Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c31080 and PGA1_c31085 are separated by 545 nucleotides PGA1_c31085 and PGA1_c31100 are separated by 81 nucleotides PGA1_c31100 and PGA1_c31110 overlap by 4 nucleotides PGA1_c31110 and PGA1_c31120 overlap by 4 nucleotides PGA1_c31120 and PGA1_c31130 are separated by 202 nucleotides
PGA1_c31080: PGA1_c31080 - hypothetical protein, at 3,248,764 to 3,249,447
_c31080
PGA1_c31085: PGA1_c31085 - tRNA-Phe, at 3,249,993 to 3,250,067
_c31085
PGA1_c31100: PGA1_c31100 - Uncharacterized protein conserved in bacteria, at 3,250,149 to 3,250,331
_c31100
PGA1_c31110: PGA1_c31110 - ribonuclease E/G family protein, at 3,250,328 to 3,251,350
_c31110
PGA1_c31120: PGA1_c31120 - MAF protein, at 3,251,347 to 3,251,928
_c31120
PGA1_c31130: PGA1_c31130 - translation initiation factor IF-1, at 3,252,131 to 3,252,349
_c31130
Position (kb)
3250
3251
3252 Strain fitness (log2 ratio)
-2
-1
0
1 at 3249.344 kb on - strand, within PGA1_c31080 at 3249.356 kb on + strand, within PGA1_c31080 at 3249.366 kb on + strand, within PGA1_c31080 at 3249.374 kb on - strand, within PGA1_c31080 at 3249.377 kb on + strand, within PGA1_c31080 at 3249.377 kb on + strand, within PGA1_c31080 at 3249.377 kb on + strand, within PGA1_c31080 at 3249.377 kb on + strand, within PGA1_c31080 at 3249.385 kb on + strand at 3249.385 kb on - strand at 3249.385 kb on - strand at 3249.385 kb on - strand at 3249.385 kb on - strand at 3249.395 kb on + strand at 3249.432 kb on - strand at 3249.435 kb on + strand at 3249.437 kb on + strand at 3249.489 kb on + strand at 3249.489 kb on + strand at 3249.490 kb on - strand at 3249.499 kb on + strand at 3249.520 kb on + strand at 3249.537 kb on - strand at 3249.547 kb on + strand at 3249.563 kb on + strand at 3249.563 kb on + strand at 3249.563 kb on + strand at 3249.563 kb on + strand at 3249.564 kb on + strand at 3249.564 kb on + strand at 3249.564 kb on + strand at 3249.564 kb on + strand at 3249.566 kb on - strand at 3249.568 kb on - strand at 3249.568 kb on - strand at 3249.568 kb on - strand at 3249.571 kb on - strand at 3249.571 kb on - strand at 3249.572 kb on - strand at 3249.572 kb on - strand at 3249.572 kb on - strand at 3249.583 kb on + strand at 3249.586 kb on - strand at 3249.591 kb on - strand at 3249.613 kb on - strand at 3249.618 kb on + strand at 3249.621 kb on - strand at 3249.631 kb on - strand at 3249.650 kb on + strand at 3249.661 kb on + strand at 3249.661 kb on + strand at 3249.664 kb on + strand at 3249.666 kb on + strand at 3249.669 kb on - strand at 3249.686 kb on + strand at 3249.694 kb on - strand at 3249.754 kb on + strand at 3249.754 kb on + strand at 3249.754 kb on + strand at 3249.759 kb on + strand at 3249.763 kb on - strand at 3249.766 kb on + strand at 3249.766 kb on + strand at 3249.773 kb on - strand at 3249.776 kb on + strand at 3249.776 kb on + strand at 3249.784 kb on - strand at 3249.846 kb on - strand at 3249.846 kb on - strand at 3249.901 kb on - strand at 3249.916 kb on + strand at 3249.935 kb on + strand at 3249.942 kb on + strand at 3249.943 kb on - strand at 3250.178 kb on - strand, within PGA1_c31100 at 3250.234 kb on + strand, within PGA1_c31100 at 3250.242 kb on - strand, within PGA1_c31100 at 3250.245 kb on - strand, within PGA1_c31100 at 3250.264 kb on + strand, within PGA1_c31100 at 3250.295 kb on + strand, within PGA1_c31100 at 3250.315 kb on - strand at 3250.326 kb on + strand at 3250.334 kb on - strand at 3250.339 kb on - strand at 3250.351 kb on + strand at 3250.384 kb on + strand at 3250.390 kb on + strand at 3250.392 kb on - strand at 3250.416 kb on - strand at 3250.416 kb on - strand at 3250.510 kb on + strand, within PGA1_c31110 at 3250.510 kb on + strand, within PGA1_c31110 at 3250.510 kb on + strand, within PGA1_c31110 at 3250.518 kb on - strand, within PGA1_c31110 at 3250.568 kb on - strand, within PGA1_c31110 at 3250.612 kb on - strand, within PGA1_c31110 at 3250.632 kb on - strand, within PGA1_c31110 at 3250.661 kb on + strand, within PGA1_c31110 at 3250.679 kb on + strand, within PGA1_c31110 at 3250.717 kb on - strand, within PGA1_c31110 at 3250.761 kb on - strand, within PGA1_c31110 at 3250.786 kb on + strand, within PGA1_c31110 at 3250.796 kb on - strand, within PGA1_c31110 at 3250.807 kb on + strand, within PGA1_c31110 at 3250.807 kb on + strand, within PGA1_c31110 at 3250.815 kb on - strand, within PGA1_c31110 at 3250.921 kb on + strand, within PGA1_c31110 at 3250.929 kb on - strand, within PGA1_c31110 at 3251.020 kb on + strand, within PGA1_c31110 at 3251.033 kb on - strand, within PGA1_c31110 at 3251.054 kb on - strand, within PGA1_c31110 at 3251.089 kb on + strand, within PGA1_c31110 at 3251.089 kb on + strand, within PGA1_c31110 at 3251.089 kb on + strand, within PGA1_c31110 at 3251.089 kb on + strand, within PGA1_c31110 at 3251.092 kb on + strand, within PGA1_c31110 at 3251.092 kb on + strand, within PGA1_c31110 at 3251.094 kb on + strand, within PGA1_c31110 at 3251.100 kb on - strand, within PGA1_c31110 at 3251.115 kb on + strand, within PGA1_c31110 at 3251.128 kb on - strand, within PGA1_c31110 at 3251.138 kb on + strand, within PGA1_c31110 at 3251.158 kb on + strand, within PGA1_c31110 at 3251.207 kb on + strand, within PGA1_c31110 at 3251.294 kb on - strand at 3251.442 kb on + strand, within PGA1_c31120 at 3251.461 kb on - strand, within PGA1_c31120 at 3251.530 kb on + strand, within PGA1_c31120 at 3251.530 kb on + strand, within PGA1_c31120 at 3251.577 kb on - strand, within PGA1_c31120 at 3251.598 kb on - strand, within PGA1_c31120 at 3251.626 kb on + strand, within PGA1_c31120 at 3251.688 kb on - strand, within PGA1_c31120 at 3251.736 kb on + strand, within PGA1_c31120 at 3251.737 kb on + strand, within PGA1_c31120 at 3251.790 kb on - strand, within PGA1_c31120 at 3251.795 kb on + strand, within PGA1_c31120 at 3251.828 kb on - strand, within PGA1_c31120 at 3251.854 kb on - strand, within PGA1_c31120 at 3251.856 kb on + strand, within PGA1_c31120 at 3251.886 kb on + strand at 3251.886 kb on + strand at 3251.886 kb on + strand at 3251.894 kb on - strand at 3251.937 kb on - strand at 3251.950 kb on + strand at 3251.961 kb on - strand at 3251.961 kb on - strand at 3251.963 kb on + strand at 3251.987 kb on + strand at 3251.995 kb on - strand at 3252.041 kb on + strand at 3252.041 kb on + strand at 3252.051 kb on + strand at 3252.054 kb on - strand at 3252.059 kb on - strand at 3252.059 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 3,249,344 - PGA1_c31080 0.85 -0.2 3,249,356 + PGA1_c31080 0.87 -0.6 3,249,366 + PGA1_c31080 0.88 +1.1 3,249,374 - PGA1_c31080 0.89 -0.3 3,249,377 + PGA1_c31080 0.90 -0.5 3,249,377 + PGA1_c31080 0.90 -0.4 3,249,377 + PGA1_c31080 0.90 +0.3 3,249,377 + PGA1_c31080 0.90 -0.8 3,249,385 + -0.1 3,249,385 - -0.6 3,249,385 - +0.2 3,249,385 - +1.5 3,249,385 - +0.1 3,249,395 + +0.6 3,249,432 - -0.2 3,249,435 + -0.3 3,249,437 + -1.3 3,249,489 + +0.3 3,249,489 + -0.2 3,249,490 - +0.1 3,249,499 + +1.2 3,249,520 + -0.8 3,249,537 - -0.3 3,249,547 + +0.2 3,249,563 + +0.9 3,249,563 + -1.1 3,249,563 + -0.3 3,249,563 + +0.4 3,249,564 + -0.2 3,249,564 + -2.1 3,249,564 + +1.0 3,249,564 + -0.1 3,249,566 - +0.2 3,249,568 - +1.1 3,249,568 - -0.8 3,249,568 - -0.4 3,249,571 - -0.3 3,249,571 - -0.8 3,249,572 - +0.6 3,249,572 - +0.3 3,249,572 - +0.6 3,249,583 + +1.7 3,249,586 - -0.2 3,249,591 - -0.2 3,249,613 - -0.0 3,249,618 + -0.8 3,249,621 - -1.9 3,249,631 - -0.1 3,249,650 + -0.1 3,249,661 + +0.7 3,249,661 + -1.2 3,249,664 + +0.3 3,249,666 + -0.5 3,249,669 - +0.0 3,249,686 + +0.2 3,249,694 - +0.5 3,249,754 + +0.6 3,249,754 + -0.2 3,249,754 + +0.2 3,249,759 + +1.5 3,249,763 - -0.2 3,249,766 + -0.0 3,249,766 + +0.1 3,249,773 - +1.3 3,249,776 + -0.3 3,249,776 + -1.7 3,249,784 - -0.1 3,249,846 - -1.4 3,249,846 - -0.1 3,249,901 - +0.7 3,249,916 + +0.2 3,249,935 + +0.5 3,249,942 + +0.1 3,249,943 - -0.3 3,250,178 - PGA1_c31100 0.16 -0.1 3,250,234 + PGA1_c31100 0.46 +0.2 3,250,242 - PGA1_c31100 0.51 +0.1 3,250,245 - PGA1_c31100 0.52 +0.6 3,250,264 + PGA1_c31100 0.63 -0.1 3,250,295 + PGA1_c31100 0.80 -0.3 3,250,315 - -0.2 3,250,326 + +0.2 3,250,334 - -0.7 3,250,339 - -0.0 3,250,351 + +0.0 3,250,384 + -0.6 3,250,390 + -2.7 3,250,392 - -0.6 3,250,416 - -1.9 3,250,416 - -0.1 3,250,510 + PGA1_c31110 0.18 -1.2 3,250,510 + PGA1_c31110 0.18 +0.6 3,250,510 + PGA1_c31110 0.18 -1.0 3,250,518 - PGA1_c31110 0.19 -0.1 3,250,568 - PGA1_c31110 0.23 -0.6 3,250,612 - PGA1_c31110 0.28 -0.1 3,250,632 - PGA1_c31110 0.30 -1.8 3,250,661 + PGA1_c31110 0.33 -0.6 3,250,679 + PGA1_c31110 0.34 -0.5 3,250,717 - PGA1_c31110 0.38 +0.1 3,250,761 - PGA1_c31110 0.42 -0.5 3,250,786 + PGA1_c31110 0.45 -1.2 3,250,796 - PGA1_c31110 0.46 +0.3 3,250,807 + PGA1_c31110 0.47 +0.6 3,250,807 + PGA1_c31110 0.47 +0.3 3,250,815 - PGA1_c31110 0.48 -0.3 3,250,921 + PGA1_c31110 0.58 +0.8 3,250,929 - PGA1_c31110 0.59 +0.4 3,251,020 + PGA1_c31110 0.68 -0.1 3,251,033 - PGA1_c31110 0.69 -1.1 3,251,054 - PGA1_c31110 0.71 +1.2 3,251,089 + PGA1_c31110 0.74 -0.0 3,251,089 + PGA1_c31110 0.74 -0.6 3,251,089 + PGA1_c31110 0.74 -2.0 3,251,089 + PGA1_c31110 0.74 -0.7 3,251,092 + PGA1_c31110 0.75 -1.3 3,251,092 + PGA1_c31110 0.75 -1.3 3,251,094 + PGA1_c31110 0.75 -0.4 3,251,100 - PGA1_c31110 0.75 -0.4 3,251,115 + PGA1_c31110 0.77 -0.6 3,251,128 - PGA1_c31110 0.78 -1.2 3,251,138 + PGA1_c31110 0.79 -1.0 3,251,158 + PGA1_c31110 0.81 -0.7 3,251,207 + PGA1_c31110 0.86 -0.9 3,251,294 - -1.4 3,251,442 + PGA1_c31120 0.16 -1.1 3,251,461 - PGA1_c31120 0.20 -1.2 3,251,530 + PGA1_c31120 0.31 -0.8 3,251,530 + PGA1_c31120 0.31 -1.9 3,251,577 - PGA1_c31120 0.40 -0.1 3,251,598 - PGA1_c31120 0.43 -1.5 3,251,626 + PGA1_c31120 0.48 -2.2 3,251,688 - PGA1_c31120 0.59 -1.6 3,251,736 + PGA1_c31120 0.67 +0.4 3,251,737 + PGA1_c31120 0.67 -0.3 3,251,790 - PGA1_c31120 0.76 -0.8 3,251,795 + PGA1_c31120 0.77 -0.1 3,251,828 - PGA1_c31120 0.83 -1.4 3,251,854 - PGA1_c31120 0.87 -0.7 3,251,856 + PGA1_c31120 0.87 -1.4 3,251,886 + -2.1 3,251,886 + -0.9 3,251,886 + -1.0 3,251,894 - -0.4 3,251,937 - -0.5 3,251,950 + -0.3 3,251,961 - -0.4 3,251,961 - -2.5 3,251,963 + -1.1 3,251,987 + +0.2 3,251,995 - +0.6 3,252,041 + +0.1 3,252,041 + -0.0 3,252,051 + +0.0 3,252,054 - -1.1 3,252,059 - +1.2 3,252,059 - -0.7
Or see this region's nucleotide sequence