Strain Fitness in Marinobacter adhaerens HP15 around HP15_2312

Experiment: m.b. Sisomicin 0.004 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2310 and HP15_2311 are separated by 3 nucleotidesHP15_2311 and HP15_2312 are separated by 8 nucleotidesHP15_2312 and HP15_2313 are separated by 4 nucleotidesHP15_2313 and HP15_2314 are separated by 1 nucleotidesHP15_2314 and HP15_2315 overlap by 8 nucleotides HP15_2310: HP15_2310 - flagellar biosynthesis protein FliR, at 2,432,741 to 2,433,526 _2310 HP15_2311: HP15_2311 - flagellar biosynthetic protein FliQ, at 2,433,530 to 2,433,799 _2311 HP15_2312: HP15_2312 - flagellar biosynthesis protein FliP, at 2,433,808 to 2,434,584 _2312 HP15_2313: HP15_2313 - flagellar biosynthesis protein, FliO, at 2,434,589 to 2,435,038 _2313 HP15_2314: HP15_2314 - flagellar motor switch protein FliN-like protein, at 2,435,040 to 2,435,531 _2314 HP15_2315: HP15_2315 - flagellar motor switch protein FliM-like protein, at 2,435,524 to 2,436,522 _2315 Position (kb) 2433 2434 2435Strain fitness (log2 ratio) -1 0 1at 2433.022 kb on + strand, within HP15_2310at 2433.030 kb on - strand, within HP15_2310at 2433.051 kb on + strand, within HP15_2310at 2433.153 kb on - strand, within HP15_2310at 2433.153 kb on - strand, within HP15_2310at 2433.162 kb on - strand, within HP15_2310at 2433.170 kb on - strand, within HP15_2310at 2433.191 kb on + strand, within HP15_2310at 2433.199 kb on - strand, within HP15_2310at 2433.324 kb on + strand, within HP15_2310at 2433.362 kb on + strand, within HP15_2310at 2433.369 kb on + strand, within HP15_2310at 2433.385 kb on + strand, within HP15_2310at 2433.553 kb on - strandat 2433.584 kb on - strand, within HP15_2311at 2433.658 kb on - strand, within HP15_2311at 2433.690 kb on + strand, within HP15_2311at 2433.690 kb on + strand, within HP15_2311at 2433.697 kb on + strand, within HP15_2311at 2433.723 kb on - strand, within HP15_2311at 2433.758 kb on - strand, within HP15_2311at 2433.831 kb on - strandat 2433.896 kb on - strand, within HP15_2312at 2433.925 kb on - strand, within HP15_2312at 2434.012 kb on - strand, within HP15_2312at 2434.062 kb on - strand, within HP15_2312at 2434.088 kb on + strand, within HP15_2312at 2434.144 kb on + strand, within HP15_2312at 2434.167 kb on + strand, within HP15_2312at 2434.175 kb on - strand, within HP15_2312at 2434.214 kb on + strand, within HP15_2312at 2434.263 kb on + strand, within HP15_2312at 2434.270 kb on + strand, within HP15_2312at 2434.293 kb on + strand, within HP15_2312at 2434.295 kb on + strand, within HP15_2312at 2434.395 kb on - strand, within HP15_2312at 2434.427 kb on + strand, within HP15_2312at 2434.542 kb on - strandat 2434.587 kb on + strandat 2434.611 kb on + strandat 2434.611 kb on + strandat 2434.705 kb on - strand, within HP15_2313at 2434.707 kb on - strand, within HP15_2313at 2434.731 kb on - strand, within HP15_2313at 2434.763 kb on - strand, within HP15_2313at 2434.860 kb on - strand, within HP15_2313at 2434.903 kb on + strand, within HP15_2313at 2434.937 kb on - strand, within HP15_2313at 2435.084 kb on - strandat 2435.141 kb on + strand, within HP15_2314at 2435.154 kb on - strand, within HP15_2314at 2435.295 kb on + strand, within HP15_2314at 2435.314 kb on + strand, within HP15_2314at 2435.322 kb on - strand, within HP15_2314at 2435.337 kb on + strand, within HP15_2314

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.004 mg/ml
remove
2,433,022 + HP15_2310 0.36 -0.7
2,433,030 - HP15_2310 0.37 +0.7
2,433,051 + HP15_2310 0.39 +0.0
2,433,153 - HP15_2310 0.52 +0.1
2,433,153 - HP15_2310 0.52 -1.5
2,433,162 - HP15_2310 0.54 -0.0
2,433,170 - HP15_2310 0.55 +0.1
2,433,191 + HP15_2310 0.57 +1.5
2,433,199 - HP15_2310 0.58 +0.3
2,433,324 + HP15_2310 0.74 +0.2
2,433,362 + HP15_2310 0.79 +0.6
2,433,369 + HP15_2310 0.80 +0.3
2,433,385 + HP15_2310 0.82 -0.1
2,433,553 - +1.0
2,433,584 - HP15_2311 0.20 +0.1
2,433,658 - HP15_2311 0.47 +0.4
2,433,690 + HP15_2311 0.59 +0.2
2,433,690 + HP15_2311 0.59 +0.2
2,433,697 + HP15_2311 0.62 +0.8
2,433,723 - HP15_2311 0.71 +0.6
2,433,758 - HP15_2311 0.84 +0.3
2,433,831 - +0.2
2,433,896 - HP15_2312 0.11 +0.1
2,433,925 - HP15_2312 0.15 +0.2
2,434,012 - HP15_2312 0.26 -0.0
2,434,062 - HP15_2312 0.33 +0.8
2,434,088 + HP15_2312 0.36 +0.2
2,434,144 + HP15_2312 0.43 -0.1
2,434,167 + HP15_2312 0.46 +0.7
2,434,175 - HP15_2312 0.47 -0.1
2,434,214 + HP15_2312 0.52 -0.1
2,434,263 + HP15_2312 0.59 +0.6
2,434,270 + HP15_2312 0.59 +0.2
2,434,293 + HP15_2312 0.62 +0.5
2,434,295 + HP15_2312 0.63 -0.1
2,434,395 - HP15_2312 0.76 +0.6
2,434,427 + HP15_2312 0.80 +0.6
2,434,542 - +0.4
2,434,587 + +0.1
2,434,611 + +0.1
2,434,611 + -1.0
2,434,705 - HP15_2313 0.26 +0.1
2,434,707 - HP15_2313 0.26 +0.8
2,434,731 - HP15_2313 0.32 +0.2
2,434,763 - HP15_2313 0.39 +1.7
2,434,860 - HP15_2313 0.60 +0.3
2,434,903 + HP15_2313 0.70 -0.0
2,434,937 - HP15_2313 0.77 +1.1
2,435,084 - -0.0
2,435,141 + HP15_2314 0.21 +0.0
2,435,154 - HP15_2314 0.23 +0.3
2,435,295 + HP15_2314 0.52 -0.3
2,435,314 + HP15_2314 0.56 +0.3
2,435,322 - HP15_2314 0.57 -0.4
2,435,337 + HP15_2314 0.60 +0.1

Or see this region's nucleotide sequence