Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c13830 and PGA1_c13840 are separated by 554 nucleotides PGA1_c13840 and PGA1_c13850 are separated by 436 nucleotides
PGA1_c13830: PGA1_c13830 - hypothetical protein, at 1,429,541 to 1,430,131
_c13830
PGA1_c13840: PGA1_c13840 - putative transcriptional regulator, AraC family, at 1,430,686 to 1,431,753
_c13840
PGA1_c13850: PGA1_c13850 - SnoaL-like polyketide cyclase., at 1,432,190 to 1,432,645
_c13850
Position (kb) 1430
1431
1432 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1429.760 kb on + strand, within PGA1_c13830 at 1429.799 kb on + strand, within PGA1_c13830 at 1429.802 kb on - strand, within PGA1_c13830 at 1429.815 kb on + strand, within PGA1_c13830 at 1429.902 kb on + strand, within PGA1_c13830 at 1429.908 kb on + strand, within PGA1_c13830 at 1429.946 kb on + strand, within PGA1_c13830 at 1430.010 kb on + strand, within PGA1_c13830 at 1430.020 kb on + strand, within PGA1_c13830 at 1430.020 kb on + strand, within PGA1_c13830 at 1430.033 kb on - strand, within PGA1_c13830 at 1430.040 kb on + strand, within PGA1_c13830 at 1430.048 kb on + strand, within PGA1_c13830 at 1430.050 kb on + strand, within PGA1_c13830 at 1430.050 kb on - strand, within PGA1_c13830 at 1430.094 kb on + strand at 1430.102 kb on - strand at 1430.111 kb on + strand at 1430.126 kb on + strand at 1430.126 kb on + strand at 1430.134 kb on - strand at 1430.134 kb on - strand at 1430.167 kb on + strand at 1430.175 kb on - strand at 1430.175 kb on - strand at 1430.175 kb on - strand at 1430.175 kb on - strand at 1430.175 kb on - strand at 1430.175 kb on - strand at 1430.175 kb on - strand at 1430.182 kb on + strand at 1430.182 kb on + strand at 1430.182 kb on + strand at 1430.192 kb on + strand at 1430.192 kb on + strand at 1430.192 kb on + strand at 1430.192 kb on + strand at 1430.192 kb on + strand at 1430.192 kb on + strand at 1430.192 kb on + strand at 1430.192 kb on + strand at 1430.192 kb on + strand at 1430.192 kb on + strand at 1430.196 kb on + strand at 1430.198 kb on + strand at 1430.198 kb on + strand at 1430.198 kb on + strand at 1430.198 kb on + strand at 1430.200 kb on - strand at 1430.200 kb on - strand at 1430.200 kb on - strand at 1430.200 kb on - strand at 1430.200 kb on - strand at 1430.200 kb on - strand at 1430.200 kb on - strand at 1430.200 kb on - strand at 1430.200 kb on - strand at 1430.205 kb on - strand at 1430.206 kb on - strand at 1430.206 kb on - strand at 1430.207 kb on - strand at 1430.253 kb on + strand at 1430.253 kb on + strand at 1430.253 kb on + strand at 1430.260 kb on + strand at 1430.261 kb on - strand at 1430.261 kb on - strand at 1430.262 kb on + strand at 1430.262 kb on + strand at 1430.262 kb on + strand at 1430.262 kb on + strand at 1430.262 kb on + strand at 1430.262 kb on + strand at 1430.262 kb on + strand at 1430.264 kb on + strand at 1430.270 kb on - strand at 1430.270 kb on - strand at 1430.270 kb on - strand at 1430.270 kb on - strand at 1430.270 kb on - strand at 1430.270 kb on - strand at 1430.291 kb on + strand at 1430.291 kb on + strand at 1430.291 kb on + strand at 1430.291 kb on + strand at 1430.291 kb on + strand at 1430.291 kb on + strand at 1430.291 kb on + strand at 1430.294 kb on + strand at 1430.299 kb on - strand at 1430.299 kb on - strand at 1430.299 kb on - strand at 1430.299 kb on - strand at 1430.301 kb on + strand at 1430.301 kb on + strand at 1430.301 kb on + strand at 1430.301 kb on + strand at 1430.302 kb on + strand at 1430.302 kb on + strand at 1430.309 kb on - strand at 1430.309 kb on - strand at 1430.309 kb on - strand at 1430.309 kb on - strand at 1430.310 kb on - strand at 1430.310 kb on - strand at 1430.310 kb on - strand at 1430.312 kb on + strand at 1430.318 kb on + strand at 1430.325 kb on + strand at 1430.326 kb on - strand at 1430.326 kb on - strand at 1430.330 kb on + strand at 1430.330 kb on + strand at 1430.330 kb on + strand at 1430.330 kb on + strand at 1430.330 kb on + strand at 1430.330 kb on + strand at 1430.330 kb on + strand at 1430.330 kb on + strand at 1430.330 kb on + strand at 1430.330 kb on + strand at 1430.330 kb on + strand at 1430.338 kb on - strand at 1430.338 kb on - strand at 1430.338 kb on - strand at 1430.338 kb on - strand at 1430.338 kb on - strand at 1430.338 kb on - strand at 1430.338 kb on - strand at 1430.338 kb on - strand at 1430.338 kb on - strand at 1430.338 kb on - strand at 1430.340 kb on + strand at 1430.340 kb on + strand at 1430.348 kb on - strand at 1430.348 kb on - strand at 1430.348 kb on - strand at 1430.359 kb on + strand at 1430.359 kb on + strand at 1430.359 kb on + strand at 1430.359 kb on + strand at 1430.359 kb on + strand at 1430.367 kb on - strand at 1430.367 kb on - strand at 1430.367 kb on - strand at 1430.367 kb on - strand at 1430.369 kb on + strand at 1430.377 kb on - strand at 1430.377 kb on - strand at 1430.377 kb on - strand at 1430.384 kb on + strand at 1430.384 kb on + strand at 1430.394 kb on + strand at 1430.409 kb on + strand at 1430.409 kb on + strand at 1430.417 kb on - strand at 1430.448 kb on - strand at 1430.451 kb on + strand at 1430.483 kb on + strand at 1430.491 kb on - strand at 1430.502 kb on + strand at 1430.509 kb on + strand at 1430.509 kb on + strand at 1430.526 kb on + strand at 1430.531 kb on + strand at 1430.534 kb on - strand at 1430.584 kb on + strand at 1430.584 kb on + strand at 1430.589 kb on + strand at 1430.592 kb on - strand at 1430.592 kb on - strand at 1430.594 kb on + strand at 1430.597 kb on - strand at 1430.601 kb on + strand at 1430.668 kb on + strand at 1430.668 kb on + strand at 1430.668 kb on + strand at 1430.668 kb on + strand at 1430.668 kb on + strand at 1430.668 kb on + strand at 1430.668 kb on + strand at 1430.668 kb on + strand at 1430.668 kb on + strand at 1430.668 kb on + strand at 1430.668 kb on + strand at 1430.670 kb on + strand at 1430.672 kb on - strand at 1430.674 kb on + strand at 1430.674 kb on + strand at 1430.675 kb on + strand at 1430.676 kb on - strand at 1430.676 kb on - strand at 1430.676 kb on - strand at 1430.682 kb on - strand at 1430.775 kb on - strand at 1430.812 kb on + strand, within PGA1_c13840 at 1430.820 kb on - strand, within PGA1_c13840 at 1430.820 kb on - strand, within PGA1_c13840 at 1430.827 kb on - strand, within PGA1_c13840 at 1430.832 kb on - strand, within PGA1_c13840 at 1430.843 kb on - strand, within PGA1_c13840 at 1430.844 kb on - strand, within PGA1_c13840 at 1430.928 kb on + strand, within PGA1_c13840 at 1430.998 kb on + strand, within PGA1_c13840 at 1431.023 kb on - strand, within PGA1_c13840 at 1431.125 kb on - strand, within PGA1_c13840 at 1431.130 kb on + strand, within PGA1_c13840 at 1431.171 kb on + strand, within PGA1_c13840 at 1431.176 kb on + strand, within PGA1_c13840 at 1431.179 kb on - strand, within PGA1_c13840 at 1431.186 kb on + strand, within PGA1_c13840 at 1431.186 kb on + strand, within PGA1_c13840 at 1431.186 kb on + strand, within PGA1_c13840 at 1431.420 kb on + strand, within PGA1_c13840 at 1431.542 kb on - strand, within PGA1_c13840 at 1431.568 kb on - strand, within PGA1_c13840 at 1431.616 kb on + strand, within PGA1_c13840 at 1431.713 kb on + strand at 1431.730 kb on + strand at 1431.770 kb on + strand at 1431.770 kb on + strand at 1431.773 kb on - strand at 1432.218 kb on - strand at 1432.220 kb on - strand at 1432.222 kb on + strand at 1432.253 kb on - strand, within PGA1_c13850 at 1432.262 kb on + strand, within PGA1_c13850 at 1432.346 kb on + strand, within PGA1_c13850 at 1432.354 kb on - strand, within PGA1_c13850 at 1432.368 kb on + strand, within PGA1_c13850 at 1432.371 kb on - strand, within PGA1_c13850 at 1432.398 kb on + strand, within PGA1_c13850 at 1432.403 kb on + strand, within PGA1_c13850 at 1432.411 kb on + strand, within PGA1_c13850 at 1432.424 kb on - strand, within PGA1_c13850 at 1432.495 kb on - strand, within PGA1_c13850 at 1432.495 kb on - strand, within PGA1_c13850 at 1432.532 kb on - strand, within PGA1_c13850 at 1432.542 kb on + strand, within PGA1_c13850 at 1432.542 kb on + strand, within PGA1_c13850 at 1432.573 kb on + strand, within PGA1_c13850 at 1432.616 kb on + strand at 1432.628 kb on - strand at 1432.632 kb on + strand at 1432.632 kb on + strand at 1432.673 kb on - strand at 1432.689 kb on + strand at 1432.689 kb on + strand at 1432.724 kb on + strand at 1432.724 kb on + strand at 1432.724 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 1,429,760 + PGA1_c13830 0.37 +0.7 1,429,799 + PGA1_c13830 0.44 +0.7 1,429,802 - PGA1_c13830 0.44 +0.4 1,429,815 + PGA1_c13830 0.46 -0.2 1,429,902 + PGA1_c13830 0.61 +0.0 1,429,908 + PGA1_c13830 0.62 -1.1 1,429,946 + PGA1_c13830 0.69 +1.3 1,430,010 + PGA1_c13830 0.79 -0.1 1,430,020 + PGA1_c13830 0.81 -0.2 1,430,020 + PGA1_c13830 0.81 +0.3 1,430,033 - PGA1_c13830 0.83 -0.8 1,430,040 + PGA1_c13830 0.84 +0.7 1,430,048 + PGA1_c13830 0.86 +0.0 1,430,050 + PGA1_c13830 0.86 -0.8 1,430,050 - PGA1_c13830 0.86 -0.7 1,430,094 + +1.0 1,430,102 - +0.3 1,430,111 + -1.2 1,430,126 + +0.7 1,430,126 + -0.1 1,430,134 - +0.3 1,430,134 - +0.4 1,430,167 + +0.7 1,430,175 - +0.7 1,430,175 - -0.9 1,430,175 - -0.3 1,430,175 - -0.6 1,430,175 - -0.2 1,430,175 - +0.1 1,430,175 - +0.6 1,430,182 + -0.1 1,430,182 + +0.1 1,430,182 + -0.7 1,430,192 + -2.0 1,430,192 + -1.2 1,430,192 + +0.3 1,430,192 + -0.9 1,430,192 + -0.2 1,430,192 + +0.7 1,430,192 + -0.3 1,430,192 + -0.2 1,430,192 + +0.8 1,430,192 + -0.3 1,430,196 + +0.3 1,430,198 + +0.7 1,430,198 + +1.2 1,430,198 + -0.6 1,430,198 + +0.4 1,430,200 - +0.1 1,430,200 - -0.4 1,430,200 - +0.2 1,430,200 - +1.8 1,430,200 - -0.1 1,430,200 - +0.7 1,430,200 - +0.0 1,430,200 - -1.2 1,430,200 - -1.8 1,430,205 - +0.1 1,430,206 - +0.0 1,430,206 - +0.1 1,430,207 - -1.0 1,430,253 + +0.8 1,430,253 + +0.2 1,430,253 + +0.6 1,430,260 + -1.0 1,430,261 - +0.3 1,430,261 - +0.5 1,430,262 + -0.4 1,430,262 + +1.0 1,430,262 + -1.5 1,430,262 + -0.8 1,430,262 + +0.6 1,430,262 + +0.3 1,430,262 + +0.6 1,430,264 + -0.1 1,430,270 - -0.5 1,430,270 - +1.0 1,430,270 - +0.9 1,430,270 - +0.6 1,430,270 - +0.8 1,430,270 - +0.8 1,430,291 + +1.0 1,430,291 + +0.0 1,430,291 + +1.4 1,430,291 + +1.7 1,430,291 + +0.3 1,430,291 + +1.1 1,430,291 + +0.3 1,430,294 + +0.4 1,430,299 - +0.9 1,430,299 - +0.6 1,430,299 - +0.1 1,430,299 - +0.4 1,430,301 + +0.3 1,430,301 + +0.2 1,430,301 + +0.4 1,430,301 + +0.3 1,430,302 + +1.2 1,430,302 + +0.2 1,430,309 - +0.1 1,430,309 - +1.4 1,430,309 - +0.4 1,430,309 - +1.5 1,430,310 - +1.0 1,430,310 - -0.4 1,430,310 - +1.0 1,430,312 + +1.0 1,430,318 + +1.2 1,430,325 + +0.2 1,430,326 - +0.8 1,430,326 - -0.5 1,430,330 + +0.3 1,430,330 + +0.0 1,430,330 + -0.2 1,430,330 + +0.7 1,430,330 + -0.0 1,430,330 + +1.0 1,430,330 + -0.0 1,430,330 + -1.0 1,430,330 + -0.3 1,430,330 + -0.4 1,430,330 + +1.1 1,430,338 - +0.8 1,430,338 - +0.6 1,430,338 - +1.3 1,430,338 - +0.1 1,430,338 - -0.2 1,430,338 - +0.3 1,430,338 - +0.5 1,430,338 - +0.2 1,430,338 - +0.2 1,430,338 - -0.4 1,430,340 + +0.3 1,430,340 + +0.3 1,430,348 - +0.2 1,430,348 - +1.1 1,430,348 - +0.2 1,430,359 + +0.6 1,430,359 + +0.7 1,430,359 + +0.7 1,430,359 + +1.1 1,430,359 + +0.5 1,430,367 - -1.2 1,430,367 - +0.5 1,430,367 - +1.3 1,430,367 - +0.8 1,430,369 + +0.9 1,430,377 - +0.7 1,430,377 - +0.6 1,430,377 - +0.3 1,430,384 + +0.7 1,430,384 + +0.6 1,430,394 + +0.8 1,430,409 + +0.1 1,430,409 + +0.2 1,430,417 - -0.8 1,430,448 - +1.5 1,430,451 + -0.0 1,430,483 + +0.5 1,430,491 - +0.8 1,430,502 + +1.2 1,430,509 + -2.0 1,430,509 + -0.0 1,430,526 + +0.9 1,430,531 + +0.6 1,430,534 - +1.3 1,430,584 + -0.8 1,430,584 + +0.5 1,430,589 + -0.1 1,430,592 - +1.4 1,430,592 - +1.3 1,430,594 + +0.2 1,430,597 - +1.5 1,430,601 + -0.3 1,430,668 + +0.6 1,430,668 + +0.1 1,430,668 + -0.9 1,430,668 + +0.1 1,430,668 + +0.3 1,430,668 + +0.1 1,430,668 + -0.5 1,430,668 + +1.0 1,430,668 + -1.3 1,430,668 + -0.1 1,430,668 + -0.8 1,430,670 + +0.4 1,430,672 - +0.8 1,430,674 + -0.1 1,430,674 + -0.1 1,430,675 + +0.0 1,430,676 - +1.9 1,430,676 - +1.7 1,430,676 - -0.4 1,430,682 - +0.9 1,430,775 - +0.1 1,430,812 + PGA1_c13840 0.12 -1.3 1,430,820 - PGA1_c13840 0.13 +1.6 1,430,820 - PGA1_c13840 0.13 +1.4 1,430,827 - PGA1_c13840 0.13 +1.2 1,430,832 - PGA1_c13840 0.14 +1.4 1,430,843 - PGA1_c13840 0.15 +1.4 1,430,844 - PGA1_c13840 0.15 +0.3 1,430,928 + PGA1_c13840 0.23 +0.9 1,430,998 + PGA1_c13840 0.29 +1.0 1,431,023 - PGA1_c13840 0.32 +0.0 1,431,125 - PGA1_c13840 0.41 +1.3 1,431,130 + PGA1_c13840 0.42 +0.5 1,431,171 + PGA1_c13840 0.45 +2.0 1,431,176 + PGA1_c13840 0.46 +1.3 1,431,179 - PGA1_c13840 0.46 +0.7 1,431,186 + PGA1_c13840 0.47 +0.3 1,431,186 + PGA1_c13840 0.47 +1.6 1,431,186 + PGA1_c13840 0.47 -0.9 1,431,420 + PGA1_c13840 0.69 +0.2 1,431,542 - PGA1_c13840 0.80 +1.3 1,431,568 - PGA1_c13840 0.83 +1.4 1,431,616 + PGA1_c13840 0.87 +0.6 1,431,713 + +0.7 1,431,730 + +0.8 1,431,770 + -1.8 1,431,770 + -0.6 1,431,773 - +0.3 1,432,218 - -0.4 1,432,220 - +0.3 1,432,222 + +0.1 1,432,253 - PGA1_c13850 0.14 +0.1 1,432,262 + PGA1_c13850 0.16 -0.1 1,432,346 + PGA1_c13850 0.34 -0.8 1,432,354 - PGA1_c13850 0.36 +0.2 1,432,368 + PGA1_c13850 0.39 -0.7 1,432,371 - PGA1_c13850 0.40 -0.2 1,432,398 + PGA1_c13850 0.46 +0.1 1,432,403 + PGA1_c13850 0.47 -0.9 1,432,411 + PGA1_c13850 0.48 -0.3 1,432,424 - PGA1_c13850 0.51 -0.3 1,432,495 - PGA1_c13850 0.67 -0.2 1,432,495 - PGA1_c13850 0.67 +0.4 1,432,532 - PGA1_c13850 0.75 +1.0 1,432,542 + PGA1_c13850 0.77 -0.6 1,432,542 + PGA1_c13850 0.77 -0.4 1,432,573 + PGA1_c13850 0.84 -0.4 1,432,616 + -1.1 1,432,628 - -1.0 1,432,632 + +0.7 1,432,632 + +0.4 1,432,673 - +1.0 1,432,689 + +0.6 1,432,689 + -0.2 1,432,724 + -0.8 1,432,724 + +0.5 1,432,724 + +0.5
Or see this region's nucleotide sequence