Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4232.1 and Xcc-8004.4233.1 overlap by 4 nucleotides Xcc-8004.4233.1 and Xcc-8004.4234.1 are separated by 133 nucleotides Xcc-8004.4234.1 and Xcc-8004.4235.1 overlap by 32 nucleotides
Xcc-8004.4232.1: Xcc-8004.4232.1 - two-component system sensor protein, at 4,056,278 to 4,058,188
Xcc-8004.4232.1
Xcc-8004.4233.1: Xcc-8004.4233.1 - two-component system sensor protein, at 4,058,185 to 4,058,649
Xcc-8004.4233.1
Xcc-8004.4234.1: Xcc-8004.4234.1 - FIG01210050: hypothetical protein, at 4,058,783 to 4,059,046
Xcc-8004.4234.1
Xcc-8004.4235.1: Xcc-8004.4235.1 - hypothetical protein, at 4,059,015 to 4,059,656
Xcc-8004.4235.1
Position (kb) 4058
4059 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4057.461 kb on + strand, within Xcc-8004.4232.1 at 4057.461 kb on + strand, within Xcc-8004.4232.1 at 4057.462 kb on - strand, within Xcc-8004.4232.1 at 4057.462 kb on - strand, within Xcc-8004.4232.1 at 4058.178 kb on + strand at 4058.179 kb on - strand at 4058.389 kb on + strand, within Xcc-8004.4233.1 at 4058.389 kb on + strand, within Xcc-8004.4233.1 at 4058.390 kb on - strand, within Xcc-8004.4233.1 at 4058.390 kb on - strand, within Xcc-8004.4233.1 at 4058.647 kb on + strand at 4058.647 kb on + strand at 4058.648 kb on - strand at 4058.648 kb on - strand at 4058.659 kb on + strand at 4058.660 kb on - strand at 4058.745 kb on + strand at 4058.745 kb on + strand at 4058.745 kb on + strand at 4058.745 kb on + strand at 4058.745 kb on + strand at 4058.746 kb on - strand at 4058.746 kb on - strand at 4058.746 kb on - strand at 4058.746 kb on - strand at 4058.784 kb on + strand at 4058.784 kb on + strand at 4059.094 kb on + strand, within Xcc-8004.4235.1 at 4059.094 kb on + strand, within Xcc-8004.4235.1 at 4059.095 kb on - strand, within Xcc-8004.4235.1 at 4059.115 kb on - strand, within Xcc-8004.4235.1 at 4059.127 kb on + strand, within Xcc-8004.4235.1 at 4059.127 kb on + strand, within Xcc-8004.4235.1 at 4059.127 kb on + strand, within Xcc-8004.4235.1 at 4059.128 kb on - strand, within Xcc-8004.4235.1 at 4059.433 kb on + strand, within Xcc-8004.4235.1 at 4059.433 kb on + strand, within Xcc-8004.4235.1 at 4059.433 kb on + strand, within Xcc-8004.4235.1 at 4059.433 kb on + strand, within Xcc-8004.4235.1 at 4059.434 kb on - strand, within Xcc-8004.4235.1 at 4059.434 kb on - strand, within Xcc-8004.4235.1 at 4059.586 kb on - strand, within Xcc-8004.4235.1 at 4059.586 kb on - strand, within Xcc-8004.4235.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 4,057,461 + Xcc-8004.4232.1 0.62 +0.3 4,057,461 + Xcc-8004.4232.1 0.62 -0.4 4,057,462 - Xcc-8004.4232.1 0.62 -2.1 4,057,462 - Xcc-8004.4232.1 0.62 +2.6 4,058,178 + -1.6 4,058,179 - -0.1 4,058,389 + Xcc-8004.4233.1 0.44 -0.6 4,058,389 + Xcc-8004.4233.1 0.44 +0.6 4,058,390 - Xcc-8004.4233.1 0.44 +2.2 4,058,390 - Xcc-8004.4233.1 0.44 -0.3 4,058,647 + +0.4 4,058,647 + -0.9 4,058,648 - -1.7 4,058,648 - +0.4 4,058,659 + +0.1 4,058,660 - -1.6 4,058,745 + +0.6 4,058,745 + -0.3 4,058,745 + +0.6 4,058,745 + +0.8 4,058,745 + +0.6 4,058,746 - +1.2 4,058,746 - +0.5 4,058,746 - -0.1 4,058,746 - -0.3 4,058,784 + -1.4 4,058,784 + -1.6 4,059,094 + Xcc-8004.4235.1 0.12 +0.5 4,059,094 + Xcc-8004.4235.1 0.12 +1.0 4,059,095 - Xcc-8004.4235.1 0.12 -0.8 4,059,115 - Xcc-8004.4235.1 0.16 +0.1 4,059,127 + Xcc-8004.4235.1 0.17 +1.5 4,059,127 + Xcc-8004.4235.1 0.17 -0.3 4,059,127 + Xcc-8004.4235.1 0.17 +0.6 4,059,128 - Xcc-8004.4235.1 0.18 +1.3 4,059,433 + Xcc-8004.4235.1 0.65 -1.4 4,059,433 + Xcc-8004.4235.1 0.65 +3.7 4,059,433 + Xcc-8004.4235.1 0.65 -0.1 4,059,433 + Xcc-8004.4235.1 0.65 -1.0 4,059,434 - Xcc-8004.4235.1 0.65 +0.2 4,059,434 - Xcc-8004.4235.1 0.65 -0.4 4,059,586 - Xcc-8004.4235.1 0.89 +0.9 4,059,586 - Xcc-8004.4235.1 0.89 +1.3
Or see this region's nucleotide sequence