Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c23690 and PGA1_c23700 are separated by 269 nucleotides PGA1_c23700 and PGA1_c23710 overlap by 1 nucleotides
PGA1_c23690: PGA1_c23690 - protease do, at 2,471,578 to 2,473,092
_c23690
PGA1_c23700: PGA1_c23700 - protein HflC, at 2,473,362 to 2,474,252
_c23700
PGA1_c23710: PGA1_c23710 - putative protein HflK, at 2,474,252 to 2,475,406
_c23710
Position (kb)
2473
2474
2475 Strain fitness (log2 ratio)
-1
0
1
2 at 2472.427 kb on + strand, within PGA1_c23690 at 2472.478 kb on + strand, within PGA1_c23690 at 2472.578 kb on + strand, within PGA1_c23690 at 2472.621 kb on - strand, within PGA1_c23690 at 2472.786 kb on - strand, within PGA1_c23690 at 2472.798 kb on + strand, within PGA1_c23690 at 2472.827 kb on + strand, within PGA1_c23690 at 2472.900 kb on - strand, within PGA1_c23690 at 2473.087 kb on - strand at 2473.110 kb on - strand at 2473.110 kb on - strand at 2473.147 kb on + strand at 2473.180 kb on - strand at 2473.210 kb on + strand at 2473.216 kb on + strand at 2473.246 kb on + strand at 2473.265 kb on + strand at 2473.280 kb on - strand at 2473.304 kb on - strand at 2473.304 kb on - strand at 2473.310 kb on - strand at 2473.317 kb on - strand at 2473.368 kb on - strand at 2473.439 kb on + strand at 2473.449 kb on + strand at 2473.575 kb on - strand, within PGA1_c23700 at 2473.690 kb on + strand, within PGA1_c23700 at 2473.922 kb on - strand, within PGA1_c23700 at 2474.091 kb on - strand, within PGA1_c23700 at 2474.208 kb on - strand at 2474.212 kb on + strand at 2474.232 kb on + strand at 2474.271 kb on - strand at 2474.311 kb on - strand at 2474.351 kb on + strand at 2474.473 kb on - strand, within PGA1_c23710 at 2474.484 kb on - strand, within PGA1_c23710 at 2474.912 kb on - strand, within PGA1_c23710 at 2474.917 kb on + strand, within PGA1_c23710 at 2474.965 kb on + strand, within PGA1_c23710 at 2474.973 kb on - strand, within PGA1_c23710 at 2474.973 kb on - strand, within PGA1_c23710 at 2474.973 kb on - strand, within PGA1_c23710
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 2,472,427 + PGA1_c23690 0.56 +0.6 2,472,478 + PGA1_c23690 0.59 +1.0 2,472,578 + PGA1_c23690 0.66 +1.4 2,472,621 - PGA1_c23690 0.69 +0.8 2,472,786 - PGA1_c23690 0.80 -0.3 2,472,798 + PGA1_c23690 0.81 +2.0 2,472,827 + PGA1_c23690 0.82 +0.6 2,472,900 - PGA1_c23690 0.87 +0.9 2,473,087 - +0.7 2,473,110 - +0.6 2,473,110 - +0.8 2,473,147 + +0.1 2,473,180 - -0.3 2,473,210 + -0.4 2,473,216 + -0.5 2,473,246 + +0.6 2,473,265 + +0.4 2,473,280 - -1.1 2,473,304 - -0.6 2,473,304 - +0.0 2,473,310 - +0.7 2,473,317 - +0.1 2,473,368 - +0.3 2,473,439 + +0.8 2,473,449 + +1.8 2,473,575 - PGA1_c23700 0.24 +1.1 2,473,690 + PGA1_c23700 0.37 +0.8 2,473,922 - PGA1_c23700 0.63 +1.0 2,474,091 - PGA1_c23700 0.82 +0.1 2,474,208 - +1.4 2,474,212 + +0.5 2,474,232 + +0.6 2,474,271 - +0.2 2,474,311 - +0.8 2,474,351 + +0.8 2,474,473 - PGA1_c23710 0.19 +1.1 2,474,484 - PGA1_c23710 0.20 +1.9 2,474,912 - PGA1_c23710 0.57 +1.5 2,474,917 + PGA1_c23710 0.58 +1.6 2,474,965 + PGA1_c23710 0.62 -1.0 2,474,973 - PGA1_c23710 0.62 +1.5 2,474,973 - PGA1_c23710 0.62 +1.6 2,474,973 - PGA1_c23710 0.62 +1.8
Or see this region's nucleotide sequence