Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.679.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.678.1 and Xcc-8004.679.1 are separated by 42 nucleotidesXcc-8004.679.1 and Xcc-8004.680.1 are separated by 17 nucleotidesXcc-8004.680.1 and Xcc-8004.681.1 are separated by 79 nucleotides Xcc-8004.678.1: Xcc-8004.678.1 - Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14), at 623,239 to 624,606 Xcc-8004.678.1 Xcc-8004.679.1: Xcc-8004.679.1 - 23Sr RNA gene, at 624,649 to 625,035 Xcc-8004.679.1 Xcc-8004.680.1: Xcc-8004.680.1 - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, at 625,053 to 625,535 Xcc-8004.680.1 Xcc-8004.681.1: Xcc-8004.681.1 - 3-dehydroquinate dehydratase II (EC 4.2.1.10), at 625,615 to 626,061 Xcc-8004.681.1 Position (kb) 624 625 626Strain fitness (log2 ratio) -2 -1 0 1 2at 624.638 kb on - strandat 624.818 kb on - strand, within Xcc-8004.679.1at 624.818 kb on - strand, within Xcc-8004.679.1at 624.831 kb on - strand, within Xcc-8004.679.1at 624.954 kb on - strand, within Xcc-8004.679.1at 624.954 kb on - strand, within Xcc-8004.679.1at 625.716 kb on - strand, within Xcc-8004.681.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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624,638 - +0.4
624,818 - Xcc-8004.679.1 0.44 +0.7
624,818 - Xcc-8004.679.1 0.44 +2.7
624,831 - Xcc-8004.679.1 0.47 -1.8
624,954 - Xcc-8004.679.1 0.79 +0.4
624,954 - Xcc-8004.679.1 0.79 +1.2
625,716 - Xcc-8004.681.1 0.23 -1.9

Or see this region's nucleotide sequence