Strain Fitness in Marinobacter adhaerens HP15 around HP15_2987

Experiment: m.b. Sisomicin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2986 and HP15_2987 are separated by 6 nucleotidesHP15_2987 and HP15_2988 are separated by 13 nucleotidesHP15_2988 and HP15_2989 are separated by 39 nucleotidesHP15_2989 and HP15_2990 are separated by 0 nucleotides HP15_2986: HP15_2986 - FeS assembly protein SufD, at 3,129,877 to 3,131,163 _2986 HP15_2987: HP15_2987 - cysteine desulfurase, SufS subfamily, at 3,131,170 to 3,132,423 _2987 HP15_2988: HP15_2988 - FeS cluster insertion, at 3,132,437 to 3,132,790 _2988 HP15_2989: HP15_2989 - metal-sulfur cluster biosynthetic enzyme, at 3,132,830 to 3,133,372 _2989 HP15_2990: HP15_2990 - SufE protein probably involved in Fe-S center assembly, at 3,133,373 to 3,133,843 _2990 Position (kb) 3131 3132 3133Strain fitness (log2 ratio) -1 0 1at 3131.113 kb on + strandat 3131.113 kb on + strandat 3131.113 kb on + strandat 3131.113 kb on + strandat 3131.113 kb on + strandat 3132.396 kb on + strandat 3132.876 kb on + strandat 3132.918 kb on + strand, within HP15_2989at 3132.978 kb on - strand, within HP15_2989at 3132.983 kb on - strand, within HP15_2989at 3133.088 kb on + strand, within HP15_2989at 3133.301 kb on - strand, within HP15_2989at 3133.313 kb on - strand, within HP15_2989

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.004 mg/ml
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3,131,113 + +1.2
3,131,113 + +0.9
3,131,113 + +0.1
3,131,113 + +0.3
3,131,113 + +0.3
3,132,396 + +1.2
3,132,876 + -1.0
3,132,918 + HP15_2989 0.16 +0.3
3,132,978 - HP15_2989 0.27 +0.2
3,132,983 - HP15_2989 0.28 +0.3
3,133,088 + HP15_2989 0.48 -0.0
3,133,301 - HP15_2989 0.87 -0.3
3,133,313 - HP15_2989 0.89 +0.1

Or see this region's nucleotide sequence