Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c02170

Experiment: m.b. Fusidic 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c02140 and PGA1_c02150 are separated by 26 nucleotidesPGA1_c02150 and PGA1_c02170 are separated by 398 nucleotidesPGA1_c02170 and PGA1_c02180 are separated by 2 nucleotides PGA1_c02140: PGA1_c02140 - putative ribonuclease P component, at 196,521 to 196,973 _c02140 PGA1_c02150: PGA1_c02150 - 50S ribosomal protein L34, at 197,000 to 197,134 _c02150 PGA1_c02170: PGA1_c02170 - Uncharacterized conserved protein, at 197,533 to 198,336 _c02170 PGA1_c02180: PGA1_c02180 - dihydrolipoyl dehydrogenase LpdA, at 198,339 to 199,760 _c02180 Position (kb) 197 198 199Strain fitness (log2 ratio) -2 -1 0 1at 196.977 kb on + strandat 197.335 kb on + strandat 197.368 kb on + strandat 197.370 kb on - strandat 197.376 kb on - strandat 197.412 kb on - strandat 197.470 kb on - strandat 197.486 kb on + strandat 197.486 kb on + strandat 197.486 kb on + strandat 197.501 kb on + strandat 197.507 kb on + strandat 197.509 kb on - strandat 197.515 kb on - strandat 197.621 kb on + strand, within PGA1_c02170at 197.621 kb on + strand, within PGA1_c02170at 197.629 kb on - strand, within PGA1_c02170at 197.629 kb on - strand, within PGA1_c02170at 197.629 kb on - strand, within PGA1_c02170at 197.681 kb on + strand, within PGA1_c02170at 197.687 kb on + strand, within PGA1_c02170at 197.771 kb on + strand, within PGA1_c02170at 197.785 kb on + strand, within PGA1_c02170at 197.785 kb on + strand, within PGA1_c02170at 197.790 kb on + strand, within PGA1_c02170at 197.790 kb on + strand, within PGA1_c02170at 197.790 kb on + strand, within PGA1_c02170at 197.790 kb on + strand, within PGA1_c02170at 197.790 kb on + strand, within PGA1_c02170at 197.792 kb on + strand, within PGA1_c02170at 197.793 kb on - strand, within PGA1_c02170at 197.867 kb on - strand, within PGA1_c02170at 197.867 kb on - strand, within PGA1_c02170at 197.942 kb on + strand, within PGA1_c02170at 198.056 kb on - strand, within PGA1_c02170at 198.096 kb on + strand, within PGA1_c02170at 198.096 kb on + strand, within PGA1_c02170at 198.104 kb on - strand, within PGA1_c02170at 198.109 kb on - strand, within PGA1_c02170at 198.109 kb on - strand, within PGA1_c02170at 198.128 kb on - strand, within PGA1_c02170at 198.168 kb on - strand, within PGA1_c02170at 198.193 kb on + strand, within PGA1_c02170at 198.201 kb on - strand, within PGA1_c02170at 198.204 kb on + strand, within PGA1_c02170at 198.220 kb on - strand, within PGA1_c02170at 198.437 kb on + strandat 198.444 kb on + strandat 198.445 kb on - strandat 198.447 kb on + strandat 198.520 kb on + strand, within PGA1_c02180at 198.525 kb on + strand, within PGA1_c02180at 198.525 kb on + strand, within PGA1_c02180at 198.525 kb on + strand, within PGA1_c02180at 198.533 kb on - strand, within PGA1_c02180at 198.538 kb on - strand, within PGA1_c02180at 198.544 kb on - strand, within PGA1_c02180at 198.558 kb on + strand, within PGA1_c02180at 198.583 kb on - strand, within PGA1_c02180at 198.601 kb on - strand, within PGA1_c02180at 198.619 kb on + strand, within PGA1_c02180at 198.635 kb on - strand, within PGA1_c02180at 198.638 kb on - strand, within PGA1_c02180at 198.663 kb on - strand, within PGA1_c02180at 198.679 kb on + strand, within PGA1_c02180at 198.725 kb on + strand, within PGA1_c02180at 198.725 kb on + strand, within PGA1_c02180at 198.817 kb on + strand, within PGA1_c02180at 198.834 kb on - strand, within PGA1_c02180at 198.834 kb on - strand, within PGA1_c02180at 198.908 kb on - strand, within PGA1_c02180at 198.909 kb on - strand, within PGA1_c02180at 198.916 kb on + strand, within PGA1_c02180at 198.953 kb on + strand, within PGA1_c02180at 198.953 kb on + strand, within PGA1_c02180at 199.034 kb on + strand, within PGA1_c02180at 199.034 kb on + strand, within PGA1_c02180at 199.042 kb on - strand, within PGA1_c02180at 199.058 kb on + strand, within PGA1_c02180at 199.108 kb on + strand, within PGA1_c02180at 199.123 kb on - strand, within PGA1_c02180at 199.158 kb on - strand, within PGA1_c02180at 199.191 kb on + strand, within PGA1_c02180at 199.192 kb on + strand, within PGA1_c02180at 199.199 kb on - strand, within PGA1_c02180at 199.240 kb on - strand, within PGA1_c02180at 199.266 kb on + strand, within PGA1_c02180at 199.299 kb on + strand, within PGA1_c02180

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
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196,977 + -1.5
197,335 + -0.6
197,368 + +0.2
197,370 - +0.7
197,376 - +0.7
197,412 - -1.0
197,470 - -0.0
197,486 + -0.8
197,486 + +0.3
197,486 + +0.4
197,501 + +0.6
197,507 + -1.5
197,509 - +0.5
197,515 - -0.6
197,621 + PGA1_c02170 0.11 +0.9
197,621 + PGA1_c02170 0.11 +0.3
197,629 - PGA1_c02170 0.12 -0.7
197,629 - PGA1_c02170 0.12 -1.1
197,629 - PGA1_c02170 0.12 -0.1
197,681 + PGA1_c02170 0.18 -0.2
197,687 + PGA1_c02170 0.19 +0.7
197,771 + PGA1_c02170 0.30 -0.3
197,785 + PGA1_c02170 0.31 -0.7
197,785 + PGA1_c02170 0.31 +0.1
197,790 + PGA1_c02170 0.32 +0.1
197,790 + PGA1_c02170 0.32 -0.8
197,790 + PGA1_c02170 0.32 +0.1
197,790 + PGA1_c02170 0.32 -0.6
197,790 + PGA1_c02170 0.32 -0.4
197,792 + PGA1_c02170 0.32 +0.0
197,793 - PGA1_c02170 0.32 -0.3
197,867 - PGA1_c02170 0.42 +0.0
197,867 - PGA1_c02170 0.42 +0.6
197,942 + PGA1_c02170 0.51 +0.3
198,056 - PGA1_c02170 0.65 -1.2
198,096 + PGA1_c02170 0.70 -2.3
198,096 + PGA1_c02170 0.70 -0.1
198,104 - PGA1_c02170 0.71 +0.1
198,109 - PGA1_c02170 0.72 -1.3
198,109 - PGA1_c02170 0.72 +0.6
198,128 - PGA1_c02170 0.74 -0.0
198,168 - PGA1_c02170 0.79 +0.2
198,193 + PGA1_c02170 0.82 +0.0
198,201 - PGA1_c02170 0.83 -1.1
198,204 + PGA1_c02170 0.83 -0.0
198,220 - PGA1_c02170 0.85 -0.4
198,437 + -0.7
198,444 + +0.3
198,445 - -0.5
198,447 + +0.2
198,520 + PGA1_c02180 0.13 -0.7
198,525 + PGA1_c02180 0.13 +1.2
198,525 + PGA1_c02180 0.13 -0.0
198,525 + PGA1_c02180 0.13 +0.5
198,533 - PGA1_c02180 0.14 +0.2
198,538 - PGA1_c02180 0.14 -0.3
198,544 - PGA1_c02180 0.14 -0.8
198,558 + PGA1_c02180 0.15 +0.0
198,583 - PGA1_c02180 0.17 +0.1
198,601 - PGA1_c02180 0.18 -0.3
198,619 + PGA1_c02180 0.20 -0.6
198,635 - PGA1_c02180 0.21 -0.7
198,638 - PGA1_c02180 0.21 +0.8
198,663 - PGA1_c02180 0.23 +0.8
198,679 + PGA1_c02180 0.24 -0.0
198,725 + PGA1_c02180 0.27 +1.2
198,725 + PGA1_c02180 0.27 +0.1
198,817 + PGA1_c02180 0.34 +0.3
198,834 - PGA1_c02180 0.35 +0.3
198,834 - PGA1_c02180 0.35 +0.2
198,908 - PGA1_c02180 0.40 +1.2
198,909 - PGA1_c02180 0.40 -2.2
198,916 + PGA1_c02180 0.41 -0.8
198,953 + PGA1_c02180 0.43 +0.2
198,953 + PGA1_c02180 0.43 +0.4
199,034 + PGA1_c02180 0.49 -0.0
199,034 + PGA1_c02180 0.49 +0.6
199,042 - PGA1_c02180 0.49 -0.4
199,058 + PGA1_c02180 0.51 +0.6
199,108 + PGA1_c02180 0.54 -0.4
199,123 - PGA1_c02180 0.55 -1.1
199,158 - PGA1_c02180 0.58 +0.3
199,191 + PGA1_c02180 0.60 +0.6
199,192 + PGA1_c02180 0.60 -0.2
199,199 - PGA1_c02180 0.60 -0.1
199,240 - PGA1_c02180 0.63 -0.6
199,266 + PGA1_c02180 0.65 +0.5
199,299 + PGA1_c02180 0.68 +0.0

Or see this region's nucleotide sequence