Experiment: m.b. Phosphomycin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06440 and PGA1_c06450 are separated by 13 nucleotides PGA1_c06450 and PGA1_c06460 are separated by 118 nucleotides PGA1_c06460 and PGA1_c06470 are separated by 258 nucleotides
PGA1_c06440: PGA1_c06440 - Uncharacterized protein conserved in bacteria, at 658,926 to 659,456
_c06440
PGA1_c06450: PGA1_c06450 - short-chain dehydrogenases/reductase domain-containing protein, at 659,470 to 660,111
_c06450
PGA1_c06460: PGA1_c06460 - Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain, at 660,230 to 662,008
_c06460
PGA1_c06470: PGA1_c06470 - glycyl-tRNA synthetase alpha subunit, at 662,267 to 663,196
_c06470
Position (kb) 660
661
662
663 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 659.239 kb on + strand, within PGA1_c06440 at 659.259 kb on + strand, within PGA1_c06440 at 659.273 kb on + strand, within PGA1_c06440 at 659.274 kb on + strand, within PGA1_c06440 at 659.284 kb on + strand, within PGA1_c06440 at 659.312 kb on - strand, within PGA1_c06440 at 659.369 kb on + strand, within PGA1_c06440 at 659.384 kb on + strand, within PGA1_c06440 at 659.415 kb on + strand at 659.420 kb on + strand at 659.437 kb on - strand at 659.534 kb on - strand at 659.550 kb on + strand, within PGA1_c06450 at 659.566 kb on - strand, within PGA1_c06450 at 659.581 kb on - strand, within PGA1_c06450 at 659.639 kb on - strand, within PGA1_c06450 at 659.711 kb on - strand, within PGA1_c06450 at 659.713 kb on + strand, within PGA1_c06450 at 659.713 kb on + strand, within PGA1_c06450 at 659.721 kb on - strand, within PGA1_c06450 at 659.721 kb on - strand, within PGA1_c06450 at 659.726 kb on - strand, within PGA1_c06450 at 659.726 kb on - strand, within PGA1_c06450 at 659.730 kb on + strand, within PGA1_c06450 at 659.795 kb on - strand, within PGA1_c06450 at 659.798 kb on + strand, within PGA1_c06450 at 659.839 kb on + strand, within PGA1_c06450 at 659.864 kb on + strand, within PGA1_c06450 at 659.870 kb on - strand, within PGA1_c06450 at 659.887 kb on - strand, within PGA1_c06450 at 660.028 kb on + strand, within PGA1_c06450 at 660.059 kb on - strand at 660.059 kb on - strand at 660.092 kb on + strand at 660.141 kb on + strand at 660.155 kb on + strand at 660.187 kb on + strand at 660.223 kb on + strand at 660.269 kb on - strand at 660.271 kb on + strand at 660.283 kb on - strand at 660.327 kb on - strand at 660.331 kb on + strand at 660.331 kb on + strand at 660.331 kb on + strand at 660.331 kb on + strand at 660.339 kb on - strand at 660.349 kb on - strand at 660.349 kb on - strand at 660.349 kb on - strand at 660.360 kb on + strand at 660.387 kb on + strand at 660.387 kb on + strand at 660.387 kb on + strand at 660.431 kb on + strand, within PGA1_c06460 at 660.457 kb on + strand, within PGA1_c06460 at 660.465 kb on - strand, within PGA1_c06460 at 660.567 kb on - strand, within PGA1_c06460 at 660.620 kb on - strand, within PGA1_c06460 at 660.672 kb on + strand, within PGA1_c06460 at 660.673 kb on - strand, within PGA1_c06460 at 660.673 kb on - strand, within PGA1_c06460 at 660.777 kb on - strand, within PGA1_c06460 at 660.777 kb on - strand, within PGA1_c06460 at 660.791 kb on + strand, within PGA1_c06460 at 660.791 kb on + strand, within PGA1_c06460 at 660.841 kb on + strand, within PGA1_c06460 at 660.849 kb on - strand, within PGA1_c06460 at 660.849 kb on - strand, within PGA1_c06460 at 660.857 kb on - strand, within PGA1_c06460 at 660.975 kb on + strand, within PGA1_c06460 at 660.975 kb on + strand, within PGA1_c06460 at 660.975 kb on + strand, within PGA1_c06460 at 660.975 kb on + strand, within PGA1_c06460 at 660.975 kb on + strand, within PGA1_c06460 at 660.975 kb on + strand, within PGA1_c06460 at 660.975 kb on + strand, within PGA1_c06460 at 660.975 kb on + strand, within PGA1_c06460 at 660.975 kb on + strand, within PGA1_c06460 at 660.975 kb on + strand, within PGA1_c06460 at 660.983 kb on - strand, within PGA1_c06460 at 660.983 kb on - strand, within PGA1_c06460 at 660.983 kb on - strand, within PGA1_c06460 at 660.983 kb on - strand, within PGA1_c06460 at 660.983 kb on - strand, within PGA1_c06460 at 660.983 kb on - strand, within PGA1_c06460 at 660.983 kb on - strand, within PGA1_c06460 at 660.983 kb on - strand, within PGA1_c06460 at 660.983 kb on - strand, within PGA1_c06460 at 660.993 kb on - strand, within PGA1_c06460 at 661.017 kb on - strand, within PGA1_c06460 at 661.034 kb on - strand, within PGA1_c06460 at 661.054 kb on + strand, within PGA1_c06460 at 661.169 kb on + strand, within PGA1_c06460 at 661.188 kb on - strand, within PGA1_c06460 at 661.203 kb on + strand, within PGA1_c06460 at 661.308 kb on + strand, within PGA1_c06460 at 661.336 kb on - strand, within PGA1_c06460 at 661.349 kb on + strand, within PGA1_c06460 at 661.357 kb on - strand, within PGA1_c06460 at 661.361 kb on + strand, within PGA1_c06460 at 661.362 kb on - strand, within PGA1_c06460 at 661.411 kb on - strand, within PGA1_c06460 at 661.492 kb on - strand, within PGA1_c06460 at 661.492 kb on - strand, within PGA1_c06460 at 661.562 kb on + strand, within PGA1_c06460 at 661.661 kb on + strand, within PGA1_c06460 at 661.865 kb on + strand at 661.873 kb on - strand at 661.965 kb on + strand at 662.019 kb on + strand at 662.027 kb on - strand at 662.037 kb on - strand at 662.073 kb on + strand at 662.086 kb on - strand at 662.132 kb on + strand at 662.164 kb on + strand at 662.172 kb on - strand at 662.172 kb on - strand at 662.172 kb on - strand at 662.172 kb on - strand at 662.172 kb on - strand at 662.180 kb on + strand at 662.192 kb on + strand at 662.200 kb on + strand at 662.200 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 2 mg/ml remove 659,239 + PGA1_c06440 0.59 -1.7 659,259 + PGA1_c06440 0.63 +1.0 659,273 + PGA1_c06440 0.65 -0.3 659,274 + PGA1_c06440 0.66 +0.2 659,284 + PGA1_c06440 0.67 +0.3 659,312 - PGA1_c06440 0.73 -0.4 659,369 + PGA1_c06440 0.83 +1.1 659,384 + PGA1_c06440 0.86 -0.4 659,415 + +1.3 659,420 + -2.3 659,437 - -1.1 659,534 - -0.3 659,550 + PGA1_c06450 0.12 -0.0 659,566 - PGA1_c06450 0.15 -0.3 659,581 - PGA1_c06450 0.17 +0.5 659,639 - PGA1_c06450 0.26 +0.3 659,711 - PGA1_c06450 0.38 -0.5 659,713 + PGA1_c06450 0.38 +1.1 659,713 + PGA1_c06450 0.38 +1.6 659,721 - PGA1_c06450 0.39 -0.6 659,721 - PGA1_c06450 0.39 -0.1 659,726 - PGA1_c06450 0.40 -1.5 659,726 - PGA1_c06450 0.40 -0.6 659,730 + PGA1_c06450 0.40 +0.3 659,795 - PGA1_c06450 0.51 -0.6 659,798 + PGA1_c06450 0.51 -0.7 659,839 + PGA1_c06450 0.57 -0.8 659,864 + PGA1_c06450 0.61 -1.6 659,870 - PGA1_c06450 0.62 -1.8 659,887 - PGA1_c06450 0.65 +0.2 660,028 + PGA1_c06450 0.87 -0.4 660,059 - +0.2 660,059 - -0.4 660,092 + +0.4 660,141 + -0.1 660,155 + +0.5 660,187 + -1.1 660,223 + +0.3 660,269 - +0.7 660,271 + +1.6 660,283 - +1.6 660,327 - +1.3 660,331 + +1.3 660,331 + +1.6 660,331 + +0.7 660,331 + -2.5 660,339 - +2.9 660,349 - +0.6 660,349 - +0.5 660,349 - +1.1 660,360 + +1.0 660,387 + +0.6 660,387 + +0.6 660,387 + +1.8 660,431 + PGA1_c06460 0.11 -1.3 660,457 + PGA1_c06460 0.13 -0.9 660,465 - PGA1_c06460 0.13 +0.9 660,567 - PGA1_c06460 0.19 +1.0 660,620 - PGA1_c06460 0.22 +0.6 660,672 + PGA1_c06460 0.25 +0.4 660,673 - PGA1_c06460 0.25 +0.2 660,673 - PGA1_c06460 0.25 +0.9 660,777 - PGA1_c06460 0.31 +0.8 660,777 - PGA1_c06460 0.31 +1.5 660,791 + PGA1_c06460 0.32 +1.1 660,791 + PGA1_c06460 0.32 -0.5 660,841 + PGA1_c06460 0.34 +0.4 660,849 - PGA1_c06460 0.35 +2.3 660,849 - PGA1_c06460 0.35 +1.5 660,857 - PGA1_c06460 0.35 +1.5 660,975 + PGA1_c06460 0.42 -0.1 660,975 + PGA1_c06460 0.42 +1.4 660,975 + PGA1_c06460 0.42 +0.7 660,975 + PGA1_c06460 0.42 +1.1 660,975 + PGA1_c06460 0.42 -0.3 660,975 + PGA1_c06460 0.42 -0.8 660,975 + PGA1_c06460 0.42 +1.2 660,975 + PGA1_c06460 0.42 +2.0 660,975 + PGA1_c06460 0.42 +0.0 660,975 + PGA1_c06460 0.42 +0.6 660,983 - PGA1_c06460 0.42 +0.5 660,983 - PGA1_c06460 0.42 +1.5 660,983 - PGA1_c06460 0.42 +1.4 660,983 - PGA1_c06460 0.42 +0.6 660,983 - PGA1_c06460 0.42 +0.7 660,983 - PGA1_c06460 0.42 +2.3 660,983 - PGA1_c06460 0.42 +0.1 660,983 - PGA1_c06460 0.42 +0.8 660,983 - PGA1_c06460 0.42 -0.0 660,993 - PGA1_c06460 0.43 +1.0 661,017 - PGA1_c06460 0.44 +1.0 661,034 - PGA1_c06460 0.45 -0.6 661,054 + PGA1_c06460 0.46 +1.3 661,169 + PGA1_c06460 0.53 +1.5 661,188 - PGA1_c06460 0.54 +1.1 661,203 + PGA1_c06460 0.55 -1.2 661,308 + PGA1_c06460 0.61 +0.7 661,336 - PGA1_c06460 0.62 +1.8 661,349 + PGA1_c06460 0.63 +0.8 661,357 - PGA1_c06460 0.63 +1.6 661,361 + PGA1_c06460 0.64 +1.4 661,362 - PGA1_c06460 0.64 +0.5 661,411 - PGA1_c06460 0.66 +1.6 661,492 - PGA1_c06460 0.71 +0.2 661,492 - PGA1_c06460 0.71 +1.2 661,562 + PGA1_c06460 0.75 +2.1 661,661 + PGA1_c06460 0.80 +1.5 661,865 + +1.3 661,873 - +0.8 661,965 + +0.8 662,019 + -0.0 662,027 - +1.1 662,037 - +2.0 662,073 + -0.2 662,086 - -0.1 662,132 + +1.1 662,164 + +1.5 662,172 - -0.2 662,172 - +0.4 662,172 - -2.2 662,172 - -1.0 662,172 - -0.7 662,180 + -2.0 662,192 + -0.1 662,200 + -1.1 662,200 - -1.2
Or see this region's nucleotide sequence