Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3607.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.3604.1 and Xcc-8004.3605.1 overlap by 4 nucleotidesXcc-8004.3605.1 and Xcc-8004.3607.1 overlap by 4 nucleotidesXcc-8004.3607.1 and Xcc-8004.3608.1 overlap by 4 nucleotidesXcc-8004.3608.1 and Xcc-8004.3609.1 overlap by 4 nucleotides Xcc-8004.3604.1: Xcc-8004.3604.1 - COG2907: Amine oxidase, flavin-containing, at 3,493,294 to 3,494,544 Xcc-8004.3604.1 Xcc-8004.3605.1: Xcc-8004.3605.1 - hypothetical protein, at 3,494,541 to 3,495,422 Xcc-8004.3605.1 Xcc-8004.3607.1: Xcc-8004.3607.1 - S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase, at 3,495,419 to 3,496,714 Xcc-8004.3607.1 Xcc-8004.3608.1: Xcc-8004.3608.1 - FIG024285: Hypothetical protein, at 3,496,711 to 3,497,256 Xcc-8004.3608.1 Xcc-8004.3609.1: Xcc-8004.3609.1 - FIG005069: Hypothetical protein, at 3,497,253 to 3,498,035 Xcc-8004.3609.1 Position (kb) 3495 3496 3497Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3494.643 kb on + strand, within Xcc-8004.3605.1at 3494.643 kb on + strand, within Xcc-8004.3605.1at 3494.643 kb on + strand, within Xcc-8004.3605.1at 3494.643 kb on + strand, within Xcc-8004.3605.1at 3494.643 kb on + strand, within Xcc-8004.3605.1at 3494.644 kb on - strand, within Xcc-8004.3605.1at 3494.644 kb on - strand, within Xcc-8004.3605.1at 3494.644 kb on - strand, within Xcc-8004.3605.1at 3494.644 kb on - strand, within Xcc-8004.3605.1at 3494.644 kb on - strand, within Xcc-8004.3605.1at 3494.715 kb on + strand, within Xcc-8004.3605.1at 3494.716 kb on - strand, within Xcc-8004.3605.1at 3494.716 kb on - strand, within Xcc-8004.3605.1at 3494.916 kb on + strand, within Xcc-8004.3605.1at 3494.917 kb on - strand, within Xcc-8004.3605.1at 3494.929 kb on + strand, within Xcc-8004.3605.1at 3494.929 kb on + strand, within Xcc-8004.3605.1at 3494.929 kb on + strand, within Xcc-8004.3605.1at 3494.929 kb on + strand, within Xcc-8004.3605.1at 3494.929 kb on + strand, within Xcc-8004.3605.1at 3494.929 kb on + strand, within Xcc-8004.3605.1at 3494.929 kb on + strand, within Xcc-8004.3605.1at 3494.929 kb on + strand, within Xcc-8004.3605.1at 3494.930 kb on - strand, within Xcc-8004.3605.1at 3494.930 kb on - strand, within Xcc-8004.3605.1at 3494.930 kb on - strand, within Xcc-8004.3605.1at 3494.949 kb on + strand, within Xcc-8004.3605.1at 3494.949 kb on + strand, within Xcc-8004.3605.1at 3494.949 kb on + strand, within Xcc-8004.3605.1at 3494.949 kb on + strand, within Xcc-8004.3605.1at 3494.950 kb on - strand, within Xcc-8004.3605.1at 3494.950 kb on - strand, within Xcc-8004.3605.1at 3494.950 kb on - strand, within Xcc-8004.3605.1at 3494.952 kb on + strand, within Xcc-8004.3605.1at 3494.952 kb on + strand, within Xcc-8004.3605.1at 3494.952 kb on + strand, within Xcc-8004.3605.1at 3494.952 kb on + strand, within Xcc-8004.3605.1at 3494.953 kb on - strand, within Xcc-8004.3605.1at 3494.953 kb on - strand, within Xcc-8004.3605.1at 3495.030 kb on + strand, within Xcc-8004.3605.1at 3495.030 kb on + strand, within Xcc-8004.3605.1at 3495.030 kb on + strand, within Xcc-8004.3605.1at 3495.030 kb on + strand, within Xcc-8004.3605.1at 3495.030 kb on + strand, within Xcc-8004.3605.1at 3495.030 kb on + strand, within Xcc-8004.3605.1at 3495.030 kb on + strand, within Xcc-8004.3605.1at 3495.030 kb on + strand, within Xcc-8004.3605.1at 3495.030 kb on + strand, within Xcc-8004.3605.1at 3495.030 kb on + strand, within Xcc-8004.3605.1at 3495.030 kb on + strand, within Xcc-8004.3605.1at 3495.030 kb on + strand, within Xcc-8004.3605.1at 3495.031 kb on - strand, within Xcc-8004.3605.1at 3495.031 kb on - strand, within Xcc-8004.3605.1at 3495.031 kb on - strand, within Xcc-8004.3605.1at 3495.031 kb on - strand, within Xcc-8004.3605.1at 3495.031 kb on - strand, within Xcc-8004.3605.1at 3495.132 kb on + strand, within Xcc-8004.3605.1at 3495.133 kb on - strand, within Xcc-8004.3605.1at 3495.133 kb on - strand, within Xcc-8004.3605.1at 3495.671 kb on + strand, within Xcc-8004.3607.1at 3495.671 kb on + strand, within Xcc-8004.3607.1at 3495.671 kb on + strand, within Xcc-8004.3607.1at 3495.671 kb on + strand, within Xcc-8004.3607.1at 3495.672 kb on - strand, within Xcc-8004.3607.1at 3495.672 kb on - strand, within Xcc-8004.3607.1at 3495.672 kb on - strand, within Xcc-8004.3607.1at 3495.802 kb on + strand, within Xcc-8004.3607.1at 3495.854 kb on + strand, within Xcc-8004.3607.1at 3495.854 kb on + strand, within Xcc-8004.3607.1at 3495.855 kb on - strand, within Xcc-8004.3607.1at 3495.905 kb on + strand, within Xcc-8004.3607.1at 3495.905 kb on + strand, within Xcc-8004.3607.1at 3495.905 kb on + strand, within Xcc-8004.3607.1at 3495.906 kb on - strand, within Xcc-8004.3607.1at 3496.190 kb on + strand, within Xcc-8004.3607.1at 3496.211 kb on + strand, within Xcc-8004.3607.1at 3496.211 kb on + strand, within Xcc-8004.3607.1at 3496.212 kb on - strand, within Xcc-8004.3607.1at 3496.260 kb on - strand, within Xcc-8004.3607.1at 3496.271 kb on + strand, within Xcc-8004.3607.1at 3496.271 kb on + strand, within Xcc-8004.3607.1at 3496.271 kb on + strand, within Xcc-8004.3607.1at 3496.271 kb on + strand, within Xcc-8004.3607.1at 3496.271 kb on + strand, within Xcc-8004.3607.1at 3496.272 kb on - strand, within Xcc-8004.3607.1at 3496.272 kb on - strand, within Xcc-8004.3607.1at 3496.493 kb on + strand, within Xcc-8004.3607.1at 3496.493 kb on + strand, within Xcc-8004.3607.1at 3496.493 kb on + strand, within Xcc-8004.3607.1at 3496.493 kb on + strand, within Xcc-8004.3607.1at 3496.494 kb on - strand, within Xcc-8004.3607.1at 3496.494 kb on - strand, within Xcc-8004.3607.1at 3496.494 kb on - strand, within Xcc-8004.3607.1at 3496.494 kb on - strand, within Xcc-8004.3607.1at 3496.494 kb on - strand, within Xcc-8004.3607.1at 3496.494 kb on - strand, within Xcc-8004.3607.1at 3496.562 kb on + strand, within Xcc-8004.3607.1at 3496.605 kb on - strandat 3496.729 kb on + strandat 3496.729 kb on + strandat 3496.729 kb on + strandat 3496.729 kb on + strandat 3496.730 kb on - strandat 3496.730 kb on - strandat 3496.730 kb on - strandat 3496.826 kb on - strand, within Xcc-8004.3608.1at 3496.826 kb on - strand, within Xcc-8004.3608.1at 3496.936 kb on + strand, within Xcc-8004.3608.1at 3497.200 kb on + strand, within Xcc-8004.3608.1at 3497.200 kb on + strand, within Xcc-8004.3608.1at 3497.201 kb on - strand, within Xcc-8004.3608.1at 3497.360 kb on - strand, within Xcc-8004.3609.1at 3497.392 kb on - strand, within Xcc-8004.3609.1at 3497.392 kb on - strand, within Xcc-8004.3609.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
remove
3,494,643 + Xcc-8004.3605.1 0.12 +0.8
3,494,643 + Xcc-8004.3605.1 0.12 -1.8
3,494,643 + Xcc-8004.3605.1 0.12 -2.0
3,494,643 + Xcc-8004.3605.1 0.12 -1.6
3,494,643 + Xcc-8004.3605.1 0.12 +0.2
3,494,644 - Xcc-8004.3605.1 0.12 +1.0
3,494,644 - Xcc-8004.3605.1 0.12 -0.8
3,494,644 - Xcc-8004.3605.1 0.12 +0.7
3,494,644 - Xcc-8004.3605.1 0.12 +1.9
3,494,644 - Xcc-8004.3605.1 0.12 -2.5
3,494,715 + Xcc-8004.3605.1 0.20 -0.2
3,494,716 - Xcc-8004.3605.1 0.20 -0.6
3,494,716 - Xcc-8004.3605.1 0.20 +1.3
3,494,916 + Xcc-8004.3605.1 0.43 +0.2
3,494,917 - Xcc-8004.3605.1 0.43 -0.0
3,494,929 + Xcc-8004.3605.1 0.44 +0.4
3,494,929 + Xcc-8004.3605.1 0.44 +1.7
3,494,929 + Xcc-8004.3605.1 0.44 -2.2
3,494,929 + Xcc-8004.3605.1 0.44 -0.1
3,494,929 + Xcc-8004.3605.1 0.44 -0.4
3,494,929 + Xcc-8004.3605.1 0.44 +1.0
3,494,929 + Xcc-8004.3605.1 0.44 +1.5
3,494,929 + Xcc-8004.3605.1 0.44 +2.1
3,494,930 - Xcc-8004.3605.1 0.44 +2.4
3,494,930 - Xcc-8004.3605.1 0.44 +0.5
3,494,930 - Xcc-8004.3605.1 0.44 -0.6
3,494,949 + Xcc-8004.3605.1 0.46 -1.8
3,494,949 + Xcc-8004.3605.1 0.46 -0.8
3,494,949 + Xcc-8004.3605.1 0.46 +1.5
3,494,949 + Xcc-8004.3605.1 0.46 -0.8
3,494,950 - Xcc-8004.3605.1 0.46 -0.6
3,494,950 - Xcc-8004.3605.1 0.46 -0.9
3,494,950 - Xcc-8004.3605.1 0.46 +1.2
3,494,952 + Xcc-8004.3605.1 0.47 +0.3
3,494,952 + Xcc-8004.3605.1 0.47 -1.4
3,494,952 + Xcc-8004.3605.1 0.47 -0.1
3,494,952 + Xcc-8004.3605.1 0.47 -0.4
3,494,953 - Xcc-8004.3605.1 0.47 -0.3
3,494,953 - Xcc-8004.3605.1 0.47 -0.6
3,495,030 + Xcc-8004.3605.1 0.55 -0.0
3,495,030 + Xcc-8004.3605.1 0.55 -0.3
3,495,030 + Xcc-8004.3605.1 0.55 +0.8
3,495,030 + Xcc-8004.3605.1 0.55 -0.3
3,495,030 + Xcc-8004.3605.1 0.55 +0.4
3,495,030 + Xcc-8004.3605.1 0.55 -0.9
3,495,030 + Xcc-8004.3605.1 0.55 -2.5
3,495,030 + Xcc-8004.3605.1 0.55 +1.7
3,495,030 + Xcc-8004.3605.1 0.55 +0.0
3,495,030 + Xcc-8004.3605.1 0.55 +1.5
3,495,030 + Xcc-8004.3605.1 0.55 -0.1
3,495,030 + Xcc-8004.3605.1 0.55 +0.7
3,495,031 - Xcc-8004.3605.1 0.56 -0.1
3,495,031 - Xcc-8004.3605.1 0.56 +1.5
3,495,031 - Xcc-8004.3605.1 0.56 +0.4
3,495,031 - Xcc-8004.3605.1 0.56 +0.9
3,495,031 - Xcc-8004.3605.1 0.56 -1.7
3,495,132 + Xcc-8004.3605.1 0.67 +1.0
3,495,133 - Xcc-8004.3605.1 0.67 +1.0
3,495,133 - Xcc-8004.3605.1 0.67 +2.4
3,495,671 + Xcc-8004.3607.1 0.19 -0.1
3,495,671 + Xcc-8004.3607.1 0.19 +0.8
3,495,671 + Xcc-8004.3607.1 0.19 +1.3
3,495,671 + Xcc-8004.3607.1 0.19 -2.2
3,495,672 - Xcc-8004.3607.1 0.20 -1.4
3,495,672 - Xcc-8004.3607.1 0.20 -2.1
3,495,672 - Xcc-8004.3607.1 0.20 +0.6
3,495,802 + Xcc-8004.3607.1 0.30 -0.8
3,495,854 + Xcc-8004.3607.1 0.34 -2.3
3,495,854 + Xcc-8004.3607.1 0.34 +0.2
3,495,855 - Xcc-8004.3607.1 0.34 +1.0
3,495,905 + Xcc-8004.3607.1 0.38 +0.7
3,495,905 + Xcc-8004.3607.1 0.38 +2.4
3,495,905 + Xcc-8004.3607.1 0.38 +0.3
3,495,906 - Xcc-8004.3607.1 0.38 +1.2
3,496,190 + Xcc-8004.3607.1 0.59 -0.1
3,496,211 + Xcc-8004.3607.1 0.61 +1.0
3,496,211 + Xcc-8004.3607.1 0.61 -0.0
3,496,212 - Xcc-8004.3607.1 0.61 -1.0
3,496,260 - Xcc-8004.3607.1 0.65 +0.6
3,496,271 + Xcc-8004.3607.1 0.66 -1.5
3,496,271 + Xcc-8004.3607.1 0.66 +0.9
3,496,271 + Xcc-8004.3607.1 0.66 -3.2
3,496,271 + Xcc-8004.3607.1 0.66 -1.2
3,496,271 + Xcc-8004.3607.1 0.66 +0.1
3,496,272 - Xcc-8004.3607.1 0.66 +1.2
3,496,272 - Xcc-8004.3607.1 0.66 +1.3
3,496,493 + Xcc-8004.3607.1 0.83 -1.3
3,496,493 + Xcc-8004.3607.1 0.83 +1.8
3,496,493 + Xcc-8004.3607.1 0.83 +0.2
3,496,493 + Xcc-8004.3607.1 0.83 +0.9
3,496,494 - Xcc-8004.3607.1 0.83 -0.3
3,496,494 - Xcc-8004.3607.1 0.83 +1.7
3,496,494 - Xcc-8004.3607.1 0.83 -1.6
3,496,494 - Xcc-8004.3607.1 0.83 +0.3
3,496,494 - Xcc-8004.3607.1 0.83 -0.5
3,496,494 - Xcc-8004.3607.1 0.83 +0.5
3,496,562 + Xcc-8004.3607.1 0.88 -0.9
3,496,605 - +0.2
3,496,729 + +0.3
3,496,729 + +0.8
3,496,729 + -0.2
3,496,729 + +0.5
3,496,730 - -1.6
3,496,730 - -0.9
3,496,730 - -0.6
3,496,826 - Xcc-8004.3608.1 0.21 -0.9
3,496,826 - Xcc-8004.3608.1 0.21 +1.8
3,496,936 + Xcc-8004.3608.1 0.41 -0.6
3,497,200 + Xcc-8004.3608.1 0.90 +1.0
3,497,200 + Xcc-8004.3608.1 0.90 -0.1
3,497,201 - Xcc-8004.3608.1 0.90 +1.0
3,497,360 - Xcc-8004.3609.1 0.14 -0.8
3,497,392 - Xcc-8004.3609.1 0.18 +0.9
3,497,392 - Xcc-8004.3609.1 0.18 -1.8

Or see this region's nucleotide sequence