Strain Fitness in Marinobacter adhaerens HP15 around HP15_22

Experiment: m.b. Sisomicin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_21 and HP15_22 are separated by 76 nucleotidesHP15_22 and HP15_23 are separated by 244 nucleotides HP15_21: HP15_21 - dioxygenase DitA oxygenase component large subunit, at 23,708 to 25,102 _21 HP15_22: HP15_22 - aromatic-ring-hydroxylating dioxygenase beta subunit, at 25,179 to 25,754 _22 HP15_23: HP15_23 - conserved hypothetical protein, at 25,999 to 27,033 _23 Position (kb) 25 26Strain fitness (log2 ratio) -2 -1 0 1at 24.181 kb on - strand, within HP15_21at 24.228 kb on - strand, within HP15_21at 24.252 kb on + strand, within HP15_21at 24.260 kb on - strand, within HP15_21at 24.275 kb on - strand, within HP15_21at 24.296 kb on + strand, within HP15_21at 24.296 kb on + strand, within HP15_21at 24.303 kb on + strand, within HP15_21at 24.311 kb on - strand, within HP15_21at 24.311 kb on - strand, within HP15_21at 24.366 kb on + strand, within HP15_21at 24.366 kb on + strand, within HP15_21at 24.366 kb on + strand, within HP15_21at 24.373 kb on - strand, within HP15_21at 24.455 kb on - strand, within HP15_21at 24.462 kb on + strand, within HP15_21at 24.462 kb on + strand, within HP15_21at 24.469 kb on + strand, within HP15_21at 24.470 kb on - strand, within HP15_21at 24.470 kb on - strand, within HP15_21at 24.477 kb on - strand, within HP15_21at 24.499 kb on - strand, within HP15_21at 24.501 kb on + strand, within HP15_21at 24.501 kb on + strand, within HP15_21at 24.501 kb on + strand, within HP15_21at 24.501 kb on + strand, within HP15_21at 24.509 kb on - strand, within HP15_21at 24.509 kb on - strand, within HP15_21at 24.509 kb on - strand, within HP15_21at 24.509 kb on - strand, within HP15_21at 24.509 kb on - strand, within HP15_21at 24.509 kb on - strand, within HP15_21at 24.509 kb on - strand, within HP15_21at 24.509 kb on - strand, within HP15_21at 24.607 kb on - strand, within HP15_21at 24.668 kb on - strand, within HP15_21at 24.669 kb on + strand, within HP15_21at 24.677 kb on - strand, within HP15_21at 24.678 kb on - strand, within HP15_21at 24.743 kb on + strand, within HP15_21at 24.743 kb on - strand, within HP15_21at 24.747 kb on + strand, within HP15_21at 24.789 kb on + strand, within HP15_21at 24.890 kb on - strand, within HP15_21at 24.901 kb on + strand, within HP15_21at 24.901 kb on + strand, within HP15_21at 24.913 kb on + strand, within HP15_21at 24.961 kb on - strand, within HP15_21at 24.999 kb on - strandat 25.080 kb on + strandat 25.097 kb on + strandat 25.097 kb on + strandat 25.105 kb on - strandat 25.105 kb on - strandat 25.105 kb on - strandat 25.107 kb on + strandat 25.161 kb on + strandat 25.199 kb on + strandat 25.200 kb on + strandat 25.210 kb on + strandat 25.225 kb on - strandat 25.302 kb on - strand, within HP15_22at 25.373 kb on + strand, within HP15_22at 25.400 kb on + strand, within HP15_22at 25.400 kb on + strand, within HP15_22at 25.412 kb on + strand, within HP15_22at 25.420 kb on - strand, within HP15_22at 25.441 kb on + strand, within HP15_22at 25.466 kb on - strand, within HP15_22at 25.578 kb on + strand, within HP15_22at 25.608 kb on - strand, within HP15_22at 25.642 kb on - strand, within HP15_22at 25.651 kb on + strand, within HP15_22at 25.664 kb on - strand, within HP15_22at 25.776 kb on - strandat 25.788 kb on + strandat 25.821 kb on - strandat 25.821 kb on - strandat 25.893 kb on + strandat 25.906 kb on + strandat 25.962 kb on + strandat 25.970 kb on - strandat 25.972 kb on - strandat 26.015 kb on - strandat 26.073 kb on + strandat 26.081 kb on - strandat 26.081 kb on - strandat 26.081 kb on - strandat 26.086 kb on - strandat 26.162 kb on + strand, within HP15_23at 26.170 kb on - strand, within HP15_23at 26.170 kb on - strand, within HP15_23at 26.198 kb on - strand, within HP15_23at 26.200 kb on + strand, within HP15_23at 26.200 kb on + strand, within HP15_23at 26.208 kb on - strand, within HP15_23at 26.265 kb on - strand, within HP15_23at 26.281 kb on + strand, within HP15_23at 26.334 kb on + strand, within HP15_23at 26.342 kb on - strand, within HP15_23at 26.365 kb on + strand, within HP15_23at 26.373 kb on - strand, within HP15_23at 26.436 kb on + strand, within HP15_23at 26.464 kb on - strand, within HP15_23at 26.464 kb on - strand, within HP15_23at 26.572 kb on + strand, within HP15_23at 26.574 kb on + strand, within HP15_23at 26.580 kb on - strand, within HP15_23at 26.585 kb on + strand, within HP15_23at 26.666 kb on + strand, within HP15_23at 26.734 kb on - strand, within HP15_23at 26.748 kb on - strand, within HP15_23

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.004 mg/ml
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24,181 - HP15_21 0.34 +0.8
24,228 - HP15_21 0.37 -0.6
24,252 + HP15_21 0.39 -0.6
24,260 - HP15_21 0.40 +0.6
24,275 - HP15_21 0.41 -0.1
24,296 + HP15_21 0.42 +0.1
24,296 + HP15_21 0.42 +0.9
24,303 + HP15_21 0.43 -0.0
24,311 - HP15_21 0.43 +0.1
24,311 - HP15_21 0.43 +0.5
24,366 + HP15_21 0.47 -0.1
24,366 + HP15_21 0.47 -0.7
24,366 + HP15_21 0.47 -0.7
24,373 - HP15_21 0.48 -0.0
24,455 - HP15_21 0.54 -0.1
24,462 + HP15_21 0.54 +0.4
24,462 + HP15_21 0.54 +0.6
24,469 + HP15_21 0.55 -0.1
24,470 - HP15_21 0.55 -0.3
24,470 - HP15_21 0.55 +0.3
24,477 - HP15_21 0.55 +0.4
24,499 - HP15_21 0.57 -0.3
24,501 + HP15_21 0.57 -0.0
24,501 + HP15_21 0.57 +0.4
24,501 + HP15_21 0.57 +0.5
24,501 + HP15_21 0.57 +0.0
24,509 - HP15_21 0.57 -0.1
24,509 - HP15_21 0.57 +0.0
24,509 - HP15_21 0.57 +0.2
24,509 - HP15_21 0.57 +0.6
24,509 - HP15_21 0.57 +0.2
24,509 - HP15_21 0.57 +0.1
24,509 - HP15_21 0.57 -0.7
24,509 - HP15_21 0.57 +0.1
24,607 - HP15_21 0.64 +0.3
24,668 - HP15_21 0.69 +0.2
24,669 + HP15_21 0.69 +0.0
24,677 - HP15_21 0.69 +0.3
24,678 - HP15_21 0.70 +0.6
24,743 + HP15_21 0.74 +0.2
24,743 - HP15_21 0.74 -0.3
24,747 + HP15_21 0.74 +0.3
24,789 + HP15_21 0.77 -0.7
24,890 - HP15_21 0.85 -0.7
24,901 + HP15_21 0.86 +0.6
24,901 + HP15_21 0.86 -0.4
24,913 + HP15_21 0.86 +0.2
24,961 - HP15_21 0.90 -0.5
24,999 - -0.6
25,080 + -0.2
25,097 + -2.3
25,097 + +0.1
25,105 - +1.3
25,105 - -0.1
25,105 - -0.5
25,107 + -0.1
25,161 + +0.8
25,199 + -0.2
25,200 + -0.3
25,210 + +0.0
25,225 - +0.1
25,302 - HP15_22 0.21 -0.9
25,373 + HP15_22 0.34 -0.4
25,400 + HP15_22 0.38 -0.5
25,400 + HP15_22 0.38 +0.1
25,412 + HP15_22 0.40 -0.3
25,420 - HP15_22 0.42 +0.2
25,441 + HP15_22 0.45 -0.2
25,466 - HP15_22 0.50 +0.6
25,578 + HP15_22 0.69 +0.2
25,608 - HP15_22 0.74 -0.1
25,642 - HP15_22 0.80 +0.5
25,651 + HP15_22 0.82 -1.3
25,664 - HP15_22 0.84 -0.1
25,776 - -0.1
25,788 + +0.0
25,821 - -0.1
25,821 - +0.2
25,893 + +0.1
25,906 + +0.0
25,962 + +0.0
25,970 - +1.1
25,972 - -0.5
26,015 - -0.2
26,073 + -0.4
26,081 - +0.0
26,081 - -0.1
26,081 - -0.1
26,086 - +0.8
26,162 + HP15_23 0.16 -0.3
26,170 - HP15_23 0.17 -0.3
26,170 - HP15_23 0.17 +0.2
26,198 - HP15_23 0.19 -0.4
26,200 + HP15_23 0.19 +0.3
26,200 + HP15_23 0.19 -0.2
26,208 - HP15_23 0.20 +0.2
26,265 - HP15_23 0.26 +0.6
26,281 + HP15_23 0.27 -0.4
26,334 + HP15_23 0.32 -0.0
26,342 - HP15_23 0.33 +0.3
26,365 + HP15_23 0.35 -0.5
26,373 - HP15_23 0.36 +0.3
26,436 + HP15_23 0.42 -0.2
26,464 - HP15_23 0.45 -0.0
26,464 - HP15_23 0.45 -0.4
26,572 + HP15_23 0.55 +0.1
26,574 + HP15_23 0.56 +0.4
26,580 - HP15_23 0.56 -1.1
26,585 + HP15_23 0.57 +0.2
26,666 + HP15_23 0.64 +0.3
26,734 - HP15_23 0.71 -0.4
26,748 - HP15_23 0.72 -0.1

Or see this region's nucleotide sequence