Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4671.1 and Xcc-8004.4672.1 are separated by 53 nucleotides Xcc-8004.4672.1 and Xcc-8004.4673.1 are separated by 110 nucleotides Xcc-8004.4673.1 and Xcc-8004.4674.1 overlap by 10 nucleotides
Xcc-8004.4671.1: Xcc-8004.4671.1 - FIG01212254: hypothetical protein, at 4,451,464 to 4,451,760
Xcc-8004.4671.1
Xcc-8004.4672.1: Xcc-8004.4672.1 - hypothetical protein, at 4,451,814 to 4,451,921
Xcc-8004.4672.1
Xcc-8004.4673.1: Xcc-8004.4673.1 - putative Cytochrome bd2, subunit I, at 4,452,032 to 4,453,441
Xcc-8004.4673.1
Xcc-8004.4674.1: Xcc-8004.4674.1 - putative Cytochrome bd2, subunit II, at 4,453,432 to 4,454,451
Xcc-8004.4674.1
Position (kb) 4452
4453
4454 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4451.072 kb on - strand at 4451.119 kb on + strand at 4451.119 kb on + strand at 4451.119 kb on + strand at 4451.119 kb on + strand at 4451.120 kb on - strand at 4451.180 kb on + strand at 4451.181 kb on - strand at 4451.358 kb on + strand at 4451.358 kb on + strand at 4451.358 kb on + strand at 4451.359 kb on - strand at 4451.369 kb on + strand at 4451.370 kb on - strand at 4451.395 kb on + strand at 4451.395 kb on + strand at 4451.395 kb on + strand at 4451.395 kb on + strand at 4451.395 kb on + strand at 4451.396 kb on - strand at 4451.396 kb on - strand at 4451.566 kb on + strand, within Xcc-8004.4671.1 at 4451.566 kb on + strand, within Xcc-8004.4671.1 at 4451.567 kb on - strand, within Xcc-8004.4671.1 at 4451.567 kb on - strand, within Xcc-8004.4671.1 at 4451.567 kb on - strand, within Xcc-8004.4671.1 at 4451.567 kb on - strand, within Xcc-8004.4671.1 at 4451.570 kb on - strand, within Xcc-8004.4671.1 at 4451.874 kb on + strand, within Xcc-8004.4672.1 at 4451.874 kb on + strand, within Xcc-8004.4672.1 at 4451.875 kb on - strand, within Xcc-8004.4672.1 at 4451.875 kb on - strand, within Xcc-8004.4672.1 at 4451.875 kb on - strand, within Xcc-8004.4672.1 at 4452.019 kb on + strand at 4452.020 kb on - strand at 4452.168 kb on + strand at 4452.168 kb on + strand at 4452.168 kb on + strand at 4452.168 kb on + strand at 4452.169 kb on - strand at 4452.169 kb on - strand at 4452.169 kb on - strand at 4452.169 kb on - strand at 4452.169 kb on - strand at 4452.169 kb on - strand at 4452.182 kb on + strand, within Xcc-8004.4673.1 at 4452.182 kb on + strand, within Xcc-8004.4673.1 at 4452.183 kb on - strand, within Xcc-8004.4673.1 at 4452.183 kb on - strand, within Xcc-8004.4673.1 at 4452.183 kb on - strand, within Xcc-8004.4673.1 at 4452.183 kb on - strand, within Xcc-8004.4673.1 at 4452.183 kb on - strand, within Xcc-8004.4673.1 at 4452.183 kb on - strand, within Xcc-8004.4673.1 at 4452.320 kb on + strand, within Xcc-8004.4673.1 at 4452.320 kb on + strand, within Xcc-8004.4673.1 at 4452.320 kb on + strand, within Xcc-8004.4673.1 at 4452.321 kb on - strand, within Xcc-8004.4673.1 at 4452.321 kb on - strand, within Xcc-8004.4673.1 at 4452.321 kb on - strand, within Xcc-8004.4673.1 at 4452.321 kb on - strand, within Xcc-8004.4673.1 at 4452.321 kb on - strand, within Xcc-8004.4673.1 at 4452.321 kb on - strand, within Xcc-8004.4673.1 at 4452.321 kb on - strand, within Xcc-8004.4673.1 at 4452.321 kb on - strand, within Xcc-8004.4673.1 at 4452.321 kb on - strand, within Xcc-8004.4673.1 at 4452.580 kb on + strand, within Xcc-8004.4673.1 at 4452.581 kb on - strand, within Xcc-8004.4673.1 at 4452.635 kb on + strand, within Xcc-8004.4673.1 at 4452.635 kb on + strand, within Xcc-8004.4673.1 at 4452.635 kb on + strand, within Xcc-8004.4673.1 at 4452.635 kb on + strand, within Xcc-8004.4673.1 at 4452.636 kb on - strand, within Xcc-8004.4673.1 at 4452.636 kb on - strand, within Xcc-8004.4673.1 at 4452.636 kb on - strand, within Xcc-8004.4673.1 at 4452.638 kb on + strand, within Xcc-8004.4673.1 at 4452.638 kb on + strand, within Xcc-8004.4673.1 at 4452.639 kb on - strand, within Xcc-8004.4673.1 at 4452.639 kb on - strand, within Xcc-8004.4673.1 at 4452.639 kb on - strand, within Xcc-8004.4673.1 at 4452.878 kb on + strand, within Xcc-8004.4673.1 at 4452.878 kb on + strand, within Xcc-8004.4673.1 at 4452.878 kb on + strand, within Xcc-8004.4673.1 at 4452.878 kb on + strand, within Xcc-8004.4673.1 at 4452.879 kb on - strand, within Xcc-8004.4673.1 at 4453.181 kb on + strand, within Xcc-8004.4673.1 at 4453.181 kb on + strand, within Xcc-8004.4673.1 at 4453.181 kb on + strand, within Xcc-8004.4673.1 at 4453.181 kb on + strand, within Xcc-8004.4673.1 at 4453.181 kb on + strand, within Xcc-8004.4673.1 at 4453.181 kb on + strand, within Xcc-8004.4673.1 at 4453.181 kb on + strand, within Xcc-8004.4673.1 at 4453.181 kb on + strand, within Xcc-8004.4673.1 at 4453.181 kb on + strand, within Xcc-8004.4673.1 at 4453.181 kb on + strand, within Xcc-8004.4673.1 at 4453.181 kb on + strand, within Xcc-8004.4673.1 at 4453.182 kb on - strand, within Xcc-8004.4673.1 at 4453.182 kb on - strand, within Xcc-8004.4673.1 at 4453.182 kb on - strand, within Xcc-8004.4673.1 at 4453.182 kb on - strand, within Xcc-8004.4673.1 at 4453.182 kb on - strand, within Xcc-8004.4673.1 at 4453.182 kb on - strand, within Xcc-8004.4673.1 at 4453.182 kb on - strand, within Xcc-8004.4673.1 at 4453.182 kb on - strand, within Xcc-8004.4673.1 at 4453.182 kb on - strand, within Xcc-8004.4673.1 at 4453.182 kb on - strand, within Xcc-8004.4673.1 at 4453.182 kb on - strand, within Xcc-8004.4673.1 at 4453.182 kb on - strand, within Xcc-8004.4673.1 at 4453.190 kb on + strand, within Xcc-8004.4673.1 at 4453.191 kb on - strand, within Xcc-8004.4673.1 at 4453.262 kb on + strand, within Xcc-8004.4673.1 at 4453.263 kb on - strand, within Xcc-8004.4673.1 at 4453.274 kb on + strand, within Xcc-8004.4673.1 at 4453.274 kb on + strand, within Xcc-8004.4673.1 at 4453.304 kb on + strand at 4453.305 kb on - strand at 4453.495 kb on + strand at 4453.495 kb on + strand at 4453.495 kb on + strand at 4453.495 kb on + strand at 4453.495 kb on + strand at 4453.495 kb on + strand at 4453.495 kb on + strand at 4453.495 kb on + strand at 4453.495 kb on + strand at 4453.495 kb on + strand at 4453.495 kb on + strand at 4453.495 kb on + strand at 4453.496 kb on - strand at 4453.496 kb on - strand at 4453.496 kb on - strand at 4453.496 kb on - strand at 4453.496 kb on - strand at 4453.496 kb on - strand at 4453.518 kb on - strand at 4453.663 kb on + strand, within Xcc-8004.4674.1 at 4453.664 kb on - strand, within Xcc-8004.4674.1 at 4453.664 kb on - strand, within Xcc-8004.4674.1 at 4453.687 kb on + strand, within Xcc-8004.4674.1 at 4453.687 kb on + strand, within Xcc-8004.4674.1 at 4453.687 kb on + strand, within Xcc-8004.4674.1 at 4453.688 kb on - strand, within Xcc-8004.4674.1 at 4453.688 kb on - strand, within Xcc-8004.4674.1 at 4453.688 kb on - strand, within Xcc-8004.4674.1 at 4453.692 kb on - strand, within Xcc-8004.4674.1 at 4453.876 kb on + strand, within Xcc-8004.4674.1 at 4453.876 kb on + strand, within Xcc-8004.4674.1 at 4454.190 kb on + strand, within Xcc-8004.4674.1 at 4454.190 kb on + strand, within Xcc-8004.4674.1 at 4454.190 kb on + strand, within Xcc-8004.4674.1 at 4454.279 kb on - strand, within Xcc-8004.4674.1 at 4454.296 kb on + strand, within Xcc-8004.4674.1 at 4454.297 kb on - strand, within Xcc-8004.4674.1 at 4454.384 kb on - strand at 4454.384 kb on - strand at 4454.385 kb on + strand at 4454.438 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 4,451,072 - -2.1 4,451,119 + +0.5 4,451,119 + -1.7 4,451,119 + +0.9 4,451,119 + +1.8 4,451,120 - -1.5 4,451,180 + +0.9 4,451,181 - +1.6 4,451,358 + +1.2 4,451,358 + +1.0 4,451,358 + -0.3 4,451,359 - -1.5 4,451,369 + -1.1 4,451,370 - -0.5 4,451,395 + -0.3 4,451,395 + -2.0 4,451,395 + +0.2 4,451,395 + +0.7 4,451,395 + -2.3 4,451,396 - -1.1 4,451,396 - -2.7 4,451,566 + Xcc-8004.4671.1 0.34 -0.9 4,451,566 + Xcc-8004.4671.1 0.34 +0.1 4,451,567 - Xcc-8004.4671.1 0.35 -1.0 4,451,567 - Xcc-8004.4671.1 0.35 +1.0 4,451,567 - Xcc-8004.4671.1 0.35 -0.8 4,451,567 - Xcc-8004.4671.1 0.35 -1.9 4,451,570 - Xcc-8004.4671.1 0.36 -0.8 4,451,874 + Xcc-8004.4672.1 0.56 -0.5 4,451,874 + Xcc-8004.4672.1 0.56 -0.8 4,451,875 - Xcc-8004.4672.1 0.56 -0.0 4,451,875 - Xcc-8004.4672.1 0.56 -0.8 4,451,875 - Xcc-8004.4672.1 0.56 +1.1 4,452,019 + +0.3 4,452,020 - +0.6 4,452,168 + +0.8 4,452,168 + -0.0 4,452,168 + +0.8 4,452,168 + -0.1 4,452,169 - -2.6 4,452,169 - -0.8 4,452,169 - -0.0 4,452,169 - -0.1 4,452,169 - -0.6 4,452,169 - +0.3 4,452,182 + Xcc-8004.4673.1 0.11 +0.5 4,452,182 + Xcc-8004.4673.1 0.11 +0.6 4,452,183 - Xcc-8004.4673.1 0.11 -0.2 4,452,183 - Xcc-8004.4673.1 0.11 -0.6 4,452,183 - Xcc-8004.4673.1 0.11 -1.4 4,452,183 - Xcc-8004.4673.1 0.11 +0.6 4,452,183 - Xcc-8004.4673.1 0.11 -0.2 4,452,183 - Xcc-8004.4673.1 0.11 -1.9 4,452,320 + Xcc-8004.4673.1 0.20 -0.1 4,452,320 + Xcc-8004.4673.1 0.20 +2.5 4,452,320 + Xcc-8004.4673.1 0.20 -1.1 4,452,321 - Xcc-8004.4673.1 0.20 -2.6 4,452,321 - Xcc-8004.4673.1 0.20 -1.4 4,452,321 - Xcc-8004.4673.1 0.20 -0.7 4,452,321 - Xcc-8004.4673.1 0.20 -0.5 4,452,321 - Xcc-8004.4673.1 0.20 +0.4 4,452,321 - Xcc-8004.4673.1 0.20 -1.1 4,452,321 - Xcc-8004.4673.1 0.20 -2.5 4,452,321 - Xcc-8004.4673.1 0.20 -2.0 4,452,321 - Xcc-8004.4673.1 0.20 -0.0 4,452,580 + Xcc-8004.4673.1 0.39 -0.6 4,452,581 - Xcc-8004.4673.1 0.39 -0.5 4,452,635 + Xcc-8004.4673.1 0.43 -0.5 4,452,635 + Xcc-8004.4673.1 0.43 -2.6 4,452,635 + Xcc-8004.4673.1 0.43 -2.2 4,452,635 + Xcc-8004.4673.1 0.43 +0.1 4,452,636 - Xcc-8004.4673.1 0.43 -1.6 4,452,636 - Xcc-8004.4673.1 0.43 +0.4 4,452,636 - Xcc-8004.4673.1 0.43 -0.8 4,452,638 + Xcc-8004.4673.1 0.43 -0.5 4,452,638 + Xcc-8004.4673.1 0.43 +0.5 4,452,639 - Xcc-8004.4673.1 0.43 +0.1 4,452,639 - Xcc-8004.4673.1 0.43 -0.8 4,452,639 - Xcc-8004.4673.1 0.43 -0.8 4,452,878 + Xcc-8004.4673.1 0.60 +1.1 4,452,878 + Xcc-8004.4673.1 0.60 -2.7 4,452,878 + Xcc-8004.4673.1 0.60 -0.0 4,452,878 + Xcc-8004.4673.1 0.60 -2.5 4,452,879 - Xcc-8004.4673.1 0.60 -1.4 4,453,181 + Xcc-8004.4673.1 0.81 +0.2 4,453,181 + Xcc-8004.4673.1 0.81 -1.7 4,453,181 + Xcc-8004.4673.1 0.81 -2.6 4,453,181 + Xcc-8004.4673.1 0.81 -0.9 4,453,181 + Xcc-8004.4673.1 0.81 -2.9 4,453,181 + Xcc-8004.4673.1 0.81 -1.4 4,453,181 + Xcc-8004.4673.1 0.81 -0.5 4,453,181 + Xcc-8004.4673.1 0.81 -1.8 4,453,181 + Xcc-8004.4673.1 0.81 -0.2 4,453,181 + Xcc-8004.4673.1 0.81 +0.4 4,453,181 + Xcc-8004.4673.1 0.81 +0.2 4,453,182 - Xcc-8004.4673.1 0.82 +0.8 4,453,182 - Xcc-8004.4673.1 0.82 +0.3 4,453,182 - Xcc-8004.4673.1 0.82 -2.5 4,453,182 - Xcc-8004.4673.1 0.82 +0.4 4,453,182 - Xcc-8004.4673.1 0.82 +0.8 4,453,182 - Xcc-8004.4673.1 0.82 -0.4 4,453,182 - Xcc-8004.4673.1 0.82 +0.8 4,453,182 - Xcc-8004.4673.1 0.82 -2.1 4,453,182 - Xcc-8004.4673.1 0.82 -1.6 4,453,182 - Xcc-8004.4673.1 0.82 +0.7 4,453,182 - Xcc-8004.4673.1 0.82 +0.5 4,453,182 - Xcc-8004.4673.1 0.82 +0.7 4,453,190 + Xcc-8004.4673.1 0.82 -1.2 4,453,191 - Xcc-8004.4673.1 0.82 +0.3 4,453,262 + Xcc-8004.4673.1 0.87 -0.5 4,453,263 - Xcc-8004.4673.1 0.87 +1.2 4,453,274 + Xcc-8004.4673.1 0.88 -0.0 4,453,274 + Xcc-8004.4673.1 0.88 -0.3 4,453,304 + +0.0 4,453,305 - +0.5 4,453,495 + +2.5 4,453,495 + -1.5 4,453,495 + -0.4 4,453,495 + -1.8 4,453,495 + -0.4 4,453,495 + -1.0 4,453,495 + -3.0 4,453,495 + -0.2 4,453,495 + +0.5 4,453,495 + -0.9 4,453,495 + -0.8 4,453,495 + -1.1 4,453,496 - -0.7 4,453,496 - +1.3 4,453,496 - +0.8 4,453,496 - -0.8 4,453,496 - -0.6 4,453,496 - +1.5 4,453,518 - -0.4 4,453,663 + Xcc-8004.4674.1 0.23 +1.4 4,453,664 - Xcc-8004.4674.1 0.23 -1.1 4,453,664 - Xcc-8004.4674.1 0.23 +0.5 4,453,687 + Xcc-8004.4674.1 0.25 +1.8 4,453,687 + Xcc-8004.4674.1 0.25 -0.4 4,453,687 + Xcc-8004.4674.1 0.25 -0.5 4,453,688 - Xcc-8004.4674.1 0.25 +1.2 4,453,688 - Xcc-8004.4674.1 0.25 +0.1 4,453,688 - Xcc-8004.4674.1 0.25 -0.3 4,453,692 - Xcc-8004.4674.1 0.25 +2.7 4,453,876 + Xcc-8004.4674.1 0.44 -0.1 4,453,876 + Xcc-8004.4674.1 0.44 +0.3 4,454,190 + Xcc-8004.4674.1 0.74 +1.2 4,454,190 + Xcc-8004.4674.1 0.74 +0.8 4,454,190 + Xcc-8004.4674.1 0.74 -1.1 4,454,279 - Xcc-8004.4674.1 0.83 -0.8 4,454,296 + Xcc-8004.4674.1 0.85 +2.6 4,454,297 - Xcc-8004.4674.1 0.85 -1.2 4,454,384 - -1.4 4,454,384 - -1.1 4,454,385 + +1.5 4,454,438 - -0.4
Or see this region's nucleotide sequence