Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c01200

Experiment: m.b. Fusidic 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c01180 and PGA1_c01190 are separated by 9 nucleotidesPGA1_c01190 and PGA1_c01200 are separated by 0 nucleotidesPGA1_c01200 and PGA1_c01210 are separated by 34 nucleotides PGA1_c01180: PGA1_c01180 - Predicted P-loop-containing kinase, at 111,462 to 112,352 _c01180 PGA1_c01190: PGA1_c01190 - putative PTS system fructose subfamily IIA component, at 112,362 to 112,769 _c01190 PGA1_c01200: PGA1_c01200 - putative phosphocarrier, HPr family, at 112,770 to 113,039 _c01200 PGA1_c01210: PGA1_c01210 - Putative hemolysin, at 113,074 to 113,964 _c01210 Position (kb) 112 113 114Strain fitness (log2 ratio) -2 -1 0 1 2at 111.802 kb on + strand, within PGA1_c01180at 111.810 kb on - strand, within PGA1_c01180at 111.861 kb on - strand, within PGA1_c01180at 111.954 kb on + strand, within PGA1_c01180at 111.968 kb on + strand, within PGA1_c01180at 111.968 kb on + strand, within PGA1_c01180at 111.968 kb on + strand, within PGA1_c01180at 111.968 kb on + strand, within PGA1_c01180at 111.968 kb on + strand, within PGA1_c01180at 111.968 kb on + strand, within PGA1_c01180at 111.968 kb on + strand, within PGA1_c01180at 111.968 kb on + strand, within PGA1_c01180at 111.968 kb on + strand, within PGA1_c01180at 111.968 kb on + strand, within PGA1_c01180at 111.975 kb on + strand, within PGA1_c01180at 111.976 kb on - strand, within PGA1_c01180at 111.976 kb on - strand, within PGA1_c01180at 111.976 kb on - strand, within PGA1_c01180at 111.976 kb on - strand, within PGA1_c01180at 111.976 kb on - strand, within PGA1_c01180at 112.058 kb on + strand, within PGA1_c01180at 112.060 kb on - strand, within PGA1_c01180at 112.084 kb on + strand, within PGA1_c01180at 112.084 kb on + strand, within PGA1_c01180at 112.084 kb on + strand, within PGA1_c01180at 112.084 kb on + strand, within PGA1_c01180at 112.084 kb on + strand, within PGA1_c01180at 112.084 kb on + strand, within PGA1_c01180at 112.084 kb on + strand, within PGA1_c01180at 112.084 kb on + strand, within PGA1_c01180at 112.084 kb on + strand, within PGA1_c01180at 112.087 kb on - strand, within PGA1_c01180at 112.092 kb on - strand, within PGA1_c01180at 112.092 kb on - strand, within PGA1_c01180at 112.092 kb on - strand, within PGA1_c01180at 112.104 kb on + strand, within PGA1_c01180at 112.112 kb on + strand, within PGA1_c01180at 112.122 kb on + strand, within PGA1_c01180at 112.242 kb on + strand, within PGA1_c01180at 112.250 kb on - strand, within PGA1_c01180at 112.255 kb on - strand, within PGA1_c01180at 112.263 kb on - strand, within PGA1_c01180at 112.300 kb on + strandat 112.308 kb on - strandat 112.312 kb on + strandat 112.781 kb on - strandat 112.835 kb on + strand, within PGA1_c01200at 112.835 kb on + strand, within PGA1_c01200at 112.872 kb on - strand, within PGA1_c01200at 112.933 kb on + strand, within PGA1_c01200at 112.988 kb on + strand, within PGA1_c01200at 113.035 kb on + strandat 113.063 kb on + strandat 113.063 kb on + strandat 113.063 kb on + strandat 113.071 kb on - strandat 113.071 kb on - strandat 113.105 kb on - strandat 113.117 kb on + strandat 113.117 kb on + strandat 113.217 kb on + strand, within PGA1_c01210at 113.265 kb on + strand, within PGA1_c01210at 113.349 kb on + strand, within PGA1_c01210at 113.357 kb on - strand, within PGA1_c01210at 113.372 kb on + strand, within PGA1_c01210at 113.441 kb on - strand, within PGA1_c01210at 113.457 kb on - strand, within PGA1_c01210at 113.474 kb on + strand, within PGA1_c01210at 113.479 kb on + strand, within PGA1_c01210at 113.482 kb on - strand, within PGA1_c01210at 113.507 kb on - strand, within PGA1_c01210at 113.571 kb on - strand, within PGA1_c01210at 113.814 kb on + strand, within PGA1_c01210at 113.912 kb on + strandat 113.950 kb on + strandat 114.027 kb on - strandat 114.027 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
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111,802 + PGA1_c01180 0.38 +0.9
111,810 - PGA1_c01180 0.39 +0.4
111,861 - PGA1_c01180 0.45 +0.2
111,954 + PGA1_c01180 0.55 -0.2
111,968 + PGA1_c01180 0.57 +1.0
111,968 + PGA1_c01180 0.57 +0.7
111,968 + PGA1_c01180 0.57 +1.1
111,968 + PGA1_c01180 0.57 -0.2
111,968 + PGA1_c01180 0.57 +0.6
111,968 + PGA1_c01180 0.57 +0.9
111,968 + PGA1_c01180 0.57 +0.1
111,968 + PGA1_c01180 0.57 +0.6
111,968 + PGA1_c01180 0.57 +0.0
111,968 + PGA1_c01180 0.57 -0.0
111,975 + PGA1_c01180 0.58 -0.6
111,976 - PGA1_c01180 0.58 -0.8
111,976 - PGA1_c01180 0.58 +0.4
111,976 - PGA1_c01180 0.58 +0.5
111,976 - PGA1_c01180 0.58 -1.0
111,976 - PGA1_c01180 0.58 +0.2
112,058 + PGA1_c01180 0.67 -0.3
112,060 - PGA1_c01180 0.67 +0.2
112,084 + PGA1_c01180 0.70 +0.8
112,084 + PGA1_c01180 0.70 -1.1
112,084 + PGA1_c01180 0.70 +0.3
112,084 + PGA1_c01180 0.70 +1.3
112,084 + PGA1_c01180 0.70 -0.2
112,084 + PGA1_c01180 0.70 +0.7
112,084 + PGA1_c01180 0.70 +0.3
112,084 + PGA1_c01180 0.70 +0.4
112,084 + PGA1_c01180 0.70 -0.4
112,087 - PGA1_c01180 0.70 -0.5
112,092 - PGA1_c01180 0.71 -0.7
112,092 - PGA1_c01180 0.71 +0.6
112,092 - PGA1_c01180 0.71 -0.2
112,104 + PGA1_c01180 0.72 -1.2
112,112 + PGA1_c01180 0.73 -0.8
112,122 + PGA1_c01180 0.74 +0.5
112,242 + PGA1_c01180 0.88 +0.1
112,250 - PGA1_c01180 0.88 -0.3
112,255 - PGA1_c01180 0.89 -1.9
112,263 - PGA1_c01180 0.90 -0.0
112,300 + +0.7
112,308 - -1.3
112,312 + -0.1
112,781 - -0.9
112,835 + PGA1_c01200 0.24 +0.0
112,835 + PGA1_c01200 0.24 -0.6
112,872 - PGA1_c01200 0.38 -0.9
112,933 + PGA1_c01200 0.60 -1.1
112,988 + PGA1_c01200 0.81 -0.3
113,035 + -0.4
113,063 + -1.0
113,063 + +1.8
113,063 + +0.3
113,071 - +0.2
113,071 - -0.5
113,105 - +0.4
113,117 + +0.2
113,117 + +0.5
113,217 + PGA1_c01210 0.16 +0.7
113,265 + PGA1_c01210 0.21 -0.4
113,349 + PGA1_c01210 0.31 +0.2
113,357 - PGA1_c01210 0.32 +0.4
113,372 + PGA1_c01210 0.33 +0.1
113,441 - PGA1_c01210 0.41 -0.3
113,457 - PGA1_c01210 0.43 +0.7
113,474 + PGA1_c01210 0.45 +0.5
113,479 + PGA1_c01210 0.45 +0.2
113,482 - PGA1_c01210 0.46 +0.0
113,507 - PGA1_c01210 0.49 +0.7
113,571 - PGA1_c01210 0.56 -0.4
113,814 + PGA1_c01210 0.83 +0.5
113,912 + -0.7
113,950 + +0.2
114,027 - -0.0
114,027 - -0.8

Or see this region's nucleotide sequence