Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.978.1 and Xcc-8004.979.1 are separated by 95 nucleotides Xcc-8004.979.1 and Xcc-8004.980.1 are separated by 1 nucleotides Xcc-8004.980.1 and Xcc-8004.981.1 overlap by 37 nucleotides Xcc-8004.981.1 and Xcc-8004.982.1 are separated by 63 nucleotides
Xcc-8004.978.1: Xcc-8004.978.1 - C4-dicarboxylate transporter/malic acid transport protein, at 929,516 to 930,697
Xcc-8004.978.1
Xcc-8004.979.1: Xcc-8004.979.1 - LysR family transcriptional regulator YeiE, at 930,793 to 931,707
Xcc-8004.979.1
Xcc-8004.980.1: Xcc-8004.980.1 - hypothetical protein, at 931,709 to 931,951
Xcc-8004.980.1
Xcc-8004.981.1: Xcc-8004.981.1 - FrmR: Negative transcriptional regulator of formaldehyde detoxification operon, at 931,915 to 932,190
Xcc-8004.981.1
Xcc-8004.982.1: Xcc-8004.982.1 - S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284), at 932,254 to 933,363
Xcc-8004.982.1
Position (kb) 930
931
932 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 929.921 kb on + strand, within Xcc-8004.978.1 at 929.921 kb on + strand, within Xcc-8004.978.1 at 929.922 kb on - strand, within Xcc-8004.978.1 at 930.060 kb on + strand, within Xcc-8004.978.1 at 930.177 kb on - strand, within Xcc-8004.978.1 at 930.183 kb on - strand, within Xcc-8004.978.1 at 930.183 kb on - strand, within Xcc-8004.978.1 at 930.220 kb on + strand, within Xcc-8004.978.1 at 930.232 kb on - strand, within Xcc-8004.978.1 at 930.330 kb on + strand, within Xcc-8004.978.1 at 930.331 kb on - strand, within Xcc-8004.978.1 at 930.331 kb on - strand, within Xcc-8004.978.1 at 930.373 kb on + strand, within Xcc-8004.978.1 at 930.373 kb on + strand, within Xcc-8004.978.1 at 930.453 kb on + strand, within Xcc-8004.978.1 at 930.453 kb on + strand, within Xcc-8004.978.1 at 930.454 kb on - strand, within Xcc-8004.978.1 at 930.454 kb on - strand, within Xcc-8004.978.1 at 930.454 kb on - strand, within Xcc-8004.978.1 at 930.454 kb on - strand, within Xcc-8004.978.1 at 930.728 kb on + strand at 930.728 kb on + strand at 930.729 kb on - strand at 930.729 kb on - strand at 930.760 kb on + strand at 930.772 kb on + strand at 930.926 kb on + strand, within Xcc-8004.979.1 at 930.926 kb on + strand, within Xcc-8004.979.1 at 930.927 kb on - strand, within Xcc-8004.979.1 at 930.927 kb on - strand, within Xcc-8004.979.1 at 931.108 kb on + strand, within Xcc-8004.979.1 at 931.108 kb on + strand, within Xcc-8004.979.1 at 931.109 kb on - strand, within Xcc-8004.979.1 at 931.109 kb on - strand, within Xcc-8004.979.1 at 931.140 kb on + strand, within Xcc-8004.979.1 at 931.699 kb on - strand at 931.753 kb on + strand, within Xcc-8004.980.1 at 931.753 kb on + strand, within Xcc-8004.980.1 at 931.753 kb on + strand, within Xcc-8004.980.1 at 931.753 kb on + strand, within Xcc-8004.980.1 at 931.753 kb on + strand, within Xcc-8004.980.1 at 931.753 kb on + strand, within Xcc-8004.980.1 at 931.753 kb on + strand, within Xcc-8004.980.1 at 931.753 kb on + strand, within Xcc-8004.980.1 at 931.754 kb on - strand, within Xcc-8004.980.1 at 931.754 kb on - strand, within Xcc-8004.980.1 at 931.754 kb on - strand, within Xcc-8004.980.1 at 931.754 kb on - strand, within Xcc-8004.980.1 at 931.754 kb on - strand, within Xcc-8004.980.1 at 931.818 kb on + strand, within Xcc-8004.980.1 at 931.818 kb on + strand, within Xcc-8004.980.1 at 931.819 kb on - strand, within Xcc-8004.980.1 at 931.819 kb on - strand, within Xcc-8004.980.1 at 931.880 kb on + strand, within Xcc-8004.980.1 at 931.880 kb on + strand, within Xcc-8004.980.1 at 931.882 kb on + strand, within Xcc-8004.980.1 at 932.007 kb on - strand, within Xcc-8004.981.1 at 932.081 kb on + strand, within Xcc-8004.981.1 at 932.082 kb on - strand, within Xcc-8004.981.1 at 932.095 kb on - strand, within Xcc-8004.981.1 at 932.180 kb on - strand at 932.180 kb on - strand at 932.180 kb on - strand at 932.415 kb on + strand, within Xcc-8004.982.1 at 932.416 kb on - strand, within Xcc-8004.982.1 at 932.515 kb on + strand, within Xcc-8004.982.1 at 932.515 kb on + strand, within Xcc-8004.982.1 at 932.515 kb on + strand, within Xcc-8004.982.1 at 932.515 kb on + strand, within Xcc-8004.982.1 at 932.516 kb on - strand, within Xcc-8004.982.1 at 932.516 kb on - strand, within Xcc-8004.982.1 at 932.516 kb on - strand, within Xcc-8004.982.1 at 932.633 kb on - strand, within Xcc-8004.982.1 at 932.656 kb on + strand, within Xcc-8004.982.1 at 932.656 kb on + strand, within Xcc-8004.982.1 at 932.656 kb on + strand, within Xcc-8004.982.1 at 932.656 kb on + strand, within Xcc-8004.982.1 at 932.656 kb on + strand, within Xcc-8004.982.1 at 932.656 kb on + strand, within Xcc-8004.982.1 at 932.656 kb on + strand, within Xcc-8004.982.1 at 932.656 kb on + strand, within Xcc-8004.982.1 at 932.657 kb on - strand, within Xcc-8004.982.1 at 932.657 kb on - strand, within Xcc-8004.982.1 at 932.683 kb on + strand, within Xcc-8004.982.1 at 932.683 kb on + strand, within Xcc-8004.982.1 at 932.684 kb on - strand, within Xcc-8004.982.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 929,921 + Xcc-8004.978.1 0.34 -0.6 929,921 + Xcc-8004.978.1 0.34 -1.8 929,922 - Xcc-8004.978.1 0.34 +2.7 930,060 + Xcc-8004.978.1 0.46 +0.6 930,177 - Xcc-8004.978.1 0.56 -0.1 930,183 - Xcc-8004.978.1 0.56 +1.2 930,183 - Xcc-8004.978.1 0.56 +1.6 930,220 + Xcc-8004.978.1 0.60 -0.3 930,232 - Xcc-8004.978.1 0.61 -0.6 930,330 + Xcc-8004.978.1 0.69 -0.4 930,331 - Xcc-8004.978.1 0.69 +6.1 930,331 - Xcc-8004.978.1 0.69 +0.3 930,373 + Xcc-8004.978.1 0.73 +1.1 930,373 + Xcc-8004.978.1 0.73 -2.2 930,453 + Xcc-8004.978.1 0.79 +1.9 930,453 + Xcc-8004.978.1 0.79 -0.6 930,454 - Xcc-8004.978.1 0.79 +0.4 930,454 - Xcc-8004.978.1 0.79 -1.3 930,454 - Xcc-8004.978.1 0.79 -0.2 930,454 - Xcc-8004.978.1 0.79 -0.5 930,728 + +4.2 930,728 + +0.9 930,729 - -1.8 930,729 - -0.0 930,760 + +1.3 930,772 + -0.3 930,926 + Xcc-8004.979.1 0.15 -0.7 930,926 + Xcc-8004.979.1 0.15 -1.4 930,927 - Xcc-8004.979.1 0.15 +0.4 930,927 - Xcc-8004.979.1 0.15 +0.8 931,108 + Xcc-8004.979.1 0.34 -1.0 931,108 + Xcc-8004.979.1 0.34 +1.7 931,109 - Xcc-8004.979.1 0.35 +0.7 931,109 - Xcc-8004.979.1 0.35 +0.8 931,140 + Xcc-8004.979.1 0.38 +0.1 931,699 - -1.6 931,753 + Xcc-8004.980.1 0.18 +0.6 931,753 + Xcc-8004.980.1 0.18 +0.2 931,753 + Xcc-8004.980.1 0.18 +1.0 931,753 + Xcc-8004.980.1 0.18 +1.6 931,753 + Xcc-8004.980.1 0.18 -2.6 931,753 + Xcc-8004.980.1 0.18 +0.1 931,753 + Xcc-8004.980.1 0.18 -1.8 931,753 + Xcc-8004.980.1 0.18 +0.0 931,754 - Xcc-8004.980.1 0.19 -1.0 931,754 - Xcc-8004.980.1 0.19 +0.4 931,754 - Xcc-8004.980.1 0.19 -0.3 931,754 - Xcc-8004.980.1 0.19 -0.9 931,754 - Xcc-8004.980.1 0.19 -0.1 931,818 + Xcc-8004.980.1 0.45 +1.7 931,818 + Xcc-8004.980.1 0.45 +1.0 931,819 - Xcc-8004.980.1 0.45 +2.0 931,819 - Xcc-8004.980.1 0.45 -0.2 931,880 + Xcc-8004.980.1 0.70 -0.6 931,880 + Xcc-8004.980.1 0.70 +0.9 931,882 + Xcc-8004.980.1 0.71 +1.1 932,007 - Xcc-8004.981.1 0.33 -1.5 932,081 + Xcc-8004.981.1 0.60 -1.2 932,082 - Xcc-8004.981.1 0.61 -1.3 932,095 - Xcc-8004.981.1 0.65 +1.0 932,180 - +0.4 932,180 - -0.5 932,180 - +0.4 932,415 + Xcc-8004.982.1 0.15 +0.4 932,416 - Xcc-8004.982.1 0.15 +0.6 932,515 + Xcc-8004.982.1 0.24 -1.4 932,515 + Xcc-8004.982.1 0.24 +0.1 932,515 + Xcc-8004.982.1 0.24 -2.1 932,515 + Xcc-8004.982.1 0.24 -2.0 932,516 - Xcc-8004.982.1 0.24 -0.2 932,516 - Xcc-8004.982.1 0.24 +0.5 932,516 - Xcc-8004.982.1 0.24 +0.9 932,633 - Xcc-8004.982.1 0.34 -1.8 932,656 + Xcc-8004.982.1 0.36 -1.3 932,656 + Xcc-8004.982.1 0.36 -1.0 932,656 + Xcc-8004.982.1 0.36 -0.9 932,656 + Xcc-8004.982.1 0.36 -1.3 932,656 + Xcc-8004.982.1 0.36 +1.8 932,656 + Xcc-8004.982.1 0.36 -0.1 932,656 + Xcc-8004.982.1 0.36 -0.3 932,656 + Xcc-8004.982.1 0.36 +1.9 932,657 - Xcc-8004.982.1 0.36 -3.0 932,657 - Xcc-8004.982.1 0.36 +0.9 932,683 + Xcc-8004.982.1 0.39 -2.6 932,683 + Xcc-8004.982.1 0.39 +0.7 932,684 - Xcc-8004.982.1 0.39 +0.1
Or see this region's nucleotide sequence