Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c26620 and PGA1_c26630 overlap by 1 nucleotides PGA1_c26630 and PGA1_c26640 are separated by 42 nucleotides
PGA1_c26620: PGA1_c26620 - putative molybdopterin biosynthesis protein MoeB, at 2,777,368 to 2,778,504
_c26620
PGA1_c26630: PGA1_c26630 - deoxyuridine 5'-triphosphate nucleotidohydrolase Dut, at 2,778,504 to 2,778,959
_c26630
PGA1_c26640: PGA1_c26640 - coenzyme A biosynthesis bifunctional protein CoaBC, at 2,779,002 to 2,780,204
_c26640
Position (kb)
2778
2779 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2777.533 kb on + strand, within PGA1_c26620 at 2777.554 kb on + strand, within PGA1_c26620 at 2777.554 kb on + strand, within PGA1_c26620 at 2777.554 kb on + strand, within PGA1_c26620 at 2777.562 kb on - strand, within PGA1_c26620 at 2777.562 kb on - strand, within PGA1_c26620 at 2777.562 kb on - strand, within PGA1_c26620 at 2777.562 kb on - strand, within PGA1_c26620 at 2777.615 kb on - strand, within PGA1_c26620 at 2777.781 kb on + strand, within PGA1_c26620 at 2777.928 kb on + strand, within PGA1_c26620 at 2778.036 kb on + strand, within PGA1_c26620 at 2778.044 kb on - strand, within PGA1_c26620 at 2778.044 kb on - strand, within PGA1_c26620 at 2778.059 kb on - strand, within PGA1_c26620 at 2778.138 kb on + strand, within PGA1_c26620 at 2778.141 kb on - strand, within PGA1_c26620 at 2778.226 kb on - strand, within PGA1_c26620 at 2778.239 kb on - strand, within PGA1_c26620 at 2778.265 kb on - strand, within PGA1_c26620 at 2778.265 kb on - strand, within PGA1_c26620 at 2778.413 kb on + strand at 2778.449 kb on - strand at 2778.472 kb on + strand at 2778.510 kb on - strand at 2778.520 kb on - strand at 2778.598 kb on + strand, within PGA1_c26630 at 2778.606 kb on - strand, within PGA1_c26630 at 2778.606 kb on - strand, within PGA1_c26630 at 2778.662 kb on + strand, within PGA1_c26630 at 2778.775 kb on - strand, within PGA1_c26630 at 2778.775 kb on - strand, within PGA1_c26630 at 2778.775 kb on - strand, within PGA1_c26630 at 2778.810 kb on - strand, within PGA1_c26630 at 2778.833 kb on + strand, within PGA1_c26630 at 2778.835 kb on - strand, within PGA1_c26630 at 2778.869 kb on + strand, within PGA1_c26630 at 2778.911 kb on + strand, within PGA1_c26630 at 2778.911 kb on + strand, within PGA1_c26630 at 2778.932 kb on + strand at 2778.966 kb on + strand at 2778.966 kb on + strand at 2778.974 kb on - strand at 2779.008 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 2,777,533 + PGA1_c26620 0.15 +0.3 2,777,554 + PGA1_c26620 0.16 -0.1 2,777,554 + PGA1_c26620 0.16 +1.7 2,777,554 + PGA1_c26620 0.16 -0.1 2,777,562 - PGA1_c26620 0.17 +0.5 2,777,562 - PGA1_c26620 0.17 -0.4 2,777,562 - PGA1_c26620 0.17 +0.3 2,777,562 - PGA1_c26620 0.17 +0.3 2,777,615 - PGA1_c26620 0.22 -0.1 2,777,781 + PGA1_c26620 0.36 -0.6 2,777,928 + PGA1_c26620 0.49 -1.6 2,778,036 + PGA1_c26620 0.59 -0.7 2,778,044 - PGA1_c26620 0.59 +0.4 2,778,044 - PGA1_c26620 0.59 +0.9 2,778,059 - PGA1_c26620 0.61 +0.7 2,778,138 + PGA1_c26620 0.68 +0.7 2,778,141 - PGA1_c26620 0.68 -0.1 2,778,226 - PGA1_c26620 0.75 +0.9 2,778,239 - PGA1_c26620 0.77 +0.1 2,778,265 - PGA1_c26620 0.79 -0.1 2,778,265 - PGA1_c26620 0.79 +0.4 2,778,413 + -1.3 2,778,449 - -0.3 2,778,472 + -0.8 2,778,510 - -0.4 2,778,520 - -2.6 2,778,598 + PGA1_c26630 0.21 -0.2 2,778,606 - PGA1_c26630 0.22 +1.4 2,778,606 - PGA1_c26630 0.22 +0.5 2,778,662 + PGA1_c26630 0.35 +0.9 2,778,775 - PGA1_c26630 0.59 +1.0 2,778,775 - PGA1_c26630 0.59 +0.4 2,778,775 - PGA1_c26630 0.59 +0.3 2,778,810 - PGA1_c26630 0.67 +0.8 2,778,833 + PGA1_c26630 0.72 -0.1 2,778,835 - PGA1_c26630 0.73 -1.9 2,778,869 + PGA1_c26630 0.80 +0.4 2,778,911 + PGA1_c26630 0.89 +2.1 2,778,911 + PGA1_c26630 0.89 +0.7 2,778,932 + +0.4 2,778,966 + -0.0 2,778,966 + -1.0 2,778,974 - -0.4 2,779,008 - +0.4
Or see this region's nucleotide sequence