Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c20650

Experiment: m.b. Fusidic 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c20630 and PGA1_c20640 are separated by 68 nucleotidesPGA1_c20640 and PGA1_c20650 are separated by 263 nucleotidesPGA1_c20650 and PGA1_c20660 are separated by 200 nucleotides PGA1_c20630: PGA1_c20630 - glycerophosphoryl diester phosphodiesterase-like protein, at 2,138,152 to 2,139,411 _c20630 PGA1_c20640: PGA1_c20640 - iron-binding protein IscA, at 2,139,480 to 2,139,839 _c20640 PGA1_c20650: PGA1_c20650 - triosephosphate isomerase TpiA, at 2,140,103 to 2,140,855 _c20650 PGA1_c20660: PGA1_c20660 - TRAP transporter for fumarate, succinate, L-malate, and 2-oxogulatarate, large permease component (from data), at 2,141,056 to 2,142,459 _c20660 Position (kb) 2140 2141Strain fitness (log2 ratio) -2 -1 0 1at 2139.154 kb on - strand, within PGA1_c20630at 2139.166 kb on - strand, within PGA1_c20630at 2139.224 kb on + strand, within PGA1_c20630at 2139.308 kb on + strandat 2139.308 kb on + strandat 2139.308 kb on + strandat 2139.308 kb on + strandat 2139.308 kb on + strandat 2139.316 kb on - strandat 2139.316 kb on - strandat 2139.336 kb on + strandat 2139.338 kb on - strandat 2139.344 kb on - strandat 2139.346 kb on - strandat 2139.376 kb on + strandat 2139.376 kb on + strandat 2139.376 kb on + strandat 2139.412 kb on + strandat 2139.420 kb on + strandat 2139.420 kb on + strandat 2139.427 kb on - strandat 2139.428 kb on - strandat 2139.428 kb on - strandat 2139.455 kb on + strandat 2139.467 kb on + strandat 2139.864 kb on - strandat 2139.969 kb on + strandat 2139.977 kb on - strandat 2139.995 kb on + strandat 2140.010 kb on + strandat 2140.061 kb on + strandat 2140.069 kb on - strandat 2140.092 kb on - strandat 2140.863 kb on + strandat 2140.915 kb on - strandat 2141.102 kb on + strandat 2141.102 kb on + strandat 2141.115 kb on + strandat 2141.115 kb on + strandat 2141.154 kb on - strandat 2141.213 kb on - strand, within PGA1_c20660at 2141.224 kb on + strand, within PGA1_c20660at 2141.231 kb on - strand, within PGA1_c20660at 2141.286 kb on + strand, within PGA1_c20660at 2141.429 kb on - strand, within PGA1_c20660at 2141.586 kb on + strand, within PGA1_c20660at 2141.721 kb on - strand, within PGA1_c20660

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
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2,139,154 - PGA1_c20630 0.80 +0.2
2,139,166 - PGA1_c20630 0.80 +0.9
2,139,224 + PGA1_c20630 0.85 -0.5
2,139,308 + -0.2
2,139,308 + +0.4
2,139,308 + +1.6
2,139,308 + +0.3
2,139,308 + -0.4
2,139,316 - +0.0
2,139,316 - -0.2
2,139,336 + -1.4
2,139,338 - -1.0
2,139,344 - +0.6
2,139,346 - +0.5
2,139,376 + -0.2
2,139,376 + +0.5
2,139,376 + -0.5
2,139,412 + -0.2
2,139,420 + -1.2
2,139,420 + +0.2
2,139,427 - +0.4
2,139,428 - +0.6
2,139,428 - -0.3
2,139,455 + +0.5
2,139,467 + -1.5
2,139,864 - +1.1
2,139,969 + +0.2
2,139,977 - -0.1
2,139,995 + -0.2
2,140,010 + -2.0
2,140,061 + -0.8
2,140,069 - -0.8
2,140,092 - +0.4
2,140,863 + -0.3
2,140,915 - +0.6
2,141,102 + +0.2
2,141,102 + +0.3
2,141,115 + +0.9
2,141,115 + -0.3
2,141,154 - +1.0
2,141,213 - PGA1_c20660 0.11 +0.2
2,141,224 + PGA1_c20660 0.12 +0.9
2,141,231 - PGA1_c20660 0.12 +1.0
2,141,286 + PGA1_c20660 0.16 +0.6
2,141,429 - PGA1_c20660 0.27 -0.3
2,141,586 + PGA1_c20660 0.38 -2.2
2,141,721 - PGA1_c20660 0.47 -0.8

Or see this region's nucleotide sequence