Strain Fitness in Marinobacter adhaerens HP15 around HP15_1322

Experiment: m.b. Sisomicin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1321 and HP15_tRNA22 are separated by 126 nucleotidesHP15_tRNA22 and HP15_tRNA23 are separated by 64 nucleotidesHP15_tRNA23 and HP15_tRNA24 are separated by 25 nucleotidesHP15_tRNA24 and HP15_1322 are separated by 453 nucleotidesHP15_1322 and HP15_1323 are separated by 55 nucleotidesHP15_1323 and HP15_1324 are separated by 21 nucleotides HP15_1321: HP15_1321 - carbon storage regulator, at 1,385,163 to 1,385,339 _1321 HP15_tRNA22: HP15_tRNA22 - tRNA-Ser, at 1,385,466 to 1,385,555 _tRNA22 HP15_tRNA23: HP15_tRNA23 - tRNA-Arg, at 1,385,620 to 1,385,696 _tRNA23 HP15_tRNA24: HP15_tRNA24 - tRNA-Arg, at 1,385,722 to 1,385,798 _tRNA24 HP15_1322: HP15_1322 - conserved hypothetical protein, at 1,386,252 to 1,387,145 _1322 HP15_1323: HP15_1323 - hypothetical protein, at 1,387,201 to 1,387,356 _1323 HP15_1324: HP15_1324 - metallo-beta-lactamase family protein, at 1,387,378 to 1,388,553 _1324 Position (kb) 1386 1387 1388Strain fitness (log2 ratio) -2 -1 0 1at 1385.308 kb on + strand, within HP15_1321at 1385.850 kb on + strandat 1385.908 kb on + strandat 1385.919 kb on + strandat 1385.948 kb on - strandat 1386.046 kb on + strandat 1386.046 kb on + strandat 1386.046 kb on + strandat 1386.054 kb on - strandat 1386.056 kb on + strandat 1386.064 kb on - strandat 1386.201 kb on + strandat 1386.203 kb on + strandat 1386.267 kb on - strandat 1386.372 kb on + strand, within HP15_1322at 1386.372 kb on + strand, within HP15_1322at 1386.434 kb on + strand, within HP15_1322at 1386.457 kb on - strand, within HP15_1322at 1386.477 kb on - strand, within HP15_1322at 1386.500 kb on + strand, within HP15_1322at 1386.532 kb on - strand, within HP15_1322at 1386.562 kb on - strand, within HP15_1322at 1386.574 kb on + strand, within HP15_1322at 1386.663 kb on - strand, within HP15_1322at 1386.740 kb on + strand, within HP15_1322at 1386.761 kb on - strand, within HP15_1322at 1386.780 kb on - strand, within HP15_1322at 1386.802 kb on + strand, within HP15_1322at 1386.810 kb on - strand, within HP15_1322at 1386.946 kb on + strand, within HP15_1322at 1387.221 kb on - strand, within HP15_1323at 1387.258 kb on - strand, within HP15_1323at 1387.265 kb on + strand, within HP15_1323at 1387.539 kb on + strand, within HP15_1324at 1387.550 kb on + strand, within HP15_1324at 1387.552 kb on - strand, within HP15_1324at 1387.615 kb on - strand, within HP15_1324at 1387.756 kb on - strand, within HP15_1324at 1387.917 kb on - strand, within HP15_1324at 1387.958 kb on + strand, within HP15_1324at 1387.995 kb on - strand, within HP15_1324at 1388.077 kb on - strand, within HP15_1324at 1388.077 kb on - strand, within HP15_1324at 1388.079 kb on + strand, within HP15_1324at 1388.122 kb on - strand, within HP15_1324

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.004 mg/ml
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1,385,308 + HP15_1321 0.82 +0.3
1,385,850 + -0.9
1,385,908 + +0.5
1,385,919 + +0.3
1,385,948 - +0.3
1,386,046 + -0.4
1,386,046 + -0.2
1,386,046 + +0.2
1,386,054 - -0.5
1,386,056 + +0.1
1,386,064 - -0.2
1,386,201 + +1.1
1,386,203 + -0.9
1,386,267 - +0.0
1,386,372 + HP15_1322 0.13 -1.3
1,386,372 + HP15_1322 0.13 -0.7
1,386,434 + HP15_1322 0.20 -0.1
1,386,457 - HP15_1322 0.23 +0.0
1,386,477 - HP15_1322 0.25 +1.0
1,386,500 + HP15_1322 0.28 -0.3
1,386,532 - HP15_1322 0.31 -0.5
1,386,562 - HP15_1322 0.35 +0.0
1,386,574 + HP15_1322 0.36 -1.9
1,386,663 - HP15_1322 0.46 +1.1
1,386,740 + HP15_1322 0.55 +0.7
1,386,761 - HP15_1322 0.57 -0.3
1,386,780 - HP15_1322 0.59 -0.4
1,386,802 + HP15_1322 0.62 -0.3
1,386,810 - HP15_1322 0.62 -0.3
1,386,946 + HP15_1322 0.78 -0.3
1,387,221 - HP15_1323 0.13 +0.4
1,387,258 - HP15_1323 0.37 -0.2
1,387,265 + HP15_1323 0.41 +0.8
1,387,539 + HP15_1324 0.14 -0.3
1,387,550 + HP15_1324 0.15 -0.9
1,387,552 - HP15_1324 0.15 -1.3
1,387,615 - HP15_1324 0.20 +0.0
1,387,756 - HP15_1324 0.32 -0.1
1,387,917 - HP15_1324 0.46 +1.7
1,387,958 + HP15_1324 0.49 -0.1
1,387,995 - HP15_1324 0.52 +0.4
1,388,077 - HP15_1324 0.59 -0.1
1,388,077 - HP15_1324 0.59 +0.2
1,388,079 + HP15_1324 0.60 -0.2
1,388,122 - HP15_1324 0.63 +0.6

Or see this region's nucleotide sequence