Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS03925 and PFLU_RS03930 overlap by 4 nucleotides PFLU_RS03930 and PFLU_RS03935 overlap by 4 nucleotides PFLU_RS03935 and PFLU_RS03940 overlap by 4 nucleotides PFLU_RS03940 and PFLU_RS03945 overlap by 4 nucleotides
PFLU_RS03925: PFLU_RS03925 - hypothetical protein, at 888,993 to 889,208
_RS03925
PFLU_RS03930: PFLU_RS03930 - DNA gyrase inhibitor YacG, at 889,205 to 889,405
_RS03930
PFLU_RS03935: PFLU_RS03935 - dephospho-CoA kinase, at 889,402 to 890,025
_RS03935
PFLU_RS03940: PFLU_RS03940 - prepilin peptidase, at 890,022 to 890,888
_RS03940
PFLU_RS03945: PFLU_RS03945 - type II secretion system F family protein, at 890,885 to 892,093
_RS03945
Position (kb) 890
891 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 889.155 kb on + strand, within PFLU_RS03925 at 889.155 kb on + strand, within PFLU_RS03925 at 889.155 kb on + strand, within PFLU_RS03925 at 889.155 kb on + strand, within PFLU_RS03925 at 889.155 kb on + strand, within PFLU_RS03925 at 889.156 kb on - strand, within PFLU_RS03925 at 889.156 kb on - strand, within PFLU_RS03925 at 889.156 kb on - strand, within PFLU_RS03925 at 889.156 kb on - strand, within PFLU_RS03925 at 889.156 kb on - strand, within PFLU_RS03925 at 889.156 kb on - strand, within PFLU_RS03925 at 889.156 kb on - strand, within PFLU_RS03925 at 889.156 kb on - strand, within PFLU_RS03925 at 889.156 kb on - strand, within PFLU_RS03925 at 889.156 kb on - strand, within PFLU_RS03925 at 889.188 kb on + strand at 889.188 kb on + strand at 889.188 kb on + strand at 889.189 kb on - strand at 889.189 kb on - strand at 889.189 kb on - strand at 889.189 kb on - strand at 889.189 kb on - strand at 889.189 kb on - strand at 889.196 kb on + strand at 889.196 kb on + strand at 889.196 kb on + strand at 889.197 kb on - strand at 889.197 kb on - strand at 889.206 kb on + strand at 889.206 kb on + strand at 889.207 kb on - strand at 889.270 kb on + strand, within PFLU_RS03930 at 889.270 kb on + strand, within PFLU_RS03930 at 889.270 kb on + strand, within PFLU_RS03930 at 889.270 kb on + strand, within PFLU_RS03930 at 889.270 kb on + strand, within PFLU_RS03930 at 889.270 kb on + strand, within PFLU_RS03930 at 889.271 kb on - strand, within PFLU_RS03930 at 889.271 kb on - strand, within PFLU_RS03930 at 889.271 kb on - strand, within PFLU_RS03930 at 889.271 kb on - strand, within PFLU_RS03930 at 889.271 kb on - strand, within PFLU_RS03930 at 889.271 kb on - strand, within PFLU_RS03930 at 889.271 kb on - strand, within PFLU_RS03930 at 889.271 kb on - strand, within PFLU_RS03930 at 889.425 kb on + strand at 889.425 kb on + strand at 889.425 kb on + strand at 889.425 kb on + strand at 889.425 kb on + strand at 889.425 kb on + strand at 889.426 kb on - strand at 889.426 kb on - strand at 889.426 kb on - strand at 889.426 kb on - strand at 889.426 kb on - strand at 889.426 kb on - strand at 890.047 kb on + strand at 890.047 kb on + strand at 890.047 kb on + strand at 890.047 kb on + strand at 890.047 kb on + strand at 890.048 kb on - strand at 890.048 kb on - strand at 890.048 kb on - strand at 890.048 kb on - strand at 890.058 kb on + strand at 890.059 kb on - strand at 890.104 kb on + strand at 890.104 kb on + strand at 890.105 kb on - strand at 890.105 kb on - strand at 890.191 kb on - strand, within PFLU_RS03940 at 890.307 kb on + strand, within PFLU_RS03940 at 890.307 kb on + strand, within PFLU_RS03940 at 890.307 kb on + strand, within PFLU_RS03940 at 890.308 kb on - strand, within PFLU_RS03940 at 890.308 kb on - strand, within PFLU_RS03940 at 890.326 kb on + strand, within PFLU_RS03940 at 890.326 kb on + strand, within PFLU_RS03940 at 890.326 kb on + strand, within PFLU_RS03940 at 890.326 kb on + strand, within PFLU_RS03940 at 890.326 kb on + strand, within PFLU_RS03940 at 890.327 kb on - strand, within PFLU_RS03940 at 890.626 kb on + strand, within PFLU_RS03940 at 890.626 kb on + strand, within PFLU_RS03940 at 890.626 kb on + strand, within PFLU_RS03940 at 890.626 kb on + strand, within PFLU_RS03940 at 890.627 kb on - strand, within PFLU_RS03940 at 890.627 kb on - strand, within PFLU_RS03940 at 890.627 kb on - strand, within PFLU_RS03940 at 890.627 kb on - strand, within PFLU_RS03940 at 890.627 kb on - strand, within PFLU_RS03940 at 890.643 kb on - strand, within PFLU_RS03940 at 890.659 kb on - strand, within PFLU_RS03940 at 890.707 kb on + strand, within PFLU_RS03940 at 890.707 kb on + strand, within PFLU_RS03940 at 890.707 kb on + strand, within PFLU_RS03940 at 890.707 kb on + strand, within PFLU_RS03940 at 890.707 kb on + strand, within PFLU_RS03940 at 890.708 kb on - strand, within PFLU_RS03940 at 890.708 kb on - strand, within PFLU_RS03940 at 890.708 kb on - strand, within PFLU_RS03940 at 890.708 kb on - strand, within PFLU_RS03940 at 890.708 kb on - strand, within PFLU_RS03940 at 890.708 kb on - strand, within PFLU_RS03940 at 890.708 kb on - strand, within PFLU_RS03940 at 890.708 kb on - strand, within PFLU_RS03940 at 890.708 kb on - strand, within PFLU_RS03940 at 890.877 kb on + strand at 890.877 kb on + strand at 890.877 kb on + strand at 890.919 kb on + strand at 890.919 kb on + strand at 890.919 kb on + strand at 890.919 kb on + strand at 890.919 kb on + strand at 890.919 kb on + strand at 890.919 kb on + strand at 890.919 kb on + strand at 890.919 kb on + strand at 890.919 kb on + strand at 890.919 kb on + strand at 890.919 kb on + strand at 890.919 kb on + strand at 890.920 kb on - strand at 890.920 kb on - strand at 890.920 kb on - strand at 890.920 kb on - strand at 890.920 kb on - strand at 890.920 kb on - strand at 890.920 kb on - strand at 890.920 kb on - strand at 890.920 kb on - strand at 890.920 kb on - strand at 890.920 kb on - strand at 890.957 kb on + strand at 890.957 kb on + strand at 890.958 kb on - strand at 891.024 kb on + strand, within PFLU_RS03945 at 891.024 kb on + strand, within PFLU_RS03945 at 891.025 kb on - strand, within PFLU_RS03945 at 891.025 kb on - strand, within PFLU_RS03945 at 891.025 kb on - strand, within PFLU_RS03945 at 891.145 kb on + strand, within PFLU_RS03945 at 891.155 kb on + strand, within PFLU_RS03945 at 891.155 kb on + strand, within PFLU_RS03945 at 891.155 kb on + strand, within PFLU_RS03945 at 891.155 kb on + strand, within PFLU_RS03945 at 891.155 kb on + strand, within PFLU_RS03945 at 891.155 kb on + strand, within PFLU_RS03945 at 891.155 kb on + strand, within PFLU_RS03945 at 891.155 kb on + strand, within PFLU_RS03945 at 891.155 kb on + strand, within PFLU_RS03945 at 891.155 kb on + strand, within PFLU_RS03945 at 891.155 kb on + strand, within PFLU_RS03945 at 891.155 kb on + strand, within PFLU_RS03945 at 891.155 kb on + strand, within PFLU_RS03945 at 891.155 kb on + strand, within PFLU_RS03945 at 891.155 kb on + strand, within PFLU_RS03945 at 891.156 kb on - strand, within PFLU_RS03945 at 891.156 kb on - strand, within PFLU_RS03945 at 891.156 kb on - strand, within PFLU_RS03945 at 891.156 kb on - strand, within PFLU_RS03945 at 891.156 kb on - strand, within PFLU_RS03945 at 891.156 kb on - strand, within PFLU_RS03945 at 891.156 kb on - strand, within PFLU_RS03945 at 891.156 kb on - strand, within PFLU_RS03945 at 891.156 kb on - strand, within PFLU_RS03945 at 891.156 kb on - strand, within PFLU_RS03945 at 891.156 kb on - strand, within PFLU_RS03945 at 891.156 kb on - strand, within PFLU_RS03945 at 891.156 kb on - strand, within PFLU_RS03945 at 891.156 kb on - strand, within PFLU_RS03945 at 891.156 kb on - strand, within PFLU_RS03945 at 891.279 kb on + strand, within PFLU_RS03945 at 891.472 kb on + strand, within PFLU_RS03945 at 891.473 kb on - strand, within PFLU_RS03945 at 891.473 kb on - strand, within PFLU_RS03945 at 891.527 kb on + strand, within PFLU_RS03945 at 891.527 kb on + strand, within PFLU_RS03945 at 891.527 kb on + strand, within PFLU_RS03945 at 891.527 kb on + strand, within PFLU_RS03945 at 891.527 kb on + strand, within PFLU_RS03945 at 891.528 kb on - strand, within PFLU_RS03945 at 891.528 kb on - strand, within PFLU_RS03945 at 891.528 kb on - strand, within PFLU_RS03945 at 891.528 kb on - strand, within PFLU_RS03945 at 891.528 kb on - strand, within PFLU_RS03945 at 891.528 kb on - strand, within PFLU_RS03945 at 891.528 kb on - strand, within PFLU_RS03945 at 891.528 kb on - strand, within PFLU_RS03945 at 891.528 kb on - strand, within PFLU_RS03945 at 891.528 kb on - strand, within PFLU_RS03945 at 891.533 kb on + strand, within PFLU_RS03945 at 891.533 kb on + strand, within PFLU_RS03945 at 891.533 kb on + strand, within PFLU_RS03945 at 891.534 kb on - strand, within PFLU_RS03945 at 891.534 kb on - strand, within PFLU_RS03945 at 891.585 kb on + strand, within PFLU_RS03945 at 891.585 kb on + strand, within PFLU_RS03945 at 891.585 kb on + strand, within PFLU_RS03945 at 891.586 kb on - strand, within PFLU_RS03945 at 891.586 kb on - strand, within PFLU_RS03945 at 891.614 kb on + strand, within PFLU_RS03945 at 891.705 kb on + strand, within PFLU_RS03945 at 891.705 kb on + strand, within PFLU_RS03945 at 891.706 kb on - strand, within PFLU_RS03945 at 891.706 kb on - strand, within PFLU_RS03945 at 891.721 kb on - strand, within PFLU_RS03945 at 891.721 kb on - strand, within PFLU_RS03945 at 891.845 kb on + strand, within PFLU_RS03945 at 891.845 kb on + strand, within PFLU_RS03945 at 891.845 kb on + strand, within PFLU_RS03945 at 891.845 kb on + strand, within PFLU_RS03945 at 891.845 kb on + strand, within PFLU_RS03945 at 891.845 kb on + strand, within PFLU_RS03945 at 891.845 kb on + strand, within PFLU_RS03945 at 891.845 kb on + strand, within PFLU_RS03945 at 891.845 kb on + strand, within PFLU_RS03945 at 891.845 kb on + strand, within PFLU_RS03945 at 891.846 kb on - strand, within PFLU_RS03945 at 891.846 kb on - strand, within PFLU_RS03945 at 891.846 kb on - strand, within PFLU_RS03945 at 891.846 kb on - strand, within PFLU_RS03945 at 891.846 kb on - strand, within PFLU_RS03945 at 891.846 kb on - strand, within PFLU_RS03945 at 891.846 kb on - strand, within PFLU_RS03945
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs remove 889,155 + PFLU_RS03925 0.75 -1.5 889,155 + PFLU_RS03925 0.75 -0.6 889,155 + PFLU_RS03925 0.75 -1.1 889,155 + PFLU_RS03925 0.75 +0.2 889,155 + PFLU_RS03925 0.75 +0.3 889,156 - PFLU_RS03925 0.75 -0.1 889,156 - PFLU_RS03925 0.75 +0.1 889,156 - PFLU_RS03925 0.75 -0.0 889,156 - PFLU_RS03925 0.75 +0.5 889,156 - PFLU_RS03925 0.75 +0.7 889,156 - PFLU_RS03925 0.75 -0.4 889,156 - PFLU_RS03925 0.75 +0.0 889,156 - PFLU_RS03925 0.75 +1.2 889,156 - PFLU_RS03925 0.75 -0.8 889,156 - PFLU_RS03925 0.75 -1.1 889,188 + -1.3 889,188 + -0.6 889,188 + +1.2 889,189 - +0.4 889,189 - -1.0 889,189 - -0.1 889,189 - +0.5 889,189 - -1.6 889,189 - +0.5 889,196 + -0.1 889,196 + -0.4 889,196 + +0.6 889,197 - +0.5 889,197 - -0.0 889,206 + -0.0 889,206 + -0.3 889,207 - +0.5 889,270 + PFLU_RS03930 0.32 +0.9 889,270 + PFLU_RS03930 0.32 -1.2 889,270 + PFLU_RS03930 0.32 -0.1 889,270 + PFLU_RS03930 0.32 -0.6 889,270 + PFLU_RS03930 0.32 -0.5 889,270 + PFLU_RS03930 0.32 +0.6 889,271 - PFLU_RS03930 0.33 -0.8 889,271 - PFLU_RS03930 0.33 -0.5 889,271 - PFLU_RS03930 0.33 +0.7 889,271 - PFLU_RS03930 0.33 -0.8 889,271 - PFLU_RS03930 0.33 -0.2 889,271 - PFLU_RS03930 0.33 +1.1 889,271 - PFLU_RS03930 0.33 -0.2 889,271 - PFLU_RS03930 0.33 -0.3 889,425 + +2.1 889,425 + +0.1 889,425 + -0.9 889,425 + +0.5 889,425 + -0.4 889,425 + -0.3 889,426 - -0.2 889,426 - -1.2 889,426 - -0.2 889,426 - -0.0 889,426 - -0.1 889,426 - +0.9 890,047 + -0.9 890,047 + -1.3 890,047 + +0.9 890,047 + -0.6 890,047 + -2.8 890,048 - -0.6 890,048 - -0.3 890,048 - -0.4 890,048 - -1.5 890,058 + -0.4 890,059 - -0.9 890,104 + -0.4 890,104 + -0.2 890,105 - -3.1 890,105 - +0.5 890,191 - PFLU_RS03940 0.19 +0.1 890,307 + PFLU_RS03940 0.33 +0.6 890,307 + PFLU_RS03940 0.33 +1.1 890,307 + PFLU_RS03940 0.33 +0.8 890,308 - PFLU_RS03940 0.33 +2.9 890,308 - PFLU_RS03940 0.33 +0.3 890,326 + PFLU_RS03940 0.35 +1.2 890,326 + PFLU_RS03940 0.35 +1.4 890,326 + PFLU_RS03940 0.35 +0.8 890,326 + PFLU_RS03940 0.35 +0.6 890,326 + PFLU_RS03940 0.35 -1.2 890,327 - PFLU_RS03940 0.35 +1.3 890,626 + PFLU_RS03940 0.70 +0.1 890,626 + PFLU_RS03940 0.70 +1.2 890,626 + PFLU_RS03940 0.70 +0.3 890,626 + PFLU_RS03940 0.70 +1.9 890,627 - PFLU_RS03940 0.70 +1.2 890,627 - PFLU_RS03940 0.70 +1.6 890,627 - PFLU_RS03940 0.70 +1.2 890,627 - PFLU_RS03940 0.70 -0.6 890,627 - PFLU_RS03940 0.70 +1.3 890,643 - PFLU_RS03940 0.72 +1.1 890,659 - PFLU_RS03940 0.73 -0.2 890,707 + PFLU_RS03940 0.79 +1.1 890,707 + PFLU_RS03940 0.79 +1.4 890,707 + PFLU_RS03940 0.79 +0.8 890,707 + PFLU_RS03940 0.79 +1.5 890,707 + PFLU_RS03940 0.79 +0.7 890,708 - PFLU_RS03940 0.79 +1.2 890,708 - PFLU_RS03940 0.79 +0.3 890,708 - PFLU_RS03940 0.79 +1.9 890,708 - PFLU_RS03940 0.79 +0.4 890,708 - PFLU_RS03940 0.79 +1.7 890,708 - PFLU_RS03940 0.79 +1.3 890,708 - PFLU_RS03940 0.79 +2.8 890,708 - PFLU_RS03940 0.79 -0.7 890,708 - PFLU_RS03940 0.79 +1.5 890,877 + +0.2 890,877 + +0.3 890,877 + +0.6 890,919 + +0.1 890,919 + +0.0 890,919 + -2.8 890,919 + -0.1 890,919 + +0.7 890,919 + -0.6 890,919 + -1.1 890,919 + -0.7 890,919 + -2.5 890,919 + +0.9 890,919 + -0.1 890,919 + -0.2 890,919 + -1.1 890,920 - +1.8 890,920 - +0.4 890,920 - -0.1 890,920 - +2.3 890,920 - +0.5 890,920 - -0.2 890,920 - -0.0 890,920 - -0.1 890,920 - +1.2 890,920 - -1.1 890,920 - +0.2 890,957 + +1.7 890,957 + -0.8 890,958 - -0.8 891,024 + PFLU_RS03945 0.11 +0.7 891,024 + PFLU_RS03945 0.11 +1.0 891,025 - PFLU_RS03945 0.12 -0.6 891,025 - PFLU_RS03945 0.12 -0.6 891,025 - PFLU_RS03945 0.12 -0.3 891,145 + PFLU_RS03945 0.22 -1.8 891,155 + PFLU_RS03945 0.22 +1.2 891,155 + PFLU_RS03945 0.22 +0.4 891,155 + PFLU_RS03945 0.22 -1.6 891,155 + PFLU_RS03945 0.22 +0.5 891,155 + PFLU_RS03945 0.22 +0.2 891,155 + PFLU_RS03945 0.22 -0.2 891,155 + PFLU_RS03945 0.22 -0.6 891,155 + PFLU_RS03945 0.22 +2.7 891,155 + PFLU_RS03945 0.22 -1.6 891,155 + PFLU_RS03945 0.22 -0.5 891,155 + PFLU_RS03945 0.22 -0.1 891,155 + PFLU_RS03945 0.22 +0.8 891,155 + PFLU_RS03945 0.22 +0.6 891,155 + PFLU_RS03945 0.22 +0.5 891,155 + PFLU_RS03945 0.22 -0.3 891,156 - PFLU_RS03945 0.22 +1.2 891,156 - PFLU_RS03945 0.22 -0.3 891,156 - PFLU_RS03945 0.22 -0.2 891,156 - PFLU_RS03945 0.22 +0.2 891,156 - PFLU_RS03945 0.22 +2.1 891,156 - PFLU_RS03945 0.22 -0.1 891,156 - PFLU_RS03945 0.22 +1.9 891,156 - PFLU_RS03945 0.22 -0.8 891,156 - PFLU_RS03945 0.22 +1.3 891,156 - PFLU_RS03945 0.22 +0.5 891,156 - PFLU_RS03945 0.22 +0.3 891,156 - PFLU_RS03945 0.22 +0.7 891,156 - PFLU_RS03945 0.22 -0.5 891,156 - PFLU_RS03945 0.22 +0.5 891,156 - PFLU_RS03945 0.22 +0.4 891,279 + PFLU_RS03945 0.33 -1.5 891,472 + PFLU_RS03945 0.49 +1.2 891,473 - PFLU_RS03945 0.49 +1.9 891,473 - PFLU_RS03945 0.49 -0.6 891,527 + PFLU_RS03945 0.53 -1.3 891,527 + PFLU_RS03945 0.53 -0.4 891,527 + PFLU_RS03945 0.53 -1.8 891,527 + PFLU_RS03945 0.53 -1.6 891,527 + PFLU_RS03945 0.53 -0.6 891,528 - PFLU_RS03945 0.53 -1.9 891,528 - PFLU_RS03945 0.53 +0.4 891,528 - PFLU_RS03945 0.53 -0.2 891,528 - PFLU_RS03945 0.53 +1.8 891,528 - PFLU_RS03945 0.53 +0.8 891,528 - PFLU_RS03945 0.53 +0.1 891,528 - PFLU_RS03945 0.53 -1.2 891,528 - PFLU_RS03945 0.53 +1.4 891,528 - PFLU_RS03945 0.53 +0.6 891,528 - PFLU_RS03945 0.53 -0.6 891,533 + PFLU_RS03945 0.54 +0.1 891,533 + PFLU_RS03945 0.54 +0.5 891,533 + PFLU_RS03945 0.54 -0.3 891,534 - PFLU_RS03945 0.54 +1.1 891,534 - PFLU_RS03945 0.54 +0.1 891,585 + PFLU_RS03945 0.58 +1.2 891,585 + PFLU_RS03945 0.58 -0.1 891,585 + PFLU_RS03945 0.58 +0.4 891,586 - PFLU_RS03945 0.58 +0.2 891,586 - PFLU_RS03945 0.58 -1.5 891,614 + PFLU_RS03945 0.60 -1.3 891,705 + PFLU_RS03945 0.68 +1.4 891,705 + PFLU_RS03945 0.68 +0.0 891,706 - PFLU_RS03945 0.68 +0.2 891,706 - PFLU_RS03945 0.68 +0.2 891,721 - PFLU_RS03945 0.69 +1.0 891,721 - PFLU_RS03945 0.69 -0.2 891,845 + PFLU_RS03945 0.79 -0.6 891,845 + PFLU_RS03945 0.79 -1.2 891,845 + PFLU_RS03945 0.79 +1.2 891,845 + PFLU_RS03945 0.79 -0.5 891,845 + PFLU_RS03945 0.79 -0.6 891,845 + PFLU_RS03945 0.79 -0.3 891,845 + PFLU_RS03945 0.79 +0.5 891,845 + PFLU_RS03945 0.79 +0.3 891,845 + PFLU_RS03945 0.79 +0.2 891,845 + PFLU_RS03945 0.79 +0.6 891,846 - PFLU_RS03945 0.79 -2.0 891,846 - PFLU_RS03945 0.79 -1.6 891,846 - PFLU_RS03945 0.79 +0.5 891,846 - PFLU_RS03945 0.79 +0.4 891,846 - PFLU_RS03945 0.79 +1.0 891,846 - PFLU_RS03945 0.79 +1.4 891,846 - PFLU_RS03945 0.79 -1.1
Or see this region's nucleotide sequence