Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c17180 and PGA1_c17190 are separated by 114 nucleotides PGA1_c17190 and PGA1_c17200 are separated by 133 nucleotides PGA1_c17200 and PGA1_c17210 are separated by 76 nucleotides PGA1_c17210 and PGA1_c17220 overlap by 1 nucleotides
PGA1_c17180: PGA1_c17180 - putative glutaredoxin, at 1,793,352 to 1,793,714
_c17180
PGA1_c17190: PGA1_c17190 - Predicted membrane protein, at 1,793,829 to 1,794,509
_c17190
PGA1_c17200: PGA1_c17200 - transcriptional regulator, TetR family, at 1,794,643 to 1,795,119
_c17200
PGA1_c17210: PGA1_c17210 - cell division protein ZapA-like protein, at 1,795,196 to 1,795,594
_c17210
PGA1_c17220: PGA1_c17220 - hypothetical protein, at 1,795,594 to 1,796,622
_c17220
Position (kb)
1794
1795
1796 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1793.741 kb on - strand at 1793.811 kb on + strand at 1793.819 kb on - strand at 1793.819 kb on - strand at 1793.866 kb on + strand at 1793.866 kb on + strand at 1793.874 kb on - strand at 1793.874 kb on - strand at 1793.874 kb on - strand at 1793.874 kb on - strand at 1793.874 kb on - strand at 1793.874 kb on - strand at 1793.874 kb on - strand at 1793.874 kb on - strand at 1793.921 kb on + strand, within PGA1_c17190 at 1793.966 kb on + strand, within PGA1_c17190 at 1794.008 kb on + strand, within PGA1_c17190 at 1794.064 kb on + strand, within PGA1_c17190 at 1794.116 kb on + strand, within PGA1_c17190 at 1794.116 kb on + strand, within PGA1_c17190 at 1794.119 kb on - strand, within PGA1_c17190 at 1794.124 kb on - strand, within PGA1_c17190 at 1794.124 kb on - strand, within PGA1_c17190 at 1794.134 kb on + strand, within PGA1_c17190 at 1794.134 kb on + strand, within PGA1_c17190 at 1794.142 kb on - strand, within PGA1_c17190 at 1794.142 kb on - strand, within PGA1_c17190 at 1794.144 kb on + strand, within PGA1_c17190 at 1794.165 kb on + strand, within PGA1_c17190 at 1794.167 kb on + strand, within PGA1_c17190 at 1794.170 kb on - strand, within PGA1_c17190 at 1794.186 kb on - strand, within PGA1_c17190 at 1794.264 kb on + strand, within PGA1_c17190 at 1794.279 kb on - strand, within PGA1_c17190 at 1794.281 kb on + strand, within PGA1_c17190 at 1794.286 kb on + strand, within PGA1_c17190 at 1794.289 kb on - strand, within PGA1_c17190 at 1794.292 kb on + strand, within PGA1_c17190 at 1794.292 kb on + strand, within PGA1_c17190 at 1794.294 kb on - strand, within PGA1_c17190 at 1794.373 kb on + strand, within PGA1_c17190 at 1794.377 kb on - strand, within PGA1_c17190 at 1794.424 kb on + strand, within PGA1_c17190 at 1794.438 kb on - strand, within PGA1_c17190 at 1794.455 kb on - strand at 1794.470 kb on + strand at 1794.470 kb on + strand at 1794.604 kb on - strand at 1794.608 kb on - strand at 1794.668 kb on + strand at 1794.754 kb on + strand, within PGA1_c17200 at 1794.762 kb on - strand, within PGA1_c17200 at 1794.762 kb on - strand, within PGA1_c17200 at 1794.765 kb on + strand, within PGA1_c17200 at 1794.839 kb on - strand, within PGA1_c17200 at 1794.978 kb on - strand, within PGA1_c17200 at 1795.152 kb on - strand at 1795.152 kb on - strand at 1795.476 kb on + strand, within PGA1_c17210 at 1795.527 kb on - strand, within PGA1_c17210 at 1795.537 kb on - strand, within PGA1_c17210 at 1795.552 kb on + strand, within PGA1_c17210 at 1795.726 kb on + strand, within PGA1_c17220 at 1795.749 kb on + strand, within PGA1_c17220 at 1795.767 kb on - strand, within PGA1_c17220 at 1795.767 kb on - strand, within PGA1_c17220 at 1795.777 kb on - strand, within PGA1_c17220 at 1795.898 kb on - strand, within PGA1_c17220
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 1,793,741 - -0.3 1,793,811 + +0.3 1,793,819 - -2.0 1,793,819 - -0.8 1,793,866 + -1.0 1,793,866 + +1.4 1,793,874 - -0.9 1,793,874 - +1.0 1,793,874 - +0.4 1,793,874 - +0.8 1,793,874 - -0.7 1,793,874 - -0.7 1,793,874 - +0.4 1,793,874 - -0.3 1,793,921 + PGA1_c17190 0.14 -0.4 1,793,966 + PGA1_c17190 0.20 +1.4 1,794,008 + PGA1_c17190 0.26 -0.5 1,794,064 + PGA1_c17190 0.35 +0.4 1,794,116 + PGA1_c17190 0.42 +0.2 1,794,116 + PGA1_c17190 0.42 +0.5 1,794,119 - PGA1_c17190 0.43 -0.3 1,794,124 - PGA1_c17190 0.43 -0.1 1,794,124 - PGA1_c17190 0.43 +0.2 1,794,134 + PGA1_c17190 0.45 +0.0 1,794,134 + PGA1_c17190 0.45 -0.9 1,794,142 - PGA1_c17190 0.46 -1.1 1,794,142 - PGA1_c17190 0.46 +0.1 1,794,144 + PGA1_c17190 0.46 -1.0 1,794,165 + PGA1_c17190 0.49 +0.5 1,794,167 + PGA1_c17190 0.50 +0.1 1,794,170 - PGA1_c17190 0.50 -0.3 1,794,186 - PGA1_c17190 0.52 -0.1 1,794,264 + PGA1_c17190 0.64 -0.4 1,794,279 - PGA1_c17190 0.66 +0.4 1,794,281 + PGA1_c17190 0.66 -1.9 1,794,286 + PGA1_c17190 0.67 -0.7 1,794,289 - PGA1_c17190 0.68 +0.3 1,794,292 + PGA1_c17190 0.68 +0.4 1,794,292 + PGA1_c17190 0.68 +0.9 1,794,294 - PGA1_c17190 0.68 -0.1 1,794,373 + PGA1_c17190 0.80 -0.7 1,794,377 - PGA1_c17190 0.80 +0.0 1,794,424 + PGA1_c17190 0.87 -0.1 1,794,438 - PGA1_c17190 0.89 +0.1 1,794,455 - -0.4 1,794,470 + -0.4 1,794,470 + -0.9 1,794,604 - -0.2 1,794,608 - +1.4 1,794,668 + +0.1 1,794,754 + PGA1_c17200 0.23 -3.3 1,794,762 - PGA1_c17200 0.25 -1.1 1,794,762 - PGA1_c17200 0.25 -0.8 1,794,765 + PGA1_c17200 0.26 -0.6 1,794,839 - PGA1_c17200 0.41 -0.1 1,794,978 - PGA1_c17200 0.70 -0.5 1,795,152 - +0.9 1,795,152 - +0.1 1,795,476 + PGA1_c17210 0.70 -1.2 1,795,527 - PGA1_c17210 0.83 -0.2 1,795,537 - PGA1_c17210 0.85 -2.0 1,795,552 + PGA1_c17210 0.89 -0.2 1,795,726 + PGA1_c17220 0.13 +1.0 1,795,749 + PGA1_c17220 0.15 -0.1 1,795,767 - PGA1_c17220 0.17 -0.2 1,795,767 - PGA1_c17220 0.17 -0.1 1,795,777 - PGA1_c17220 0.18 +0.5 1,795,898 - PGA1_c17220 0.30 -0.6
Or see this region's nucleotide sequence