Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c14510 and PGA1_c14520 are separated by 5 nucleotides PGA1_c14520 and PGA1_c14530 are separated by 114 nucleotides PGA1_c14530 and PGA1_c14540 overlap by 8 nucleotides PGA1_c14540 and PGA1_c14550 are separated by 61 nucleotides
PGA1_c14510: PGA1_c14510 - 50S ribosomal protein L13, at 1,506,463 to 1,506,921
_c14510
PGA1_c14520: PGA1_c14520 - 30S ribosomal protein S9, at 1,506,927 to 1,507,412
_c14520
PGA1_c14530: PGA1_c14530 - transcriptional regulator, TetR family, at 1,507,527 to 1,508,144
_c14530
PGA1_c14540: PGA1_c14540 - putative polyphosphate kinase 2, at 1,508,137 to 1,509,006
_c14540
PGA1_c14550: PGA1_c14550 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 1,509,068 to 1,510,060
_c14550
Position (kb)
1507
1508
1509 Strain fitness (log2 ratio)
-1
0
1
2 at 1507.480 kb on + strand at 1507.515 kb on - strand at 1507.515 kb on - strand at 1507.547 kb on + strand at 1507.555 kb on - strand at 1507.853 kb on + strand, within PGA1_c14530 at 1507.877 kb on - strand, within PGA1_c14530 at 1507.892 kb on + strand, within PGA1_c14530 at 1508.100 kb on - strand at 1508.100 kb on - strand at 1508.355 kb on + strand, within PGA1_c14540 at 1508.480 kb on - strand, within PGA1_c14540 at 1508.480 kb on - strand, within PGA1_c14540 at 1508.499 kb on + strand, within PGA1_c14540 at 1508.507 kb on + strand, within PGA1_c14540 at 1508.507 kb on - strand, within PGA1_c14540 at 1508.507 kb on - strand, within PGA1_c14540 at 1508.515 kb on - strand, within PGA1_c14540 at 1508.678 kb on + strand, within PGA1_c14540 at 1508.678 kb on + strand, within PGA1_c14540 at 1508.696 kb on - strand, within PGA1_c14540 at 1509.087 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 1,507,480 + +0.5 1,507,515 - -1.1 1,507,515 - -0.1 1,507,547 + +2.1 1,507,555 - +0.6 1,507,853 + PGA1_c14530 0.53 +0.9 1,507,877 - PGA1_c14530 0.57 +1.1 1,507,892 + PGA1_c14530 0.59 +2.7 1,508,100 - +1.0 1,508,100 - +0.3 1,508,355 + PGA1_c14540 0.25 +1.2 1,508,480 - PGA1_c14540 0.39 +0.6 1,508,480 - PGA1_c14540 0.39 +1.7 1,508,499 + PGA1_c14540 0.42 +2.0 1,508,507 + PGA1_c14540 0.43 -1.4 1,508,507 - PGA1_c14540 0.43 +0.3 1,508,507 - PGA1_c14540 0.43 +0.9 1,508,515 - PGA1_c14540 0.43 -0.3 1,508,678 + PGA1_c14540 0.62 +0.9 1,508,678 + PGA1_c14540 0.62 +0.1 1,508,696 - PGA1_c14540 0.64 -0.1 1,509,087 + +0.2
Or see this region's nucleotide sequence