Experiment: m.b. Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1864 and HP15_1865 are separated by 194 nucleotides HP15_1865 and HP15_1866 are separated by 47 nucleotides HP15_1866 and HP15_1867 are separated by 88 nucleotides HP15_1867 and HP15_1868 are separated by 44 nucleotides
HP15_1864: HP15_1864 - acyl-CoA synthase, at 1,969,999 to 1,971,681
_1864
HP15_1865: HP15_1865 - MaoC domain protein dehydratase, at 1,971,876 to 1,972,361
_1865
HP15_1866: HP15_1866 - conserved hypothetical protein, at 1,972,409 to 1,973,308
_1866
HP15_1867: HP15_1867 - biopolymer transport protein, at 1,973,397 to 1,973,837
_1867
HP15_1868: HP15_1868 - biopolymer transport protein ExbD/TolR, at 1,973,882 to 1,974,346
_1868
Position (kb)
1972
1973
1974 Strain fitness (log2 ratio)
-2
-1
0
1 at 1971.437 kb on + strand, within HP15_1864 at 1971.460 kb on - strand, within HP15_1864 at 1971.610 kb on + strand at 1971.824 kb on - strand at 1971.852 kb on + strand at 1971.854 kb on + strand at 1971.880 kb on + strand at 1971.890 kb on + strand at 1971.955 kb on + strand, within HP15_1865 at 1971.955 kb on + strand, within HP15_1865 at 1971.963 kb on - strand, within HP15_1865 at 1971.963 kb on - strand, within HP15_1865 at 1971.963 kb on - strand, within HP15_1865 at 1971.963 kb on - strand, within HP15_1865 at 1971.980 kb on + strand, within HP15_1865 at 1972.076 kb on - strand, within HP15_1865 at 1972.140 kb on + strand, within HP15_1865 at 1972.143 kb on - strand, within HP15_1865 at 1972.520 kb on + strand, within HP15_1866 at 1972.590 kb on + strand, within HP15_1866 at 1972.711 kb on - strand, within HP15_1866 at 1972.775 kb on - strand, within HP15_1866 at 1972.865 kb on - strand, within HP15_1866 at 1972.926 kb on + strand, within HP15_1866 at 1973.112 kb on - strand, within HP15_1866 at 1973.215 kb on + strand, within HP15_1866 at 1973.289 kb on + strand at 1973.347 kb on + strand at 1973.347 kb on + strand at 1973.347 kb on + strand at 1973.427 kb on + strand at 1973.460 kb on + strand, within HP15_1867 at 1973.468 kb on - strand, within HP15_1867 at 1973.468 kb on - strand, within HP15_1867 at 1973.614 kb on + strand, within HP15_1867 at 1973.632 kb on + strand, within HP15_1867 at 1973.806 kb on - strand at 1973.821 kb on + strand at 1973.822 kb on - strand at 1973.886 kb on - strand at 1973.886 kb on - strand at 1973.937 kb on + strand, within HP15_1868 at 1973.976 kb on - strand, within HP15_1868 at 1974.037 kb on + strand, within HP15_1868 at 1974.045 kb on - strand, within HP15_1868 at 1974.117 kb on + strand, within HP15_1868 at 1974.130 kb on - strand, within HP15_1868
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.004 mg/ml remove 1,971,437 + HP15_1864 0.85 -1.8 1,971,460 - HP15_1864 0.87 -0.3 1,971,610 + -2.0 1,971,824 - +0.2 1,971,852 + -0.2 1,971,854 + +0.7 1,971,880 + -0.2 1,971,890 + -0.2 1,971,955 + HP15_1865 0.16 -0.6 1,971,955 + HP15_1865 0.16 -0.2 1,971,963 - HP15_1865 0.18 -0.0 1,971,963 - HP15_1865 0.18 +0.5 1,971,963 - HP15_1865 0.18 +0.1 1,971,963 - HP15_1865 0.18 -0.7 1,971,980 + HP15_1865 0.21 -0.1 1,972,076 - HP15_1865 0.41 -0.3 1,972,140 + HP15_1865 0.54 +0.1 1,972,143 - HP15_1865 0.55 -0.5 1,972,520 + HP15_1866 0.12 -0.6 1,972,590 + HP15_1866 0.20 -0.1 1,972,711 - HP15_1866 0.34 +0.0 1,972,775 - HP15_1866 0.41 +0.0 1,972,865 - HP15_1866 0.51 -0.7 1,972,926 + HP15_1866 0.57 +0.4 1,973,112 - HP15_1866 0.78 +0.1 1,973,215 + HP15_1866 0.90 +0.0 1,973,289 + -0.5 1,973,347 + -0.5 1,973,347 + -0.1 1,973,347 + +0.1 1,973,427 + -0.1 1,973,460 + HP15_1867 0.14 -0.0 1,973,468 - HP15_1867 0.16 +0.3 1,973,468 - HP15_1867 0.16 +0.5 1,973,614 + HP15_1867 0.49 +0.7 1,973,632 + HP15_1867 0.53 +0.5 1,973,806 - -0.2 1,973,821 + +0.0 1,973,822 - +0.2 1,973,886 - -0.1 1,973,886 - -0.2 1,973,937 + HP15_1868 0.12 +0.3 1,973,976 - HP15_1868 0.20 +0.3 1,974,037 + HP15_1868 0.33 -0.1 1,974,045 - HP15_1868 0.35 -0.2 1,974,117 + HP15_1868 0.51 +0.1 1,974,130 - HP15_1868 0.53 +0.1
Or see this region's nucleotide sequence