kb on + strandat 3260.084 kb on - strandat 3260.089 kb on - strandat 3260.089 kb on - strandat 3260.125 kb on - strandat 3260.135 kb on + strandat 3260.135 kb on + strandat 3260.135 kb on + strandat 3260.143 kb on - strandat 3260.143 kb on - strandat 3260.143 kb on - strandat 3260.143 kb on - strandat 3260.143 kb on - strandat 3260.143 kb on - strandat 3260.143 kb on - strandat 3260.143 kb on - strandat 3260.143 kb on - strandat 3260.143 kb on - strandat 3260.145 kb on + strandat 3260.148 kb on - strandat 3260.148 kb on - strandat 3260.148 kb on - strandat 3260.148 kb on - strandat 3260.148 kb on - strandat 3260.153 kb on - strandat 3260.153 kb on - strandat 3260.169 kb on + strandat 3260.169 kb on + strandat 3260.169 kb on + strandat 3260.169 kb on + strandat 3260.169 kb on + strandat 3260.169 kb on + strandat 3260.169 kb on + strandat 3260.169 kb on + strandat 3260.169 kb on + strandat 3260.169 kb on + strandat 3260.169 kb on + strandat 3260.169 kb on + strandat 3260.169 kb on + strandat 3260.169 kb on + strandat 3260.169 kb on + strandat 3260.169 kb on + strandat 3260.169 kb on + strandat 3260.169 kb on + strandat 3260.169 kb on + strandat 3260.169 kb on + strandat 3260.169 kb on + strandat 3260.169 kb on + strandat 3260.169 kb on + strandat 3260.169 kb on + strandat 3260.169 kb on + strandat 3260.169 kb on + strandat 3260.169 kb on + strandat 3260.169 kb on + strandat 3260.169 kb on + strandat 3260.169 kb on + strandat 3260.169 kb on + strandat 3260.169 kb on + strandat 3260.169 kb on + strandat 3260.169 kb on + strandat 3260.169 kb on + strandat 3260.169 kb on + strandat 3260.169 kb on + strandat 3260.169 kb on + strandat 3260.169 kb on + strandat 3260.169 kb on + strandat 3260.169 kb on + strandat 3260.169 kb on + strandat 3260.169 kb on + strandat 3260.177 kb on - strandat 3260.177 kb on - strandat 3260.177 kb on - strandat 3260.177 kb on - strandat 3260.177 kb on - strandat 3260.177 kb on - strandat 3260.177 kb on - strandat 3260.177 kb on - strandat 3260.177 kb on - strandat 3260.177 kb on - strandat 3260.177 kb on - strandat 3260.177 kb on - strandat 3260.177 kb on - strandat 3260.177 kb on - strandat 3260.177 kb on - strandat 3260.177 kb on - strandat 3260.177 kb on - strandat 3260.177 kb on - strandat 3260.177 kb on - strandat 3260.177 kb on - strandat 3260.177 kb on - strandat 3260.177 kb on - strandat 3260.177 kb on - strandat 3260.177 kb on - strandat 3260.177 kb on - strandat 3260.177 kb on - strandat 3260.177 kb on - strandat 3260.177 kb on - strandat 3260.177 kb on - strandat 3260.177 kb on - strandat 3260.177 kb on - strandat 3260.177 kb on - strandat 3260.177 kb on - strandat 3260.177 kb on - strandat 3260.177 kb on - strandat 3260.177 kb on - strandat 3260.177 kb on - strandat 3260.177 kb on - strandat 3260.177 kb on - strandat 3260.177 kb on - strandat 3260.204 kb on - strandat 3260.240 kb on + strandat 3260.248 kb on - strandat 3260.272 kb on + strandat 3260.284 kb on - strandat 3260.285 kb on + strandat 3260.287 kb on + strandat 3260.289 kb on - strandat 3260.289 kb on - strandat 3260.289 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
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3,259,137 - +0.1
3,259,137 - +0.8
3,259,137 - -0.2
3,259,247 - PGA1_c31230 0.68 +1.4
3,259,259 + PGA1_c31230 0.75 +0.0
3,259,307 - -0.7
3,259,308 + +0.1
3,259,313 + -0.4
3,259,529 + +0.4
3,259,564 + -0.1
3,259,573 - +0.5
3,259,600 - +0.5
3,259,606 + +0.1
3,259,611 + +0.3
3,259,611 + +0.1
3,259,619 - +0.7
3,259,619 - +0.3
3,259,669 + +0.3
3,259,671 + -0.1
3,259,679 + -0.3
3,259,681 - -0.8
3,259,687 + +0.5
3,259,690 + +0.1
3,259,690 + +0.2
3,259,690 + +0.9
3,259,690 + +0.5
3,259,692 + +0.1
3,259,692 + -0.2
3,259,697 + -0.4
3,259,698 - +0.6
3,259,698 - +0.8
3,259,698 - +1.0
3,259,700 - -0.1
3,259,700 - -1.1
3,259,701 + -0.5
3,259,701 + +0.4
3,259,701 + +0.7
3,259,709 - -0.2
3,259,709 - +0.8
3,259,801 + +0.9
3,259,801 + +0.5
3,259,809 + +0.8
3,259,817 + -0.5
3,259,817 + +0.4
3,259,817 + +0.0
3,259,817 + -0.3
3,259,818 - -0.1
3,259,826 + +0.7
3,259,832 + -1.4
3,259,832 + +0.4
3,259,841 - -0.6
3,259,920 + +0.4
3,259,946 + +0.1
3,259,946 + -0.7
3,259,949 - -0.3
3,259,949 - +0.2
3,259,954 - +0.1
3,259,960 - +0.1
3,259,967 + -0.2
3,259,968 - +1.0
3,259,975 - +0.5
3,259,975 - -0.2
3,259,975 - -0.1
3,259,975 - +0.0
3,260,013 - +0.4
3,260,049 + +0.1
3,260,049 + +0.4
3,260,049 + +0.4
3,260,049 + -1.1
3,260,057 + +0.2
3,260,057 - -0.6
3,260,059 - +0.4
3,260,064 + -0.2
3,260,072 - +0.0
3,260,072 - +0.3
3,260,072 - +0.5
3,260,074 + +0.3
3,260,076 + -0.7
3,260,076 + -0.1
3,260,081 + +0.7
3,260,081 + +0.5
3,260,081 + +0.3
3,260,084 - +0.0
3,260,089 - -0.6
3,260,089 - +0.4
3,260,125 - +0.0
3,260,135 + +0.3
3,260,135 + -0.3
3,260,135 + -0.0
3,260,143 - +0.5
3,260,143 - +0.4
3,260,143 - -0.6
3,260,143 - -1.4
3,260,143 - -0.5
3,260,143 - +1.3
3,260,143 - +0.6
3,260,143 - +0.2
3,260,143 - +0.1
3,260,143 - -0.4
3,260,145 + +1.1
3,260,148 - -2.5
3,260,148 - +0.4
3,260,148 - -0.0
3,260,148 - +0.4
3,260,148 - +0.2
3,260,153 - +0.6
3,260,153 - +0.0
3,260,169 + +0.1
3,260,169 + +0.0
3,260,169 + -0.1
3,260,169 + +0.2
3,260,169 + -0.5
3,260,169 + -1.0
3,260,169 + -0.0
3,260,169 + +0.2
3,260,169 + -0.0
3,260,169 + -0.1
3,260,169 + +0.1
3,260,169 + +0.9
3,260,169 + +1.2
3,260,169 + +0.3
3,260,169 + -0.4
3,260,169 + -0.4
3,260,169 + +0.1
3,260,169 + +0.3
3,260,169 + +0.9
3,260,169 + +0.2
3,260,169 + -0.5
3,260,169 + +0.6
3,260,169 + -1.1
3,260,169 + -1.0
3,260,169 + -0.5
3,260,169 + +0.0
3,260,169 + +0.1
3,260,169 + -0.4
3,260,169 + -0.4
3,260,169 + +0.2
3,260,169 + -0.3
3,260,169 + -0.8
3,260,169 + -0.7
3,260,169 + -0.9
3,260,169 + +0.3
3,260,169 + -1.5
3,260,169 + +0.5
3,260,169 + +1.0
3,260,169 + -0.4
3,260,169 + +1.1
3,260,169 + -0.5
3,260,169 + +0.4
3,260,169 + +1.5
3,260,177 - -0.2
3,260,177 - +0.8
3,260,177 - +0.5
3,260,177 - -0.3
3,260,177 - -0.2
3,260,177 - -0.3
3,260,177 - +1.1
3,260,177 - +0.6
3,260,177 - +0.0
3,260,177 - +0.6
3,260,177 - +1.1
3,260,177 - +0.6
3,260,177 - +0.3
3,260,177 - +0.3
3,260,177 - +0.7
3,260,177 - -0.5
3,260,177 - +0.2
3,260,177 - +0.4
3,260,177 - +0.2
3,260,177 - +0.6
3,260,177 - +0.3
3,260,177 - -0.1
3,260,177 - -0.3
3,260,177 - -0.7
3,260,177 - -0.3
3,260,177 - +1.8
3,260,177 - +0.0
3,260,177 - +0.4
3,260,177 - +0.1
3,260,177 - +0.8
3,260,177 - +1.0
3,260,177 - +0.5
3,260,177 - +0.2
3,260,177 - -1.0
3,260,177 - -1.5
3,260,177 - +1.6
3,260,177 - +0.2
3,260,177 - +0.6
3,260,177 - +1.0
3,260,177 - -0.1
3,260,204 - -1.1
3,260,240 + +0.4
3,260,248 - +0.8
3,260,272 + +1.1
3,260,284 - -0.3
3,260,285 + -0.3
3,260,287 + -0.5
3,260,289 - +0.4
3,260,289 - -1.0
3,260,289 - -1.5

Or see this region's nucleotide sequence