Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1883.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1881.1 and Xcc-8004.1882.1 are separated by 12 nucleotidesXcc-8004.1882.1 and Xcc-8004.1883.1 are separated by 98 nucleotidesXcc-8004.1883.1 and Xcc-8004.1884.1 are separated by 169 nucleotidesXcc-8004.1884.1 and Xcc-8004.1885.1 are separated by 153 nucleotides Xcc-8004.1881.1: Xcc-8004.1881.1 - FIG005080: Possible exported protein, at 1,814,404 to 1,818,294 Xcc-8004.1881.1 Xcc-8004.1882.1: Xcc-8004.1882.1 - FIG01211261: hypothetical protein, at 1,818,307 to 1,819,062 Xcc-8004.1882.1 Xcc-8004.1883.1: Xcc-8004.1883.1 - TldD protein, part of TldE/TldD proteolytic complex, at 1,819,161 to 1,820,606 Xcc-8004.1883.1 Xcc-8004.1884.1: Xcc-8004.1884.1 - FIG138315: Putative alpha helix protein, at 1,820,776 to 1,821,357 Xcc-8004.1884.1 Xcc-8004.1885.1: Xcc-8004.1885.1 - TldE protein, part of TldE/TldD proteolytic complex, at 1,821,511 to 1,822,923 Xcc-8004.1885.1 Position (kb) 1819 1820 1821Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 1818.190 kb on + strandat 1818.190 kb on + strandat 1818.190 kb on + strandat 1818.190 kb on + strandat 1818.190 kb on + strandat 1818.190 kb on + strandat 1818.190 kb on + strandat 1818.190 kb on + strandat 1818.190 kb on + strandat 1818.191 kb on - strandat 1818.191 kb on - strandat 1818.191 kb on - strandat 1818.191 kb on - strandat 1818.191 kb on - strandat 1818.191 kb on - strandat 1818.292 kb on + strandat 1818.293 kb on - strandat 1818.419 kb on + strand, within Xcc-8004.1882.1at 1818.420 kb on - strand, within Xcc-8004.1882.1at 1818.584 kb on - strand, within Xcc-8004.1882.1at 1818.642 kb on + strand, within Xcc-8004.1882.1at 1818.668 kb on + strand, within Xcc-8004.1882.1at 1818.669 kb on - strand, within Xcc-8004.1882.1at 1818.669 kb on - strand, within Xcc-8004.1882.1at 1818.669 kb on - strand, within Xcc-8004.1882.1at 1818.963 kb on - strand, within Xcc-8004.1882.1at 1818.968 kb on + strand, within Xcc-8004.1882.1at 1818.968 kb on + strand, within Xcc-8004.1882.1at 1818.968 kb on + strand, within Xcc-8004.1882.1at 1818.968 kb on + strand, within Xcc-8004.1882.1at 1818.968 kb on + strand, within Xcc-8004.1882.1at 1818.968 kb on + strand, within Xcc-8004.1882.1at 1818.968 kb on + strand, within Xcc-8004.1882.1at 1818.969 kb on - strand, within Xcc-8004.1882.1at 1818.969 kb on - strand, within Xcc-8004.1882.1at 1818.969 kb on - strand, within Xcc-8004.1882.1at 1818.969 kb on - strand, within Xcc-8004.1882.1at 1818.969 kb on - strand, within Xcc-8004.1882.1at 1819.097 kb on + strandat 1819.220 kb on + strandat 1819.284 kb on + strandat 1819.284 kb on + strandat 1819.284 kb on + strandat 1819.284 kb on + strandat 1819.285 kb on - strandat 1819.285 kb on - strandat 1819.285 kb on - strandat 1819.285 kb on - strandat 1819.408 kb on - strand, within Xcc-8004.1883.1at 1819.408 kb on - strand, within Xcc-8004.1883.1at 1819.527 kb on + strand, within Xcc-8004.1883.1at 1819.600 kb on - strand, within Xcc-8004.1883.1at 1819.600 kb on - strand, within Xcc-8004.1883.1at 1819.666 kb on + strand, within Xcc-8004.1883.1at 1819.666 kb on + strand, within Xcc-8004.1883.1at 1819.771 kb on - strand, within Xcc-8004.1883.1at 1819.797 kb on + strand, within Xcc-8004.1883.1at 1819.797 kb on + strand, within Xcc-8004.1883.1at 1819.798 kb on - strand, within Xcc-8004.1883.1at 1819.998 kb on + strand, within Xcc-8004.1883.1at 1819.998 kb on + strand, within Xcc-8004.1883.1at 1819.999 kb on - strand, within Xcc-8004.1883.1at 1819.999 kb on - strand, within Xcc-8004.1883.1at 1819.999 kb on - strand, within Xcc-8004.1883.1at 1819.999 kb on - strand, within Xcc-8004.1883.1at 1820.088 kb on - strand, within Xcc-8004.1883.1at 1820.151 kb on + strand, within Xcc-8004.1883.1at 1820.152 kb on - strand, within Xcc-8004.1883.1at 1820.152 kb on - strand, within Xcc-8004.1883.1at 1820.252 kb on + strand, within Xcc-8004.1883.1at 1820.252 kb on + strand, within Xcc-8004.1883.1at 1820.252 kb on + strand, within Xcc-8004.1883.1at 1820.252 kb on + strand, within Xcc-8004.1883.1at 1820.253 kb on - strand, within Xcc-8004.1883.1at 1820.253 kb on - strand, within Xcc-8004.1883.1at 1820.253 kb on - strand, within Xcc-8004.1883.1at 1820.256 kb on + strand, within Xcc-8004.1883.1at 1820.256 kb on + strand, within Xcc-8004.1883.1at 1820.256 kb on + strand, within Xcc-8004.1883.1at 1820.256 kb on + strand, within Xcc-8004.1883.1at 1820.256 kb on + strand, within Xcc-8004.1883.1at 1820.256 kb on + strand, within Xcc-8004.1883.1at 1820.256 kb on + strand, within Xcc-8004.1883.1at 1820.256 kb on + strand, within Xcc-8004.1883.1at 1820.256 kb on + strand, within Xcc-8004.1883.1at 1820.256 kb on + strand, within Xcc-8004.1883.1at 1820.256 kb on + strand, within Xcc-8004.1883.1at 1820.256 kb on + strand, within Xcc-8004.1883.1at 1820.256 kb on + strand, within Xcc-8004.1883.1at 1820.256 kb on + strand, within Xcc-8004.1883.1at 1820.256 kb on + strand, within Xcc-8004.1883.1at 1820.257 kb on - strand, within Xcc-8004.1883.1at 1820.257 kb on - strand, within Xcc-8004.1883.1at 1820.257 kb on - strand, within Xcc-8004.1883.1at 1820.257 kb on - strand, within Xcc-8004.1883.1at 1820.257 kb on - strand, within Xcc-8004.1883.1at 1820.257 kb on - strand, within Xcc-8004.1883.1at 1820.257 kb on - strand, within Xcc-8004.1883.1at 1820.257 kb on - strand, within Xcc-8004.1883.1at 1820.257 kb on - strand, within Xcc-8004.1883.1at 1820.257 kb on - strand, within Xcc-8004.1883.1at 1820.257 kb on - strand, within Xcc-8004.1883.1at 1820.257 kb on - strand, within Xcc-8004.1883.1at 1820.257 kb on - strand, within Xcc-8004.1883.1at 1820.316 kb on + strand, within Xcc-8004.1883.1at 1820.316 kb on + strand, within Xcc-8004.1883.1at 1820.316 kb on + strand, within Xcc-8004.1883.1at 1820.316 kb on + strand, within Xcc-8004.1883.1at 1820.316 kb on + strand, within Xcc-8004.1883.1at 1820.316 kb on + strand, within Xcc-8004.1883.1at 1820.316 kb on + strand, within Xcc-8004.1883.1at 1820.316 kb on + strand, within Xcc-8004.1883.1at 1820.316 kb on + strand, within Xcc-8004.1883.1at 1820.317 kb on - strand, within Xcc-8004.1883.1at 1820.317 kb on - strand, within Xcc-8004.1883.1at 1820.317 kb on - strand, within Xcc-8004.1883.1at 1820.317 kb on - strand, within Xcc-8004.1883.1at 1820.317 kb on - strand, within Xcc-8004.1883.1at 1820.317 kb on - strand, within Xcc-8004.1883.1at 1820.317 kb on - strand, within Xcc-8004.1883.1at 1820.317 kb on - strand, within Xcc-8004.1883.1at 1820.317 kb on - strand, within Xcc-8004.1883.1at 1820.317 kb on - strand, within Xcc-8004.1883.1at 1820.317 kb on - strand, within Xcc-8004.1883.1at 1820.317 kb on - strand, within Xcc-8004.1883.1at 1820.317 kb on - strand, within Xcc-8004.1883.1at 1820.364 kb on + strand, within Xcc-8004.1883.1at 1820.364 kb on + strand, within Xcc-8004.1883.1at 1820.364 kb on + strand, within Xcc-8004.1883.1at 1820.364 kb on + strand, within Xcc-8004.1883.1at 1820.364 kb on + strand, within Xcc-8004.1883.1at 1820.364 kb on + strand, within Xcc-8004.1883.1at 1820.364 kb on + strand, within Xcc-8004.1883.1at 1820.364 kb on + strand, within Xcc-8004.1883.1at 1820.364 kb on + strand, within Xcc-8004.1883.1at 1820.364 kb on + strand, within Xcc-8004.1883.1at 1820.365 kb on - strand, within Xcc-8004.1883.1at 1820.365 kb on - strand, within Xcc-8004.1883.1at 1820.365 kb on - strand, within Xcc-8004.1883.1at 1820.365 kb on - strand, within Xcc-8004.1883.1at 1820.365 kb on - strand, within Xcc-8004.1883.1at 1820.365 kb on - strand, within Xcc-8004.1883.1at 1820.365 kb on - strand, within Xcc-8004.1883.1at 1820.365 kb on - strand, within Xcc-8004.1883.1at 1820.365 kb on - strand, within Xcc-8004.1883.1at 1820.365 kb on - strand, within Xcc-8004.1883.1at 1820.365 kb on - strand, within Xcc-8004.1883.1at 1820.388 kb on + strand, within Xcc-8004.1883.1at 1820.388 kb on + strand, within Xcc-8004.1883.1at 1820.388 kb on + strand, within Xcc-8004.1883.1at 1820.389 kb on - strand, within Xcc-8004.1883.1at 1820.777 kb on + strandat 1820.777 kb on + strandat 1820.777 kb on + strandat 1820.777 kb on + strandat 1820.778 kb on - strandat 1820.778 kb on - strandat 1820.778 kb on - strandat 1820.966 kb on + strand, within Xcc-8004.1884.1at 1821.363 kb on + strandat 1821.363 kb on + strandat 1821.363 kb on + strandat 1821.364 kb on - strandat 1821.364 kb on - strandat 1821.364 kb on - strandat 1821.364 kb on - strandat 1821.364 kb on - strandat 1821.364 kb on - strandat 1821.364 kb on - strandat 1821.381 kb on + strandat 1821.381 kb on + strandat 1821.381 kb on + strandat 1821.381 kb on + strandat 1821.381 kb on + strandat 1821.382 kb on - strandat 1821.382 kb on - strandat 1821.382 kb on - strandat 1821.382 kb on - strandat 1821.549 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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1,818,190 + -0.9
1,818,190 + -0.8
1,818,190 + +0.6
1,818,190 + +0.6
1,818,190 + +5.8
1,818,190 + -0.0
1,818,190 + -1.1
1,818,190 + +0.2
1,818,190 + +3.7
1,818,191 - +1.6
1,818,191 - -0.1
1,818,191 - -0.8
1,818,191 - +0.1
1,818,191 - -0.0
1,818,191 - -0.0
1,818,292 + -2.5
1,818,293 - +1.1
1,818,419 + Xcc-8004.1882.1 0.15 +0.1
1,818,420 - Xcc-8004.1882.1 0.15 -0.5
1,818,584 - Xcc-8004.1882.1 0.37 -0.7
1,818,642 + Xcc-8004.1882.1 0.44 +1.1
1,818,668 + Xcc-8004.1882.1 0.48 +0.3
1,818,669 - Xcc-8004.1882.1 0.48 +0.8
1,818,669 - Xcc-8004.1882.1 0.48 +1.9
1,818,669 - Xcc-8004.1882.1 0.48 -1.1
1,818,963 - Xcc-8004.1882.1 0.87 +1.0
1,818,968 + Xcc-8004.1882.1 0.87 +0.5
1,818,968 + Xcc-8004.1882.1 0.87 +0.9
1,818,968 + Xcc-8004.1882.1 0.87 +1.0
1,818,968 + Xcc-8004.1882.1 0.87 -0.8
1,818,968 + Xcc-8004.1882.1 0.87 +1.3
1,818,968 + Xcc-8004.1882.1 0.87 +2.1
1,818,968 + Xcc-8004.1882.1 0.87 +0.3
1,818,969 - Xcc-8004.1882.1 0.88 +0.5
1,818,969 - Xcc-8004.1882.1 0.88 +0.1
1,818,969 - Xcc-8004.1882.1 0.88 -0.5
1,818,969 - Xcc-8004.1882.1 0.88 +0.4
1,818,969 - Xcc-8004.1882.1 0.88 -0.8
1,819,097 + +0.1
1,819,220 + +1.2
1,819,284 + +0.5
1,819,284 + -1.5
1,819,284 + -2.5
1,819,284 + +0.3
1,819,285 - -0.4
1,819,285 - -1.2
1,819,285 - +0.2
1,819,285 - -1.6
1,819,408 - Xcc-8004.1883.1 0.17 -1.5
1,819,408 - Xcc-8004.1883.1 0.17 -0.9
1,819,527 + Xcc-8004.1883.1 0.25 +0.1
1,819,600 - Xcc-8004.1883.1 0.30 -0.6
1,819,600 - Xcc-8004.1883.1 0.30 +1.0
1,819,666 + Xcc-8004.1883.1 0.35 -0.9
1,819,666 + Xcc-8004.1883.1 0.35 +0.2
1,819,771 - Xcc-8004.1883.1 0.42 -0.3
1,819,797 + Xcc-8004.1883.1 0.44 +1.2
1,819,797 + Xcc-8004.1883.1 0.44 +0.6
1,819,798 - Xcc-8004.1883.1 0.44 -0.6
1,819,998 + Xcc-8004.1883.1 0.58 +1.6
1,819,998 + Xcc-8004.1883.1 0.58 -2.3
1,819,999 - Xcc-8004.1883.1 0.58 +1.5
1,819,999 - Xcc-8004.1883.1 0.58 +0.7
1,819,999 - Xcc-8004.1883.1 0.58 -2.5
1,819,999 - Xcc-8004.1883.1 0.58 -0.7
1,820,088 - Xcc-8004.1883.1 0.64 -0.4
1,820,151 + Xcc-8004.1883.1 0.68 +0.5
1,820,152 - Xcc-8004.1883.1 0.69 +0.2
1,820,152 - Xcc-8004.1883.1 0.69 +1.0
1,820,252 + Xcc-8004.1883.1 0.75 +2.4
1,820,252 + Xcc-8004.1883.1 0.75 +2.0
1,820,252 + Xcc-8004.1883.1 0.75 +0.7
1,820,252 + Xcc-8004.1883.1 0.75 +0.7
1,820,253 - Xcc-8004.1883.1 0.76 +0.9
1,820,253 - Xcc-8004.1883.1 0.76 -1.5
1,820,253 - Xcc-8004.1883.1 0.76 -2.2
1,820,256 + Xcc-8004.1883.1 0.76 -0.1
1,820,256 + Xcc-8004.1883.1 0.76 -0.1
1,820,256 + Xcc-8004.1883.1 0.76 -1.9
1,820,256 + Xcc-8004.1883.1 0.76 +1.3
1,820,256 + Xcc-8004.1883.1 0.76 -0.4
1,820,256 + Xcc-8004.1883.1 0.76 -0.6
1,820,256 + Xcc-8004.1883.1 0.76 +0.1
1,820,256 + Xcc-8004.1883.1 0.76 -0.7
1,820,256 + Xcc-8004.1883.1 0.76 +0.2
1,820,256 + Xcc-8004.1883.1 0.76 +1.8
1,820,256 + Xcc-8004.1883.1 0.76 -0.9
1,820,256 + Xcc-8004.1883.1 0.76 -0.2
1,820,256 + Xcc-8004.1883.1 0.76 +1.5
1,820,256 + Xcc-8004.1883.1 0.76 -3.1
1,820,256 + Xcc-8004.1883.1 0.76 +0.3
1,820,257 - Xcc-8004.1883.1 0.76 +0.4
1,820,257 - Xcc-8004.1883.1 0.76 +1.5
1,820,257 - Xcc-8004.1883.1 0.76 +0.8
1,820,257 - Xcc-8004.1883.1 0.76 -0.2
1,820,257 - Xcc-8004.1883.1 0.76 -2.3
1,820,257 - Xcc-8004.1883.1 0.76 +0.9
1,820,257 - Xcc-8004.1883.1 0.76 +1.5
1,820,257 - Xcc-8004.1883.1 0.76 +1.0
1,820,257 - Xcc-8004.1883.1 0.76 -0.7
1,820,257 - Xcc-8004.1883.1 0.76 +2.1
1,820,257 - Xcc-8004.1883.1 0.76 +0.6
1,820,257 - Xcc-8004.1883.1 0.76 -1.7
1,820,257 - Xcc-8004.1883.1 0.76 +0.0
1,820,316 + Xcc-8004.1883.1 0.80 -0.4
1,820,316 + Xcc-8004.1883.1 0.80 +0.3
1,820,316 + Xcc-8004.1883.1 0.80 +0.7
1,820,316 + Xcc-8004.1883.1 0.80 +0.6
1,820,316 + Xcc-8004.1883.1 0.80 -0.5
1,820,316 + Xcc-8004.1883.1 0.80 -1.0
1,820,316 + Xcc-8004.1883.1 0.80 -1.3
1,820,316 + Xcc-8004.1883.1 0.80 -2.4
1,820,316 + Xcc-8004.1883.1 0.80 +0.5
1,820,317 - Xcc-8004.1883.1 0.80 -2.5
1,820,317 - Xcc-8004.1883.1 0.80 -1.1
1,820,317 - Xcc-8004.1883.1 0.80 +0.1
1,820,317 - Xcc-8004.1883.1 0.80 -0.7
1,820,317 - Xcc-8004.1883.1 0.80 +2.2
1,820,317 - Xcc-8004.1883.1 0.80 -2.6
1,820,317 - Xcc-8004.1883.1 0.80 +0.4
1,820,317 - Xcc-8004.1883.1 0.80 -0.4
1,820,317 - Xcc-8004.1883.1 0.80 -0.7
1,820,317 - Xcc-8004.1883.1 0.80 +0.4
1,820,317 - Xcc-8004.1883.1 0.80 +1.6
1,820,317 - Xcc-8004.1883.1 0.80 -0.2
1,820,317 - Xcc-8004.1883.1 0.80 +0.4
1,820,364 + Xcc-8004.1883.1 0.83 +0.2
1,820,364 + Xcc-8004.1883.1 0.83 +1.4
1,820,364 + Xcc-8004.1883.1 0.83 +0.7
1,820,364 + Xcc-8004.1883.1 0.83 -0.6
1,820,364 + Xcc-8004.1883.1 0.83 +0.2
1,820,364 + Xcc-8004.1883.1 0.83 +1.7
1,820,364 + Xcc-8004.1883.1 0.83 +0.5
1,820,364 + Xcc-8004.1883.1 0.83 +0.7
1,820,364 + Xcc-8004.1883.1 0.83 -1.5
1,820,364 + Xcc-8004.1883.1 0.83 -0.5
1,820,365 - Xcc-8004.1883.1 0.83 +1.5
1,820,365 - Xcc-8004.1883.1 0.83 +0.2
1,820,365 - Xcc-8004.1883.1 0.83 -1.1
1,820,365 - Xcc-8004.1883.1 0.83 -2.9
1,820,365 - Xcc-8004.1883.1 0.83 +1.5
1,820,365 - Xcc-8004.1883.1 0.83 -0.9
1,820,365 - Xcc-8004.1883.1 0.83 +0.1
1,820,365 - Xcc-8004.1883.1 0.83 -0.5
1,820,365 - Xcc-8004.1883.1 0.83 +0.8
1,820,365 - Xcc-8004.1883.1 0.83 -0.9
1,820,365 - Xcc-8004.1883.1 0.83 +0.9
1,820,388 + Xcc-8004.1883.1 0.85 +1.5
1,820,388 + Xcc-8004.1883.1 0.85 -0.1
1,820,388 + Xcc-8004.1883.1 0.85 +0.8
1,820,389 - Xcc-8004.1883.1 0.85 +0.5
1,820,777 + +0.4
1,820,777 + -0.1
1,820,777 + +0.4
1,820,777 + -0.9
1,820,778 - -1.4
1,820,778 - -1.7
1,820,778 - +0.6
1,820,966 + Xcc-8004.1884.1 0.33 -1.9
1,821,363 + -0.1
1,821,363 + -1.0
1,821,363 + -2.1
1,821,364 - +0.4
1,821,364 - +0.8
1,821,364 - +0.4
1,821,364 - +2.0
1,821,364 - +0.2
1,821,364 - +0.3
1,821,364 - -0.1
1,821,381 + +0.7
1,821,381 + +0.0
1,821,381 + +0.9
1,821,381 + +0.4
1,821,381 + -0.5
1,821,382 - +0.9
1,821,382 - +1.5
1,821,382 - +0.5
1,821,382 - -2.4
1,821,549 + -0.7

Or see this region's nucleotide sequence