Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c19710 and PGA1_c19720 are separated by 239 nucleotides PGA1_c19720 and PGA1_c19730 are separated by 69 nucleotides PGA1_c19730 and PGA1_c19740 overlap by 8 nucleotides PGA1_c19740 and PGA1_c19750 are separated by 104 nucleotides
PGA1_c19710: PGA1_c19710 - alginate biosynthesis protein algA-like protein, at 2,046,280 to 2,047,629
_c19710
PGA1_c19720: PGA1_c19720 - TfoX C-terminal domain., at 2,047,869 to 2,048,198
_c19720
PGA1_c19730: PGA1_c19730 - Uncharacterized homolog of Blt101, at 2,048,268 to 2,048,438
_c19730
PGA1_c19740: PGA1_c19740 - hypothetical protein, at 2,048,431 to 2,048,955
_c19740
PGA1_c19750: PGA1_c19750 - nucleoside diphosphate kinase Ndk, at 2,049,060 to 2,049,482
_c19750
Position (kb)
2048
2049 Strain fitness (log2 ratio)
-2
-1
0
1 at 2047.320 kb on - strand, within PGA1_c19710 at 2047.320 kb on - strand, within PGA1_c19710 at 2047.320 kb on - strand, within PGA1_c19710 at 2047.320 kb on - strand, within PGA1_c19710 at 2047.348 kb on + strand, within PGA1_c19710 at 2047.356 kb on - strand, within PGA1_c19710 at 2047.368 kb on - strand, within PGA1_c19710 at 2047.384 kb on + strand, within PGA1_c19710 at 2047.415 kb on - strand, within PGA1_c19710 at 2047.424 kb on + strand, within PGA1_c19710 at 2047.438 kb on + strand, within PGA1_c19710 at 2047.465 kb on + strand, within PGA1_c19710 at 2047.479 kb on - strand, within PGA1_c19710 at 2047.517 kb on + strand at 2047.564 kb on + strand at 2047.569 kb on + strand at 2047.569 kb on + strand at 2047.577 kb on - strand at 2047.579 kb on + strand at 2047.632 kb on - strand at 2047.638 kb on - strand at 2047.652 kb on - strand at 2047.652 kb on - strand at 2047.658 kb on + strand at 2047.658 kb on + strand at 2047.658 kb on + strand at 2047.658 kb on + strand at 2047.666 kb on - strand at 2047.666 kb on - strand at 2047.672 kb on - strand at 2047.676 kb on - strand at 2047.677 kb on - strand at 2047.719 kb on + strand at 2047.727 kb on - strand at 2047.727 kb on - strand at 2047.753 kb on + strand at 2047.759 kb on + strand at 2047.761 kb on - strand at 2047.769 kb on + strand at 2047.769 kb on + strand at 2047.769 kb on + strand at 2047.771 kb on - strand at 2047.777 kb on - strand at 2047.777 kb on - strand at 2047.777 kb on - strand at 2047.833 kb on + strand at 2047.900 kb on - strand at 2047.917 kb on - strand, within PGA1_c19720 at 2047.932 kb on - strand, within PGA1_c19720 at 2047.932 kb on - strand, within PGA1_c19720 at 2047.932 kb on - strand, within PGA1_c19720 at 2047.932 kb on - strand, within PGA1_c19720 at 2047.932 kb on - strand, within PGA1_c19720 at 2047.932 kb on - strand, within PGA1_c19720 at 2047.932 kb on - strand, within PGA1_c19720 at 2047.932 kb on - strand, within PGA1_c19720 at 2047.943 kb on - strand, within PGA1_c19720 at 2047.969 kb on + strand, within PGA1_c19720 at 2047.980 kb on + strand, within PGA1_c19720 at 2047.980 kb on + strand, within PGA1_c19720 at 2047.980 kb on + strand, within PGA1_c19720 at 2047.984 kb on + strand, within PGA1_c19720 at 2047.984 kb on + strand, within PGA1_c19720 at 2047.988 kb on - strand, within PGA1_c19720 at 2047.988 kb on - strand, within PGA1_c19720 at 2048.002 kb on - strand, within PGA1_c19720 at 2048.047 kb on - strand, within PGA1_c19720 at 2048.149 kb on - strand, within PGA1_c19720 at 2048.164 kb on + strand, within PGA1_c19720 at 2048.174 kb on + strand at 2048.182 kb on - strand at 2048.208 kb on - strand at 2048.211 kb on + strand at 2048.250 kb on + strand at 2048.252 kb on + strand at 2048.262 kb on + strand at 2048.265 kb on + strand at 2048.331 kb on + strand, within PGA1_c19730 at 2048.331 kb on + strand at 2048.336 kb on + strand, within PGA1_c19730 at 2048.363 kb on + strand, within PGA1_c19730 at 2048.385 kb on - strand, within PGA1_c19730 at 2048.403 kb on + strand, within PGA1_c19730 at 2048.403 kb on + strand, within PGA1_c19730 at 2048.440 kb on + strand at 2048.491 kb on + strand, within PGA1_c19740 at 2048.492 kb on + strand, within PGA1_c19740 at 2048.690 kb on + strand, within PGA1_c19740 at 2048.693 kb on - strand, within PGA1_c19740 at 2048.732 kb on + strand, within PGA1_c19740 at 2048.740 kb on - strand, within PGA1_c19740 at 2048.824 kb on - strand, within PGA1_c19740 at 2048.870 kb on + strand, within PGA1_c19740
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 2,047,320 - PGA1_c19710 0.77 -0.6 2,047,320 - PGA1_c19710 0.77 -0.2 2,047,320 - PGA1_c19710 0.77 -0.0 2,047,320 - PGA1_c19710 0.77 +0.5 2,047,348 + PGA1_c19710 0.79 +0.4 2,047,356 - PGA1_c19710 0.80 -0.4 2,047,368 - PGA1_c19710 0.81 +0.0 2,047,384 + PGA1_c19710 0.82 -0.1 2,047,415 - PGA1_c19710 0.84 -0.1 2,047,424 + PGA1_c19710 0.85 -0.1 2,047,438 + PGA1_c19710 0.86 +0.6 2,047,465 + PGA1_c19710 0.88 -0.1 2,047,479 - PGA1_c19710 0.89 -1.0 2,047,517 + -0.6 2,047,564 + -0.9 2,047,569 + +0.1 2,047,569 + -0.1 2,047,577 - -0.5 2,047,579 + -0.0 2,047,632 - +0.0 2,047,638 - +0.8 2,047,652 - -0.1 2,047,652 - -1.5 2,047,658 + +0.6 2,047,658 + -0.0 2,047,658 + -0.6 2,047,658 + +0.9 2,047,666 - +0.1 2,047,666 - +0.1 2,047,672 - -1.0 2,047,676 - -0.9 2,047,677 - +0.8 2,047,719 + -0.6 2,047,727 - -0.2 2,047,727 - +0.8 2,047,753 + +0.1 2,047,759 + -1.2 2,047,761 - +0.1 2,047,769 + +1.6 2,047,769 + +1.0 2,047,769 + -0.2 2,047,771 - -0.1 2,047,777 - +0.3 2,047,777 - +0.8 2,047,777 - -0.6 2,047,833 + +0.3 2,047,900 - -0.2 2,047,917 - PGA1_c19720 0.15 -0.8 2,047,932 - PGA1_c19720 0.19 +0.1 2,047,932 - PGA1_c19720 0.19 +0.3 2,047,932 - PGA1_c19720 0.19 +0.1 2,047,932 - PGA1_c19720 0.19 -1.4 2,047,932 - PGA1_c19720 0.19 +0.3 2,047,932 - PGA1_c19720 0.19 +0.4 2,047,932 - PGA1_c19720 0.19 -0.4 2,047,932 - PGA1_c19720 0.19 +0.7 2,047,943 - PGA1_c19720 0.22 -1.8 2,047,969 + PGA1_c19720 0.30 -0.3 2,047,980 + PGA1_c19720 0.34 -0.3 2,047,980 + PGA1_c19720 0.34 -0.0 2,047,980 + PGA1_c19720 0.34 -0.3 2,047,984 + PGA1_c19720 0.35 -0.8 2,047,984 + PGA1_c19720 0.35 -0.8 2,047,988 - PGA1_c19720 0.36 -0.5 2,047,988 - PGA1_c19720 0.36 -0.3 2,048,002 - PGA1_c19720 0.40 +0.1 2,048,047 - PGA1_c19720 0.54 -0.9 2,048,149 - PGA1_c19720 0.85 +0.5 2,048,164 + PGA1_c19720 0.89 -0.0 2,048,174 + -0.5 2,048,182 - -0.0 2,048,208 - +0.2 2,048,211 + +0.2 2,048,250 + +0.2 2,048,252 + -0.5 2,048,262 + -0.4 2,048,265 + +0.6 2,048,331 + PGA1_c19730 0.37 +0.3 2,048,331 + +0.0 2,048,336 + PGA1_c19730 0.40 +0.6 2,048,363 + PGA1_c19730 0.56 -0.7 2,048,385 - PGA1_c19730 0.68 -1.3 2,048,403 + PGA1_c19730 0.79 -1.2 2,048,403 + PGA1_c19730 0.79 -0.4 2,048,440 + +0.5 2,048,491 + PGA1_c19740 0.11 +0.3 2,048,492 + PGA1_c19740 0.12 -0.7 2,048,690 + PGA1_c19740 0.49 +0.1 2,048,693 - PGA1_c19740 0.50 +0.2 2,048,732 + PGA1_c19740 0.57 +0.6 2,048,740 - PGA1_c19740 0.59 +0.4 2,048,824 - PGA1_c19740 0.75 -0.1 2,048,870 + PGA1_c19740 0.84 -0.3
Or see this region's nucleotide sequence