Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c17300

Experiment: m.b. Fusidic 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c17290 and PGA1_c17300 are separated by 132 nucleotidesPGA1_c17300 and PGA1_c17310 are separated by 212 nucleotides PGA1_c17290: PGA1_c17290 - transcriptional regulator, LysR family, at 1,803,913 to 1,804,809 _c17290 PGA1_c17300: PGA1_c17300 - methylmalonate-semialdehyde dehydrogenase, at 1,804,942 to 1,806,441 _c17300 PGA1_c17310: PGA1_c17310 - putative fatty acid desaturase, at 1,806,654 to 1,807,682 _c17310 Position (kb) 1804 1805 1806 1807Strain fitness (log2 ratio) -2 -1 0 1at 1803.954 kb on - strandat 1803.972 kb on - strandat 1804.002 kb on - strandat 1804.105 kb on + strand, within PGA1_c17290at 1804.105 kb on + strand, within PGA1_c17290at 1804.118 kb on - strand, within PGA1_c17290at 1804.193 kb on + strand, within PGA1_c17290at 1804.193 kb on + strand, within PGA1_c17290at 1804.193 kb on + strand, within PGA1_c17290at 1804.193 kb on + strand, within PGA1_c17290at 1804.201 kb on - strand, within PGA1_c17290at 1804.297 kb on - strand, within PGA1_c17290at 1804.328 kb on - strand, within PGA1_c17290at 1804.352 kb on - strand, within PGA1_c17290at 1804.353 kb on + strand, within PGA1_c17290at 1804.409 kb on - strand, within PGA1_c17290at 1804.547 kb on - strand, within PGA1_c17290at 1804.547 kb on - strand, within PGA1_c17290at 1804.547 kb on - strand, within PGA1_c17290at 1804.564 kb on + strand, within PGA1_c17290at 1804.576 kb on - strand, within PGA1_c17290at 1804.595 kb on - strand, within PGA1_c17290at 1804.633 kb on - strand, within PGA1_c17290at 1804.635 kb on + strand, within PGA1_c17290at 1804.635 kb on + strand, within PGA1_c17290at 1804.635 kb on + strand, within PGA1_c17290at 1804.635 kb on + strand, within PGA1_c17290at 1804.635 kb on + strand, within PGA1_c17290at 1804.637 kb on + strand, within PGA1_c17290at 1804.637 kb on + strand, within PGA1_c17290at 1804.640 kb on - strand, within PGA1_c17290at 1804.643 kb on - strand, within PGA1_c17290at 1804.643 kb on - strand, within PGA1_c17290at 1804.643 kb on - strand, within PGA1_c17290at 1804.643 kb on - strand, within PGA1_c17290at 1804.645 kb on - strand, within PGA1_c17290at 1804.717 kb on - strand, within PGA1_c17290at 1804.750 kb on - strandat 1804.772 kb on + strandat 1804.805 kb on + strandat 1804.988 kb on + strandat 1805.052 kb on + strandat 1805.164 kb on + strand, within PGA1_c17300at 1805.190 kb on + strand, within PGA1_c17300at 1805.197 kb on + strand, within PGA1_c17300at 1805.197 kb on + strand, within PGA1_c17300at 1805.197 kb on + strand, within PGA1_c17300at 1805.197 kb on + strand, within PGA1_c17300at 1805.197 kb on + strand, within PGA1_c17300at 1805.197 kb on + strand, within PGA1_c17300at 1805.197 kb on + strand, within PGA1_c17300at 1805.197 kb on + strand, within PGA1_c17300at 1805.205 kb on - strand, within PGA1_c17300at 1805.255 kb on + strand, within PGA1_c17300at 1805.255 kb on + strand, within PGA1_c17300at 1805.255 kb on + strand, within PGA1_c17300at 1805.263 kb on - strand, within PGA1_c17300at 1805.318 kb on + strand, within PGA1_c17300at 1805.326 kb on - strand, within PGA1_c17300at 1805.375 kb on + strand, within PGA1_c17300at 1805.428 kb on + strand, within PGA1_c17300at 1805.523 kb on + strand, within PGA1_c17300at 1805.634 kb on + strand, within PGA1_c17300at 1805.888 kb on - strand, within PGA1_c17300at 1805.940 kb on + strand, within PGA1_c17300at 1805.958 kb on + strand, within PGA1_c17300at 1806.018 kb on - strand, within PGA1_c17300at 1806.049 kb on - strand, within PGA1_c17300at 1806.114 kb on - strand, within PGA1_c17300at 1806.254 kb on - strand, within PGA1_c17300at 1806.274 kb on + strand, within PGA1_c17300at 1806.337 kb on + strandat 1806.345 kb on - strandat 1806.366 kb on + strandat 1806.372 kb on + strandat 1806.472 kb on - strandat 1806.498 kb on + strandat 1806.535 kb on + strandat 1806.608 kb on + strandat 1806.630 kb on - strandat 1806.754 kb on + strandat 1806.789 kb on - strand, within PGA1_c17310at 1806.791 kb on + strand, within PGA1_c17310at 1806.791 kb on + strand, within PGA1_c17310at 1806.791 kb on + strand, within PGA1_c17310at 1806.791 kb on + strand, within PGA1_c17310at 1806.791 kb on + strand, within PGA1_c17310at 1806.799 kb on - strand, within PGA1_c17310at 1806.799 kb on - strand, within PGA1_c17310at 1806.799 kb on - strand, within PGA1_c17310at 1806.799 kb on - strand, within PGA1_c17310at 1806.799 kb on - strand, within PGA1_c17310at 1806.799 kb on - strand, within PGA1_c17310at 1806.799 kb on - strand, within PGA1_c17310at 1806.799 kb on - strand, within PGA1_c17310at 1806.799 kb on - strand, within PGA1_c17310at 1806.806 kb on - strand, within PGA1_c17310at 1806.816 kb on + strand, within PGA1_c17310at 1806.824 kb on - strand, within PGA1_c17310at 1806.824 kb on - strand, within PGA1_c17310at 1806.832 kb on + strand, within PGA1_c17310at 1806.840 kb on - strand, within PGA1_c17310at 1806.846 kb on - strand, within PGA1_c17310at 1806.865 kb on - strand, within PGA1_c17310at 1806.878 kb on + strand, within PGA1_c17310at 1806.963 kb on - strand, within PGA1_c17310at 1806.978 kb on + strand, within PGA1_c17310at 1807.061 kb on + strand, within PGA1_c17310at 1807.069 kb on - strand, within PGA1_c17310at 1807.071 kb on - strand, within PGA1_c17310at 1807.104 kb on - strand, within PGA1_c17310at 1807.152 kb on + strand, within PGA1_c17310at 1807.160 kb on - strand, within PGA1_c17310at 1807.211 kb on - strand, within PGA1_c17310at 1807.211 kb on - strand, within PGA1_c17310at 1807.323 kb on - strand, within PGA1_c17310at 1807.425 kb on - strand, within PGA1_c17310

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
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1,803,954 - +0.3
1,803,972 - -0.8
1,804,002 - +0.5
1,804,105 + PGA1_c17290 0.21 +0.4
1,804,105 + PGA1_c17290 0.21 +0.6
1,804,118 - PGA1_c17290 0.23 +0.1
1,804,193 + PGA1_c17290 0.31 +0.3
1,804,193 + PGA1_c17290 0.31 +1.0
1,804,193 + PGA1_c17290 0.31 -0.3
1,804,193 + PGA1_c17290 0.31 -0.9
1,804,201 - PGA1_c17290 0.32 +0.5
1,804,297 - PGA1_c17290 0.43 +0.5
1,804,328 - PGA1_c17290 0.46 -0.5
1,804,352 - PGA1_c17290 0.49 +1.3
1,804,353 + PGA1_c17290 0.49 -0.3
1,804,409 - PGA1_c17290 0.55 -0.4
1,804,547 - PGA1_c17290 0.71 -0.2
1,804,547 - PGA1_c17290 0.71 -0.3
1,804,547 - PGA1_c17290 0.71 +0.2
1,804,564 + PGA1_c17290 0.73 +0.2
1,804,576 - PGA1_c17290 0.74 -0.2
1,804,595 - PGA1_c17290 0.76 +0.2
1,804,633 - PGA1_c17290 0.80 -0.8
1,804,635 + PGA1_c17290 0.80 -0.1
1,804,635 + PGA1_c17290 0.80 +0.0
1,804,635 + PGA1_c17290 0.80 -0.2
1,804,635 + PGA1_c17290 0.80 +0.2
1,804,635 + PGA1_c17290 0.80 -2.2
1,804,637 + PGA1_c17290 0.81 +0.4
1,804,637 + PGA1_c17290 0.81 -0.9
1,804,640 - PGA1_c17290 0.81 -0.7
1,804,643 - PGA1_c17290 0.81 -1.5
1,804,643 - PGA1_c17290 0.81 +1.2
1,804,643 - PGA1_c17290 0.81 -0.7
1,804,643 - PGA1_c17290 0.81 -0.2
1,804,645 - PGA1_c17290 0.82 -0.0
1,804,717 - PGA1_c17290 0.90 -0.4
1,804,750 - +0.0
1,804,772 + +1.4
1,804,805 + -0.3
1,804,988 + +0.6
1,805,052 + -1.5
1,805,164 + PGA1_c17300 0.15 -0.9
1,805,190 + PGA1_c17300 0.17 +0.4
1,805,197 + PGA1_c17300 0.17 -0.7
1,805,197 + PGA1_c17300 0.17 +0.3
1,805,197 + PGA1_c17300 0.17 +0.8
1,805,197 + PGA1_c17300 0.17 -0.5
1,805,197 + PGA1_c17300 0.17 -2.2
1,805,197 + PGA1_c17300 0.17 -0.7
1,805,197 + PGA1_c17300 0.17 +0.3
1,805,197 + PGA1_c17300 0.17 +0.3
1,805,205 - PGA1_c17300 0.18 +0.4
1,805,255 + PGA1_c17300 0.21 -0.1
1,805,255 + PGA1_c17300 0.21 -0.2
1,805,255 + PGA1_c17300 0.21 -0.4
1,805,263 - PGA1_c17300 0.21 -0.2
1,805,318 + PGA1_c17300 0.25 +0.2
1,805,326 - PGA1_c17300 0.26 +0.6
1,805,375 + PGA1_c17300 0.29 -0.4
1,805,428 + PGA1_c17300 0.32 +0.4
1,805,523 + PGA1_c17300 0.39 -0.3
1,805,634 + PGA1_c17300 0.46 -0.2
1,805,888 - PGA1_c17300 0.63 +0.6
1,805,940 + PGA1_c17300 0.67 +0.4
1,805,958 + PGA1_c17300 0.68 -0.5
1,806,018 - PGA1_c17300 0.72 +0.7
1,806,049 - PGA1_c17300 0.74 -1.2
1,806,114 - PGA1_c17300 0.78 +0.4
1,806,254 - PGA1_c17300 0.87 +0.5
1,806,274 + PGA1_c17300 0.89 +1.6
1,806,337 + +0.3
1,806,345 - +0.4
1,806,366 + +0.3
1,806,372 + -0.0
1,806,472 - -0.1
1,806,498 + +0.5
1,806,535 + +0.4
1,806,608 + -0.4
1,806,630 - -1.2
1,806,754 + -0.7
1,806,789 - PGA1_c17310 0.13 -0.8
1,806,791 + PGA1_c17310 0.13 -0.6
1,806,791 + PGA1_c17310 0.13 -0.2
1,806,791 + PGA1_c17310 0.13 +0.5
1,806,791 + PGA1_c17310 0.13 +0.3
1,806,791 + PGA1_c17310 0.13 -0.2
1,806,799 - PGA1_c17310 0.14 +0.7
1,806,799 - PGA1_c17310 0.14 +0.1
1,806,799 - PGA1_c17310 0.14 +0.2
1,806,799 - PGA1_c17310 0.14 +0.3
1,806,799 - PGA1_c17310 0.14 -0.1
1,806,799 - PGA1_c17310 0.14 +0.1
1,806,799 - PGA1_c17310 0.14 -0.9
1,806,799 - PGA1_c17310 0.14 +0.8
1,806,799 - PGA1_c17310 0.14 +0.5
1,806,806 - PGA1_c17310 0.15 +0.2
1,806,816 + PGA1_c17310 0.16 -2.0
1,806,824 - PGA1_c17310 0.17 -0.1
1,806,824 - PGA1_c17310 0.17 -0.1
1,806,832 + PGA1_c17310 0.17 +0.3
1,806,840 - PGA1_c17310 0.18 +0.2
1,806,846 - PGA1_c17310 0.19 -0.5
1,806,865 - PGA1_c17310 0.21 -0.1
1,806,878 + PGA1_c17310 0.22 +0.6
1,806,963 - PGA1_c17310 0.30 -0.1
1,806,978 + PGA1_c17310 0.31 +0.8
1,807,061 + PGA1_c17310 0.40 -0.2
1,807,069 - PGA1_c17310 0.40 -0.4
1,807,071 - PGA1_c17310 0.41 +0.0
1,807,104 - PGA1_c17310 0.44 +0.1
1,807,152 + PGA1_c17310 0.48 -0.7
1,807,160 - PGA1_c17310 0.49 +0.1
1,807,211 - PGA1_c17310 0.54 -0.4
1,807,211 - PGA1_c17310 0.54 +0.3
1,807,323 - PGA1_c17310 0.65 +1.4
1,807,425 - PGA1_c17310 0.75 -1.8

Or see this region's nucleotide sequence