Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c16920

Experiment: m.b. Fusidic 0.0002 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c16900 and PGA1_c16910 are separated by 14 nucleotidesPGA1_c16910 and PGA1_c16920 overlap by 1 nucleotidesPGA1_c16920 and PGA1_c16930 are separated by 0 nucleotides PGA1_c16900: PGA1_c16900 - uracil-DNA glycosylase Ung, at 1,764,661 to 1,765,314 _c16900 PGA1_c16910: PGA1_c16910 - indole-3-glycerol phosphate synthase TrpC, at 1,765,329 to 1,766,141 _c16910 PGA1_c16920: PGA1_c16920 - molybdenum cofactor biosynthesis protein C, at 1,766,141 to 1,766,611 _c16920 PGA1_c16930: PGA1_c16930 - molybdopterin biosynthesis protein MoeA, at 1,766,612 to 1,767,784 _c16930 Position (kb) 1766 1767Strain fitness (log2 ratio) -2 -1 0 1at 1765.189 kb on + strand, within PGA1_c16900at 1765.189 kb on + strand, within PGA1_c16900at 1765.192 kb on - strand, within PGA1_c16900at 1765.206 kb on + strand, within PGA1_c16900at 1765.206 kb on + strand, within PGA1_c16900at 1765.206 kb on + strand, within PGA1_c16900at 1765.206 kb on + strand, within PGA1_c16900at 1765.214 kb on - strand, within PGA1_c16900at 1765.214 kb on - strand, within PGA1_c16900at 1765.216 kb on - strand, within PGA1_c16900at 1765.290 kb on + strandat 1766.364 kb on + strand, within PGA1_c16920at 1766.396 kb on + strand, within PGA1_c16920at 1766.494 kb on + strand, within PGA1_c16920at 1766.676 kb on + strandat 1766.809 kb on + strand, within PGA1_c16930at 1766.957 kb on + strand, within PGA1_c16930at 1767.041 kb on - strand, within PGA1_c16930at 1767.041 kb on - strand, within PGA1_c16930at 1767.212 kb on - strand, within PGA1_c16930at 1767.272 kb on + strand, within PGA1_c16930at 1767.293 kb on + strand, within PGA1_c16930at 1767.301 kb on - strand, within PGA1_c16930at 1767.301 kb on - strand, within PGA1_c16930at 1767.301 kb on - strand, within PGA1_c16930at 1767.312 kb on + strand, within PGA1_c16930at 1767.384 kb on + strand, within PGA1_c16930at 1767.542 kb on + strand, within PGA1_c16930at 1767.555 kb on - strand, within PGA1_c16930

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
remove
1,765,189 + PGA1_c16900 0.81 -2.2
1,765,189 + PGA1_c16900 0.81 -1.2
1,765,192 - PGA1_c16900 0.81 -0.5
1,765,206 + PGA1_c16900 0.83 -0.5
1,765,206 + PGA1_c16900 0.83 -0.3
1,765,206 + PGA1_c16900 0.83 -0.2
1,765,206 + PGA1_c16900 0.83 +0.2
1,765,214 - PGA1_c16900 0.85 +0.3
1,765,214 - PGA1_c16900 0.85 -0.3
1,765,216 - PGA1_c16900 0.85 -0.8
1,765,290 + +0.3
1,766,364 + PGA1_c16920 0.47 +0.5
1,766,396 + PGA1_c16920 0.54 +0.0
1,766,494 + PGA1_c16920 0.75 +0.6
1,766,676 + +0.9
1,766,809 + PGA1_c16930 0.17 +0.4
1,766,957 + PGA1_c16930 0.29 -1.1
1,767,041 - PGA1_c16930 0.37 -0.2
1,767,041 - PGA1_c16930 0.37 +1.7
1,767,212 - PGA1_c16930 0.51 -0.1
1,767,272 + PGA1_c16930 0.56 -0.2
1,767,293 + PGA1_c16930 0.58 -0.5
1,767,301 - PGA1_c16930 0.59 +1.0
1,767,301 - PGA1_c16930 0.59 +0.5
1,767,301 - PGA1_c16930 0.59 -0.2
1,767,312 + PGA1_c16930 0.60 -0.7
1,767,384 + PGA1_c16930 0.66 -0.3
1,767,542 + PGA1_c16930 0.79 +0.4
1,767,555 - PGA1_c16930 0.80 -0.2

Or see this region's nucleotide sequence