Experiment: m.b. Phosphomycin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c09860 and PGA1_c09870 are separated by 166 nucleotides PGA1_c09870 and PGA1_c09880 are separated by 123 nucleotides
PGA1_c09860: PGA1_c09860 - hypothetical protein, at 1,018,029 to 1,019,369
_c09860
PGA1_c09870: PGA1_c09870 - hypothetical protein, at 1,019,536 to 1,019,988
_c09870
PGA1_c09880: PGA1_c09880 - aminopeptidase N, at 1,020,112 to 1,022,676
_c09880
Position (kb)
1019
1020 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1018.559 kb on + strand, within PGA1_c09860 at 1018.656 kb on + strand, within PGA1_c09860 at 1018.709 kb on + strand, within PGA1_c09860 at 1018.709 kb on + strand, within PGA1_c09860 at 1018.736 kb on - strand, within PGA1_c09860 at 1018.757 kb on + strand, within PGA1_c09860 at 1018.757 kb on + strand, within PGA1_c09860 at 1018.762 kb on + strand, within PGA1_c09860 at 1018.799 kb on + strand, within PGA1_c09860 at 1018.839 kb on + strand, within PGA1_c09860 at 1018.847 kb on + strand, within PGA1_c09860 at 1018.902 kb on - strand, within PGA1_c09860 at 1019.030 kb on - strand, within PGA1_c09860 at 1019.030 kb on - strand, within PGA1_c09860 at 1019.117 kb on + strand, within PGA1_c09860 at 1019.131 kb on - strand, within PGA1_c09860 at 1019.134 kb on - strand, within PGA1_c09860 at 1019.153 kb on - strand, within PGA1_c09860 at 1019.155 kb on - strand, within PGA1_c09860 at 1019.229 kb on + strand, within PGA1_c09860 at 1019.229 kb on + strand, within PGA1_c09860 at 1019.237 kb on + strand at 1019.237 kb on - strand at 1019.237 kb on - strand at 1019.256 kb on + strand at 1019.287 kb on + strand at 1019.370 kb on + strand at 1019.376 kb on - strand at 1019.378 kb on - strand at 1019.391 kb on + strand at 1019.493 kb on - strand at 1019.600 kb on - strand, within PGA1_c09870 at 1019.636 kb on - strand, within PGA1_c09870 at 1019.696 kb on + strand, within PGA1_c09870 at 1019.696 kb on + strand, within PGA1_c09870 at 1019.766 kb on - strand, within PGA1_c09870 at 1019.766 kb on - strand, within PGA1_c09870 at 1019.851 kb on + strand, within PGA1_c09870 at 1019.859 kb on - strand, within PGA1_c09870 at 1019.871 kb on + strand, within PGA1_c09870 at 1019.892 kb on - strand, within PGA1_c09870 at 1020.116 kb on - strand at 1020.117 kb on - strand at 1020.191 kb on + strand at 1020.283 kb on - strand at 1020.283 kb on - strand at 1020.342 kb on - strand at 1020.526 kb on + strand, within PGA1_c09880 at 1020.571 kb on - strand, within PGA1_c09880 at 1020.668 kb on - strand, within PGA1_c09880 at 1020.704 kb on + strand, within PGA1_c09880 at 1020.742 kb on - strand, within PGA1_c09880 at 1020.787 kb on + strand, within PGA1_c09880 at 1020.828 kb on + strand, within PGA1_c09880 at 1020.836 kb on - strand, within PGA1_c09880 at 1020.900 kb on + strand, within PGA1_c09880
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 2 mg/ml remove 1,018,559 + PGA1_c09860 0.40 -0.4 1,018,656 + PGA1_c09860 0.47 -0.3 1,018,709 + PGA1_c09860 0.51 +0.1 1,018,709 + PGA1_c09860 0.51 -0.2 1,018,736 - PGA1_c09860 0.53 -0.7 1,018,757 + PGA1_c09860 0.54 -1.0 1,018,757 + PGA1_c09860 0.54 -0.0 1,018,762 + PGA1_c09860 0.55 -0.7 1,018,799 + PGA1_c09860 0.57 -0.5 1,018,839 + PGA1_c09860 0.60 -3.5 1,018,847 + PGA1_c09860 0.61 +0.1 1,018,902 - PGA1_c09860 0.65 +0.4 1,019,030 - PGA1_c09860 0.75 -0.2 1,019,030 - PGA1_c09860 0.75 +0.7 1,019,117 + PGA1_c09860 0.81 +0.8 1,019,131 - PGA1_c09860 0.82 -0.1 1,019,134 - PGA1_c09860 0.82 +0.3 1,019,153 - PGA1_c09860 0.84 +0.1 1,019,155 - PGA1_c09860 0.84 -0.5 1,019,229 + PGA1_c09860 0.89 -1.4 1,019,229 + PGA1_c09860 0.89 +0.7 1,019,237 + -1.1 1,019,237 - +0.5 1,019,237 - -0.7 1,019,256 + +0.3 1,019,287 + -0.8 1,019,370 + -1.0 1,019,376 - -0.4 1,019,378 - -2.9 1,019,391 + -2.0 1,019,493 - +1.3 1,019,600 - PGA1_c09870 0.14 -0.7 1,019,636 - PGA1_c09870 0.22 -0.3 1,019,696 + PGA1_c09870 0.35 +0.4 1,019,696 + PGA1_c09870 0.35 +1.1 1,019,766 - PGA1_c09870 0.51 +0.3 1,019,766 - PGA1_c09870 0.51 -0.2 1,019,851 + PGA1_c09870 0.70 -0.1 1,019,859 - PGA1_c09870 0.71 +1.7 1,019,871 + PGA1_c09870 0.74 -0.5 1,019,892 - PGA1_c09870 0.79 -0.7 1,020,116 - +0.9 1,020,117 - +0.7 1,020,191 + +0.8 1,020,283 - -0.9 1,020,283 - +0.3 1,020,342 - -1.5 1,020,526 + PGA1_c09880 0.16 +0.1 1,020,571 - PGA1_c09880 0.18 +1.5 1,020,668 - PGA1_c09880 0.22 -1.1 1,020,704 + PGA1_c09880 0.23 -0.4 1,020,742 - PGA1_c09880 0.25 +0.0 1,020,787 + PGA1_c09880 0.26 +0.2 1,020,828 + PGA1_c09880 0.28 -2.4 1,020,836 - PGA1_c09880 0.28 +0.8 1,020,900 + PGA1_c09880 0.31 -0.8
Or see this region's nucleotide sequence