Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3249.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
3,153,908	+		Xcc-8004.3248.1	0.43	+3.6
3,153,908	+		Xcc-8004.3248.1	0.43	+0.3
3,153,920	+		Xcc-8004.3248.1	0.45	-3.5
3,153,920	+		Xcc-8004.3248.1	0.45	-0.0
3,153,920	+		Xcc-8004.3248.1	0.45	+0.6
3,153,920	+		Xcc-8004.3248.1	0.45	-1.0
3,153,920	+		Xcc-8004.3248.1	0.45	+0.5
3,153,920	+		Xcc-8004.3248.1	0.45	-1.6
3,153,920	+		Xcc-8004.3248.1	0.45	+0.5
3,153,920	+		Xcc-8004.3248.1	0.45	-1.1
3,153,920	+		Xcc-8004.3248.1	0.45	-1.4
3,153,921	-		Xcc-8004.3248.1	0.45	-0.1
3,153,921	-		Xcc-8004.3248.1	0.45	+2.6
3,153,921	-		Xcc-8004.3248.1	0.45	+1.6
3,153,940	+		Xcc-8004.3248.1	0.47	+3.0
3,153,941	-		Xcc-8004.3248.1	0.48	+2.0
3,153,990	+		Xcc-8004.3248.1	0.54	-0.3
3,153,990	+		Xcc-8004.3248.1	0.54	-1.4
3,153,990	+		Xcc-8004.3248.1	0.54	+1.0
3,153,990	+		Xcc-8004.3248.1	0.54	-1.6
3,153,990	+		Xcc-8004.3248.1	0.54	+1.0
3,153,990	+		Xcc-8004.3248.1	0.54	-0.1
3,153,990	+		Xcc-8004.3248.1	0.54	+0.9
3,153,991	-		Xcc-8004.3248.1	0.54	-1.7
3,153,991	-		Xcc-8004.3248.1	0.54	+0.2
3,154,051	+		Xcc-8004.3248.1	0.62	-1.2
3,154,063	-		Xcc-8004.3248.1	0.64	-1.6
3,154,063	-		Xcc-8004.3248.1	0.64	-1.3
3,154,096	+		Xcc-8004.3248.1	0.68	+0.6
3,154,096	+		Xcc-8004.3248.1	0.68	+4.1
3,154,096	+		Xcc-8004.3248.1	0.68	+0.9
3,154,097	-		Xcc-8004.3248.1	0.68	-0.3
3,154,255	+		Xcc-8004.3248.1	0.89	+0.2
3,154,286	+				-0.4
3,154,286	+				+1.0
3,154,286	+				-1.6
3,154,286	+				+0.1
3,154,286	+				+0.5
3,154,286	+				+0.3
3,154,287	-				+0.6
3,154,287	-				+0.8
3,154,287	-				-0.5
3,154,287	-				+0.6
3,154,287	-				+1.5
3,154,287	-				-0.7
3,154,287	-				-1.0
3,154,289	+				+0.1
3,154,289	+				+0.5
3,154,289	+				-1.2
3,154,289	+				+1.4
3,154,289	+				+1.6
3,154,289	+				-2.1
3,154,289	+				+1.5
3,154,290	-				+0.6
3,154,290	-				+1.3
3,154,290	-				-2.2
3,154,290	-				-1.9
3,154,290	-				-1.1
3,154,290	-				-0.4
3,154,290	-				-0.3
3,154,313	+				-1.3
3,154,313	+				-0.1
3,154,314	-				-1.4
3,154,314	-				-0.1
3,154,314	-				-0.8
3,154,314	-				-1.5
3,154,314	-				+1.5
3,154,314	-				-0.3
3,154,314	-				+1.0
3,154,320	-				-0.9
3,154,349	+				+0.8
3,154,350	-				-1.6
3,154,358	+				-0.1
3,154,358	+				-0.9
3,154,359	-				-0.2
3,154,359	-				+0.3
3,154,359	-				+0.2
3,154,359	-				-0.1
3,154,359	-				+0.2
3,154,359	-				+1.2
3,154,359	-				-0.2
3,154,368	+				-0.2
3,154,368	+				-1.0
3,154,389	+				-0.0
3,154,389	+				+1.3
3,154,389	+				-0.8
3,154,422	+				+0.5
3,154,423	-				-0.4
3,154,439	-				+0.3
3,154,480	+				+1.1
3,154,525	+				-3.0
3,154,525	+				-1.6
3,154,526	-				-1.4
3,154,526	-				+0.3
3,154,526	-				-0.8
3,154,574	+				-0.4
3,154,575	-				+0.4
3,154,575	-				-0.4
3,154,804	+				-0.1
3,154,805	-				-2.1
3,154,805	-				-0.1
3,155,001	+		Xcc-8004.3249.1	0.28	+0.9
3,155,001	+		Xcc-8004.3249.1	0.28	+0.9
3,155,001	+		Xcc-8004.3249.1	0.28	+1.0
3,155,001	+		Xcc-8004.3249.1	0.28	-0.8
3,155,001	+		Xcc-8004.3249.1	0.28	+0.2
3,155,002	-		Xcc-8004.3249.1	0.28	+1.1
3,155,002	-		Xcc-8004.3249.1	0.28	-0.2
3,155,002	-		Xcc-8004.3249.1	0.28	+1.0
3,155,002	-		Xcc-8004.3249.1	0.28	+0.6
3,155,002	-		Xcc-8004.3249.1	0.28	+0.2
3,155,002	-		Xcc-8004.3249.1	0.28	+1.8
3,155,002	-		Xcc-8004.3249.1	0.28	-1.1
3,155,023	+		Xcc-8004.3249.1	0.32	+0.9
3,155,023	+		Xcc-8004.3249.1	0.32	-1.3
3,155,024	-		Xcc-8004.3249.1	0.32	+0.8
3,155,024	-		Xcc-8004.3249.1	0.32	+0.9
3,155,024	-		Xcc-8004.3249.1	0.32	-1.4
3,155,116	+		Xcc-8004.3249.1	0.47	-1.3
3,155,117	-		Xcc-8004.3249.1	0.47	+1.0
3,155,117	-		Xcc-8004.3249.1	0.47	+2.0
3,155,124	+		Xcc-8004.3249.1	0.48	+0.1
3,155,124	+		Xcc-8004.3249.1	0.48	-1.3
3,155,139	+		Xcc-8004.3249.1	0.50	+1.5
3,155,139	+		Xcc-8004.3249.1	0.50	-0.4
3,155,139	+		Xcc-8004.3249.1	0.50	+1.1
3,155,139	+		Xcc-8004.3249.1	0.50	-1.0
3,155,140	-		Xcc-8004.3249.1	0.50	+0.7
3,155,263	+		Xcc-8004.3249.1	0.70	-0.5
3,155,263	+		Xcc-8004.3249.1	0.70	+1.2
3,155,263	+		Xcc-8004.3249.1	0.70	+0.6
3,155,263	+		Xcc-8004.3249.1	0.70	-0.6
3,155,263	+		Xcc-8004.3249.1	0.70	-1.1
3,155,264	-		Xcc-8004.3249.1	0.70	+1.0
3,155,264	-		Xcc-8004.3249.1	0.70	-1.9
3,155,264	-		Xcc-8004.3249.1	0.70	-0.8
3,155,277	-		Xcc-8004.3249.1	0.72	+0.0
3,155,310	+		Xcc-8004.3249.1	0.78	+0.3
3,155,310	+		Xcc-8004.3249.1	0.78	+1.9
3,155,311	-		Xcc-8004.3249.1	0.78	+0.3
3,155,311	-		Xcc-8004.3249.1	0.78	+0.4
3,155,311	-		Xcc-8004.3249.1	0.78	-0.8
3,155,311	-		Xcc-8004.3249.1	0.78	-1.0
3,155,460	+				+0.1
3,155,565	+		Xcc-8004.3250.1	0.36	-0.1
3,155,565	+		Xcc-8004.3250.1	0.36	+0.5
3,155,565	+		Xcc-8004.3250.1	0.36	-0.6
3,155,565	+		Xcc-8004.3250.1	0.36	-1.0
3,155,565	+		Xcc-8004.3250.1	0.36	+0.4
3,155,565	+		Xcc-8004.3250.1	0.36	-2.2
3,155,565	+		Xcc-8004.3250.1	0.36	-1.5
3,155,565	+		Xcc-8004.3250.1	0.36	+2.1
3,155,565	+		Xcc-8004.3250.1	0.36	-1.0
3,155,566	-		Xcc-8004.3250.1	0.37	+0.4
3,155,566	-		Xcc-8004.3250.1	0.37	-0.6
3,155,566	-		Xcc-8004.3250.1	0.37	+0.9
3,155,566	-		Xcc-8004.3250.1	0.37	+1.5
3,155,583	+		Xcc-8004.3250.1	0.43	-1.1
3,155,584	-		Xcc-8004.3250.1	0.43	+0.6
3,155,584	-		Xcc-8004.3250.1	0.43	+0.3
3,155,584	-		Xcc-8004.3250.1	0.43	+0.5
3,155,584	-		Xcc-8004.3250.1	0.43	+1.0
3,155,625	+		Xcc-8004.3250.1	0.57	-0.4
3,155,625	+		Xcc-8004.3250.1	0.57	-0.3
3,155,626	-		Xcc-8004.3250.1	0.57	-3.1
3,155,752	+				-1.4
3,155,753	-				-0.1
3,155,753	-				-0.1
3,155,756	+				-1.2
3,155,757	-				-2.4
3,155,757	-				+0.9
3,155,757	-				+0.6
3,155,757	-				+0.8
3,155,778	+				+2.8
3,155,778	+				-0.9
3,155,779	-				+1.1
3,155,786	+				-0.6
3,155,786	+				-0.4
3,155,786	+				-3.3
3,155,787	-				-0.4
3,155,787	-				-0.8
3,155,790	+				+1.1
3,155,794	-				-0.2
3,155,794	-				-2.1
3,155,794	-				+0.1
3,155,796	+				-0.2
3,155,825	+				-0.2
3,155,840	-				+2.1
3,155,853	-				+0.3
3,155,856	+				+1.2
3,155,857	-				+0.2
3,155,857	-				-0.4
3,155,857	-				+0.7
3,155,857	-				+0.0
3,155,860	+				+0.1
3,155,866	-				-1.4
3,155,887	-				+1.8
3,155,887	-				+0.5
3,155,943	+				-1.5
3,155,943	+				+0.2
3,155,944	-				-1.2
3,155,944	-				+0.4
3,155,947	+				-0.3
3,155,947	+				+1.1
3,155,948	-				+0.3
3,155,948	-				+0.8
3,155,948	-				+1.0
3,155,963	-				-1.0
3,155,963	-				-1.5
3,155,963	-				-1.1
3,155,973	+				+0.9
3,155,973	+				+0.4
3,155,973	+				-0.0
3,155,973	+				-0.0
3,155,974	-				-3.0
3,155,974	-				-0.4
3,155,998	+				+1.0
3,156,074	+				-0.5
3,156,075	-				-0.9
3,156,080	+				+1.3
3,156,080	+				-2.8
3,156,081	-				-2.0
3,156,118	-				-0.7
3,156,118	-				-1.9
3,156,142	+				+0.9
3,156,142	+				-0.3
3,156,142	+				-1.8
3,156,142	+				-1.8
3,156,143	-				-0.7
3,156,248	+		Xcc-8004.3251.1	0.14	-0.8
3,156,248	+		Xcc-8004.3251.1	0.14	+1.1
3,156,249	-		Xcc-8004.3251.1	0.14	+2.4
3,156,249	-		Xcc-8004.3251.1	0.14	+0.2
3,156,249	-		Xcc-8004.3251.1	0.14	+0.4
3,156,249	-		Xcc-8004.3251.1	0.14	+1.9
3,156,249	-		Xcc-8004.3251.1	0.14	-0.4
3,156,373	+		Xcc-8004.3251.1	0.22	-0.5
3,156,374	-		Xcc-8004.3251.1	0.22	+0.9