Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c14460 and PGA1_c14470 are separated by 186 nucleotides PGA1_c14470 and PGA1_c14480 overlap by 4 nucleotides PGA1_c14480 and PGA1_c14490 are separated by 212 nucleotides
PGA1_c14460: PGA1_c14460 - putative phosphatidylserine decarboxylase, at 1,501,899 to 1,502,789
_c14460
PGA1_c14470: PGA1_c14470 - spermidine synthase SpeE, at 1,502,976 to 1,503,830
_c14470
PGA1_c14480: PGA1_c14480 - S-adenosylmethionine decarboxylase SpeH, at 1,503,827 to 1,504,348
_c14480
PGA1_c14490: PGA1_c14490 - Uncharacterized conserved small protein, at 1,504,561 to 1,504,794
_c14490
Position (kb) 1502
1503
1504 Strain fitness (log2 ratio) -2
-1
0
1 at 1502.794 kb on - strand at 1502.870 kb on + strand at 1502.878 kb on - strand at 1502.906 kb on - strand at 1503.009 kb on + strand at 1503.037 kb on - strand at 1503.100 kb on - strand, within PGA1_c14470 at 1503.247 kb on - strand, within PGA1_c14470 at 1503.281 kb on - strand, within PGA1_c14470 at 1503.313 kb on + strand, within PGA1_c14470 at 1503.448 kb on - strand, within PGA1_c14470 at 1503.557 kb on - strand, within PGA1_c14470 at 1503.674 kb on - strand, within PGA1_c14470 at 1503.674 kb on - strand, within PGA1_c14470 at 1503.674 kb on - strand, within PGA1_c14470 at 1503.679 kb on - strand, within PGA1_c14470 at 1503.712 kb on + strand, within PGA1_c14470 at 1503.742 kb on + strand, within PGA1_c14470 at 1503.849 kb on - strand at 1503.849 kb on - strand at 1503.849 kb on - strand at 1503.895 kb on + strand, within PGA1_c14480 at 1503.895 kb on + strand, within PGA1_c14480 at 1503.903 kb on - strand, within PGA1_c14480 at 1503.903 kb on - strand, within PGA1_c14480 at 1503.903 kb on - strand, within PGA1_c14480 at 1503.903 kb on - strand, within PGA1_c14480 at 1503.949 kb on + strand, within PGA1_c14480 at 1503.965 kb on + strand, within PGA1_c14480 at 1503.981 kb on - strand, within PGA1_c14480 at 1504.098 kb on + strand, within PGA1_c14480 at 1504.156 kb on - strand, within PGA1_c14480 at 1504.183 kb on + strand, within PGA1_c14480 at 1504.193 kb on + strand, within PGA1_c14480 at 1504.215 kb on - strand, within PGA1_c14480 at 1504.266 kb on + strand, within PGA1_c14480 at 1504.294 kb on - strand, within PGA1_c14480 at 1504.307 kb on + strand at 1504.332 kb on + strand at 1504.412 kb on - strand at 1504.498 kb on + strand at 1504.506 kb on - strand at 1504.506 kb on - strand at 1504.506 kb on - strand at 1504.533 kb on + strand at 1504.552 kb on + strand at 1504.632 kb on + strand, within PGA1_c14490 at 1504.677 kb on - strand, within PGA1_c14490 at 1504.698 kb on + strand, within PGA1_c14490 at 1504.717 kb on - strand, within PGA1_c14490
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 1,502,794 - -0.1 1,502,870 + +0.5 1,502,878 - +0.4 1,502,906 - -0.9 1,503,009 + -0.9 1,503,037 - -0.7 1,503,100 - PGA1_c14470 0.15 -0.8 1,503,247 - PGA1_c14470 0.32 -0.3 1,503,281 - PGA1_c14470 0.36 +0.0 1,503,313 + PGA1_c14470 0.39 -2.7 1,503,448 - PGA1_c14470 0.55 -0.5 1,503,557 - PGA1_c14470 0.68 -0.5 1,503,674 - PGA1_c14470 0.82 +0.9 1,503,674 - PGA1_c14470 0.82 -0.7 1,503,674 - PGA1_c14470 0.82 -0.2 1,503,679 - PGA1_c14470 0.82 -1.1 1,503,712 + PGA1_c14470 0.86 -0.3 1,503,742 + PGA1_c14470 0.90 -0.3 1,503,849 - +0.2 1,503,849 - -0.6 1,503,849 - +1.6 1,503,895 + PGA1_c14480 0.13 +0.9 1,503,895 + PGA1_c14480 0.13 +0.5 1,503,903 - PGA1_c14480 0.15 +0.9 1,503,903 - PGA1_c14480 0.15 -0.5 1,503,903 - PGA1_c14480 0.15 +0.2 1,503,903 - PGA1_c14480 0.15 +0.0 1,503,949 + PGA1_c14480 0.23 -0.6 1,503,965 + PGA1_c14480 0.26 +0.3 1,503,981 - PGA1_c14480 0.30 +0.5 1,504,098 + PGA1_c14480 0.52 +0.4 1,504,156 - PGA1_c14480 0.63 +0.0 1,504,183 + PGA1_c14480 0.68 -0.7 1,504,193 + PGA1_c14480 0.70 +0.3 1,504,215 - PGA1_c14480 0.74 +0.5 1,504,266 + PGA1_c14480 0.84 +0.9 1,504,294 - PGA1_c14480 0.89 +0.4 1,504,307 + +0.3 1,504,332 + -0.2 1,504,412 - +0.4 1,504,498 + +0.3 1,504,506 - +0.5 1,504,506 - +0.2 1,504,506 - +0.1 1,504,533 + -0.2 1,504,552 + -1.6 1,504,632 + PGA1_c14490 0.30 +0.5 1,504,677 - PGA1_c14490 0.50 -0.1 1,504,698 + PGA1_c14490 0.59 +0.2 1,504,717 - PGA1_c14490 0.67 -0.2
Or see this region's nucleotide sequence